EsuBft931_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft931_4a-0001
Unique NameEsuBft931_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_1244contigScaffold_1244:72506..72909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft931_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length40
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft931_4aEsuBft931_4aEctocarpus subulatus male Bft15bgeneScaffold_1244 72506..72909 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_4a-0001-exonEsuBft931_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_1244 72506..72909 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_4a-0001-exonagat-three_prime_utr-23188Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_1244 72506..72526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_4a-0001-cdsEsuBft931_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_1244 72527..72901 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_4a-0001-exonagat-five_prime_utr-15083Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_1244 72902..72909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_4a-0001EsuBft931_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_1244 72527..72901 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft931_4a-0001 ID=EsuBft931_4a-0001|Name=EsuBft931_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=404bp|location=Sequence derived from alignment at Scaffold_1244:72506..72909- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCCGTACATGCCGACTTTCCAGCCGATCGAGCTGTTCTGGCAGCACGGC
AAGCATTACGTGAGCATTCATTTTGAGAAGGGGCGGAACATGTTGGATGT
CTGGAAGCAAATCCGTCTCGGTTGGTATGGAGACCCGGAATGGGACGGTC
AGGAGGGGGGGTGGAAGGCAGCCAACTGTGGAAAGTTGGTGCAGCATGCC
ATTGGCAAGATGGACGAGTGGATCGGCCTGTATGGTGGAAACCTGAGCGG
TACGATCGGTAGCCTTGAGTATCCAGTGGCAGAGTACCAAGAGGCTACGG
CCGAGGATGAGATAGAGGATGGGGTGGAGGAGCAGACGTATGAGTGGCTG
GGTGAGGACGCGGAAGATGCCATTGAGGGCTGAAAAAAAATGCCAAAAAA
CAAT
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protein sequence of EsuBft931_4a-0001

>EsuBft931_4 ID=EsuBft931_4|Name=EsuBft931_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPEWDGQEG
GWKAANCGKLVQHAIGKMDEWIGLYGGNLSGTIGSLEYPVAEYQEATAED
EIEDGVEEQTYEWLGEDAEDAIEG
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mRNA from alignment at Scaffold_1244:72506..72909-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft931_4a-0001 ID=EsuBft931_4a-0001|Name=EsuBft931_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=404bp|location=Sequence derived from alignment at Scaffold_1244:72506..72909- (Ectocarpus subulatus male Bft15b)
CGCCGTACATGCCGACTTTCCAGCCGATCGAGCTGTTCTGGCAGCACGGC
AAGCATTACGTGAGCATTCATTTTGAGAAGGGGCGGAACATGTTGGATGT
CTGGAAGCAAATCCGTCTCGGTTGGTATGGAGACCCGGAATGGGACGGTC
AGGAGGGGGGGTGGAAGGCAGCCAACTGTGGAAAGTTGGTGCAGCATGCC
ATTGGCAAGATGGACGAGTGGATCGGCCTGTATGGTGGAAACCTGAGCGG
TACGATCGGTAGCCTTGAGTATCCAGTGGCAGAGTACCAAGAGGCTACGG
CCGAGGATGAGATAGAGGATGGGGTGGAGGAGCAGACGTATGAGTGGCTG
GGTGAGGACGCGGAAGATGCCATTGAGGGCTGAAAAAAAATGCCAAAAAA
CAAT
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Coding sequence (CDS) from alignment at Scaffold_1244:72506..72909-

>EsuBft931_4a-0001 ID=EsuBft931_4a-0001|Name=EsuBft931_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_1244:72506..72909- (Ectocarpus subulatus male Bft15b)
ATGCCGACTTTCCAGCCGATCGAGCTGTTCTGGCAGCACGGCAAGCATTA
CGTGAGCATTCATTTTGAGAAGGGGCGGAACATGTTGGATGTCTGGAAGC
AAATCCGTCTCGGTTGGTATGGAGACCCGGAATGGGACGGTCAGGAGGGG
GGGTGGAAGGCAGCCAACTGTGGAAAGTTGGTGCAGCATGCCATTGGCAA
GATGGACGAGTGGATCGGCCTGTATGGTGGAAACCTGAGCGGTACGATCG
GTAGCCTTGAGTATCCAGTGGCAGAGTACCAAGAGGCTACGGCCGAGGAT
GAGATAGAGGATGGGGTGGAGGAGCAGACGTATGAGTGGCTGGGTGAGGA
CGCGGAAGATGCCATTGAGGGCTGA
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