EsuBft932_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft932_4a-0001
Unique NameEsuBft932_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_489contigScaffold_489:630983..632080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft932_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length109
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft932_4aEsuBft932_4aEctocarpus subulatus male Bft15bgeneScaffold_489 630983..632080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_4a-0001-exonEsuBft932_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_489 630983..632080 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_4a-0001-exonagat-five_prime_utr-15085Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_489 630983..630989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_4a-0001-cdsEsuBft932_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_489 630990..631259 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_4a-0001-exonagat-three_prime_utr-23193Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_489 631260..632080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_4a-0001EsuBft932_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_489 630990..631259 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft932_4a-0001 ID=EsuBft932_4a-0001|Name=EsuBft932_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1098bp|location=Sequence derived from alignment at Scaffold_489:630983..632080+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTGATGATGAAAGAATCCCCGGCTTCCGACCAGCAGACGATGTCAT
CCGACACGGACTCCACCATGCGGAAAGTGCGGTCGAGAAACACAGGGATG
TTATTGTTGAAGGGCTCCTCCACCTGGGTCGGCGCTGGAGTTTCAGCTTC
GGCGGCTGGCTGTTCCGAAGAAGACAGGGGAGAAGACGCTGGTGCGGCGT
CCTCCTGCACCTCTTGGTCGTTGGTGTCGGCGTTCGCGTCTTGCGCGGCT
CGCTCCATGATCCTTGCAGGGCGCTAGGCTGAAAGGCGTGCGTGGCTCCA
AAGGTTTGTCTGCTCCATGTAGTTTGCTGTCGTTGTTGTTGCCTACACCG
GGGACGCCGGGCCATGATGTGTCCAACACATCAAAGTTTGATGTGTTGGA
CACGATCGGATCTGTCACACTGAGAGTGCGGCCTGCGCTGCGGTGATCTG
CAATTTTGAAGTCTGCCGTCTTCCTGTCATAAACAGCCCGCGAAGGACTT
CGTTCCACCGCGCTTGCCCGCCGATCTCACTCACCTTCGAACGGCATCGC
AAACCCTCGCGTCCTTTCCCCCCCACTCTCTCATGCGCTCGTAGGTGCGT
TCTATATCTTGCTGCAGCCCGGAGAGCCCGAGCAGCCCACCCCAAGTAGA
ACTTGAGTCCTATTGATGAAATAAAAAAATAAATGAGCGAAAAGGCCGGG
CTGGTCCCGACGTCCTGACTATTTTTAGAAAGTGAGCCTGTCACCCGAGA
TTTGTCCCTATATGCTGTCTAGGAAATCGTAGACATAGAGGTAGTTTTCT
CTGACCCTATGATTCCATTTTTAATCTGTCTCTGACTCTTTTCTGTGATC
GAGATGGCACATCAGCCGCACATACTCCCCACATATGCATACCAAACTGA
GAATATGTTTGTAAACTGATGGAGAGTGCATGTCCTACAACTAATAATAG
GGTGCGACACACAAAACGCCCGACTACCCAACAGTACCCAACACCTTTCG
TCTGCACCTTCCCAACATAACATATATGAGACACACAAGACAGCTACCAA
ACTGATTTGTTGAGCCTGTTACCCACAGGGGAGATGTCCCTATATGCT
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protein sequence of EsuBft932_4a-0001

>EsuBft932_4 ID=EsuBft932_4|Name=EsuBft932_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MMKESPASDQQTMSSDTDSTMRKVRSRNTGMLLLKGSSTWVGAGVSASAA
GCSEEDRGEDAGAASSCTSWSLVSAFASCAARSMILAGR
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mRNA from alignment at Scaffold_489:630983..632080+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft932_4a-0001 ID=EsuBft932_4a-0001|Name=EsuBft932_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1098bp|location=Sequence derived from alignment at Scaffold_489:630983..632080+ (Ectocarpus subulatus male Bft15b)
CTGCTTGATGATGAAAGAATCCCCGGCTTCCGACCAGCAGACGATGTCAT
CCGACACGGACTCCACCATGCGGAAAGTGCGGTCGAGAAACACAGGGATG
TTATTGTTGAAGGGCTCCTCCACCTGGGTCGGCGCTGGAGTTTCAGCTTC
GGCGGCTGGCTGTTCCGAAGAAGACAGGGGAGAAGACGCTGGTGCGGCGT
CCTCCTGCACCTCTTGGTCGTTGGTGTCGGCGTTCGCGTCTTGCGCGGCT
CGCTCCATGATCCTTGCAGGGCGCTAGGCTGAAAGGCGTGCGTGGCTCCA
AAGGTTTGTCTGCTCCATGTAGTTTGCTGTCGTTGTTGTTGCCTACACCG
GGGACGCCGGGCCATGATGTGTCCAACACATCAAAGTTTGATGTGTTGGA
CACGATCGGATCTGTCACACTGAGAGTGCGGCCTGCGCTGCGGTGATCTG
CAATTTTGAAGTCTGCCGTCTTCCTGTCATAAACAGCCCGCGAAGGACTT
CGTTCCACCGCGCTTGCCCGCCGATCTCACTCACCTTCGAACGGCATCGC
AAACCCTCGCGTCCTTTCCCCCCCACTCTCTCATGCGCTCGTAGGTGCGT
TCTATATCTTGCTGCAGCCCGGAGAGCCCGAGCAGCCCACCCCAAGTAGA
ACTTGAGTCCTATTGATGAAATAAAAAAATAAATGAGCGAAAAGGCCGGG
CTGGTCCCGACGTCCTGACTATTTTTAGAAAGTGAGCCTGTCACCCGAGA
TTTGTCCCTATATGCTGTCTAGGAAATCGTAGACATAGAGGTAGTTTTCT
CTGACCCTATGATTCCATTTTTAATCTGTCTCTGACTCTTTTCTGTGATC
GAGATGGCACATCAGCCGCACATACTCCCCACATATGCATACCAAACTGA
GAATATGTTTGTAAACTGATGGAGAGTGCATGTCCTACAACTAATAATAG
GGTGCGACACACAAAACGCCCGACTACCCAACAGTACCCAACACCTTTCG
TCTGCACCTTCCCAACATAACATATATGAGACACACAAGACAGCTACCAA
ACTGATTTGTTGAGCCTGTTACCCACAGGGGAGATGTCCCTATATGCT
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Coding sequence (CDS) from alignment at Scaffold_489:630983..632080+

>EsuBft932_4a-0001 ID=EsuBft932_4a-0001|Name=EsuBft932_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_489:630983..632080+ (Ectocarpus subulatus male Bft15b)
ATGATGAAAGAATCCCCGGCTTCCGACCAGCAGACGATGTCATCCGACAC
GGACTCCACCATGCGGAAAGTGCGGTCGAGAAACACAGGGATGTTATTGT
TGAAGGGCTCCTCCACCTGGGTCGGCGCTGGAGTTTCAGCTTCGGCGGCT
GGCTGTTCCGAAGAAGACAGGGGAGAAGACGCTGGTGCGGCGTCCTCCTG
CACCTCTTGGTCGTTGGTGTCGGCGTTCGCGTCTTGCGCGGCTCGCTCCA
TGATCCTTGCAGGGCGCTAG
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