EsuBft930_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft930_7a-0001
Unique NameEsuBft930_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_279contigScaffold_279:548005..548502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft930_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length49
Evalue1.76e-09
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft930_7aEsuBft930_7aEctocarpus subulatus male Bft15bgeneScaffold_279 548005..548502 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_7a-0001-exonEsuBft930_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_279 548005..548502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_7a-0001-cdsEsuBft930_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_279 548005..548502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_7a-0001EsuBft930_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_279 548005..548502 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft930_7a-0001 ID=EsuBft930_7a-0001|Name=EsuBft930_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=498bp|location=Sequence derived from alignment at Scaffold_279:548005..548502+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCAAAAGGGAT
CGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCAGA
CAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGATGGGAAGGCC
GACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCG
GAACAGTGCTTCGATATACGACATGCGACGGGCCAACCGCCAGCTCAAGA
TCCGGCTTCTCATGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCC
TCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCG
CCAGTTCCTTACACGGTGCATGGGCTGGAGCAAGCGGAAACGCTCAGACC
GCCCCCTGTCCTATGCCCAGGTCCTCATCATCCAGGCAGGCTGCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
back to top

protein sequence of EsuBft930_7a-0001

>EsuBft930_7 ID=EsuBft930_7|Name=EsuBft930_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKA
DREITSRSCRAWKCYRRNSASIYDMRRANRQLKIRLLMAEVVETLLYGCA
SWSLTAEHYTKLNGTHRQFLTRCMGWSKRKRSDRPLSYAQVLIIQAGCXX
XXXXXXXXXXXXXXXX
back to top

mRNA from alignment at Scaffold_279:548005..548502+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft930_7a-0001 ID=EsuBft930_7a-0001|Name=EsuBft930_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=498bp|location=Sequence derived from alignment at Scaffold_279:548005..548502+ (Ectocarpus subulatus male Bft15b)
ATGGTGTCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCAAAAGGGAT
CGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCAGA
CAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGATGGGAAGGCC
GACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCG
GAACAGTGCTTCGATATACGACATGCGACGGGCCAACCGCCAGCTCAAGA
TCCGGCTTCTCATGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCC
TCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCG
CCAGTTCCTTACACGGTGCATGGGCTGGAGCAAGCGGAAACGCTCAGACC
GCCCCCTGTCCTATGCCCAGGTCCTCATCATCCAGGCAGGCTGCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
back to top

Coding sequence (CDS) from alignment at Scaffold_279:548005..548502+

>EsuBft930_7a-0001 ID=EsuBft930_7a-0001|Name=EsuBft930_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_279:548005..548502+ (Ectocarpus subulatus male Bft15b)
ATGGTGTCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCAAAAGGGAT
CGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCAGA
CAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGATGGGAAGGCC
GACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCG
GAACAGTGCTTCGATATACGACATGCGACGGGCCAACCGCCAGCTCAAGA
TCCGGCTTCTCATGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCC
TCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCG
CCAGTTCCTTACACGGTGCATGGGCTGGAGCAAGCGGAAACGCTCAGACC
GCCCCCTGTCCTATGCCCAGGTCCTCATCATCCAGGCAGGCTGCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
back to top