EsuBft931_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft931_5a-0001
Unique Name	EsuBft931_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_1244	contig	Scaffold_1244:76161..78991 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft931_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	283
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft931_5a	EsuBft931_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_1244 76161..78991 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft931_5a-0001-exon	EsuBft931_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_1244 76161..78991 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft931_5a-0001-exon	agat-three_prime_utr-23189	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_1244 76161..78361 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft931_5a-0001-cds	EsuBft931_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_1244 78362..78787 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft931_5a-0001-exon	agat-five_prime_utr-15084	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_1244 78788..78991 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft931_5a-0001	EsuBft931_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_1244 78362..78787 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_1244:76161..78991-
coding sequence from alignment at Scaffold_1244:76161..78991-

spliced messenger RNA

>EsuBft931_5a-0001 ID=EsuBft931_5a-0001|Name=EsuBft931_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2831bp|location=Sequence derived from alignment at Scaffold_1244:76161..78991- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGGCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACATTTGT
CTTTCAAAAACTTGGAACCTGTGTGCAGTCATTGTAAACGTGTGACGTGG
ACTTGTGCAACTTGTGTAACAAAAAATGACGCCGTCCGTGAGTTGTAGCG
CTCACTTCGAGACAACACACACGACACAACACAAACCGCGGAAAACACGA
CATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGA
CCAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTA
GGCGGTGGAGGCTTGGTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTC
GGGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGACTCGAACCCAT
GACCTGGCCCTTAGCAGGCTGCGAGGCTACCCACTAGACCACCGGGGCGA
CCGGGTATATGTGTTGTGGTGGCCAACCCGCCGTTGGGTAGCTACAGCAC
AATCACCTAGATTACCAGTTAGTCTACGGAAATAATGCAGAAGTCGTTCG
TACGGTAGATCTACTACATGTAGTCTACTACTATTACGGTTGTTGTTGTT
GTCTTCACATTAAACCGGATGTATGTCAGTTGCTAAATGCCAAAATCTAG
CAAAGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGATC
TAAAGAATACGCACACATATAACGAGAAAAAGGTATCCAAGAGCCCGGTG
AGGTACACCTAAAACTATTACGGTAGAACACAACAATCAAGACCAAATTG
GGCACTTACTTCCCGTTCTCTCTCAATTTTTTTTTTTCTGTCAAAATGCT
CTCTCCCGCGAAGTTGATAGAAAAACACACACTCTTTTGCAACTTTTGCA
CGCAATAATTGAGCAACGCACACACTGGGTGGGTTCAACAGAAATCCTGT
TACATCAGCTGTCGAATGGCGCTGGTTTCATGCCCATCGAACAATCACAG
CGCGAAGTGAACGGCGCCAAAAGCAGGCACTTCATGGCAGCAATTTTCAA
GCGGGCATACTTGTTGCGGTTCGGAAAAAATTAGGTTCTAAAATAGAACC
TGACGCAAACTGCTCAACATGGCGCGTACAA

protein sequence of EsuBft931_5a-0001

>EsuBft931_5 ID=EsuBft931_5|Name=EsuBft931_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=142bp
MDTDMDITTTQRGRQTKTPAKFQQTGSLGAAVGGGGLVSSKIVLLPGISG
NTHVTTGGAAATNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_1244:76161..78991-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft931_5a-0001 ID=EsuBft931_5a-0001|Name=EsuBft931_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2831bp|location=Sequence derived from alignment at Scaffold_1244:76161..78991- (Ectocarpus subulatus male Bft15b)
ACGGCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACATTTGT
CTTTCAAAAACTTGGAACCTGTGTGCAGTCATTGTAAACGTGTGACGTGG
ACTTGTGCAACTTGTGTAACAAAAAATGACGCCGTCCGTGAGTTGTAGCG
CTCACTTCGAGACAACACACACGACACAACACAAACCGCGGAAAACACGA
CATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGA
CCAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTA
GGCGGTGGAGGCTTGGTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTC
GGGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCNNN
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GACCTGGCCCTTAGCAGGCTGCGAGGCTACCCACTAGACCACCGGGGCGA
CCGGGTATATGTGTTGTGGTGGCCAACCCGCCGTTGGGTAGCTACAGCAC
AATCACCTAGATTACCAGTTAGTCTACGGAAATAATGCAGAAGTCGTTCG
TACGGTAGATCTACTACATGTAGTCTACTACTATTACGGTTGTTGTTGTT
GTCTTCACATTAAACCGGATGTATGTCAGTTGCTAAATGCCAAAATCTAG
CAAAGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGATC
TAAAGAATACGCACACATATAACGAGAAAAAGGTATCCAAGAGCCCGGTG
AGGTACACCTAAAACTATTACGGTAGAACACAACAATCAAGACCAAATTG
GGCACTTACTTCCCGTTCTCTCTCAATTTTTTTTTTTCTGTCAAAATGCT
CTCTCCCGCGAAGTTGATAGAAAAACACACACTCTTTTGCAACTTTTGCA
CGCAATAATTGAGCAACGCACACACTGGGTGGGTTCAACAGAAATCCTGT
TACATCAGCTGTCGAATGGCGCTGGTTTCATGCCCATCGAACAATCACAG
CGCGAAGTGAACGGCGCCAAAAGCAGGCACTTCATGGCAGCAATTTTCAA
GCGGGCATACTTGTTGCGGTTCGGAAAAAATTAGGTTCTAAAATAGAACC
TGACGCAAACTGCTCAACATGGCGCGTACAA

Coding sequence (CDS) from alignment at Scaffold_1244:76161..78991-

>EsuBft931_5a-0001 ID=EsuBft931_5a-0001|Name=EsuBft931_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=426bp|location=Sequence derived from alignment at Scaffold_1244:76161..78991- (Ectocarpus subulatus male Bft15b)
ATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCAA
AACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGCG
GTGGAGGCTTGGTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCGGGG
AACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCNNNNNNN
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