EsuBft930_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft930_6a-0001
Unique Name	EsuBft930_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_279	contig	Scaffold_279:550115..560023 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FJ57
ProteomeId	EsuBft930_6
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	IPR023352
Protein domains	IPR001129
Protein domains	SIGNAL_PEPTIDE
Protein domains	SSF161084
Protein domains	TRANSMEMBRANE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	150
Hectar predicted targeting category	other localisation
Evalue	2.5e-109
EggNOG OGs	2EA41@1\|root,2SGDD@2759\|Eukaryota
Ec32 ortholog description	Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein
Ec32 ortholog	Ec-10_000190.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	MAPEG family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft930_6a	EsuBft930_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_279 550115..560023 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft930_6a-0001	EsuBft930_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_279 551095..560023 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft930_6a-0001-exon	agat-exon-27307	Ectocarpus subulatus male Bft15b	exon	Scaffold_279 550115..551152 -
EsuBft930_6a-0001-exon	agat-exon-27305	Ectocarpus subulatus male Bft15b	exon	Scaffold_279 551814..551884 -
EsuBft930_6a-0001-exon	EsuBft930_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_279 552420..552611 -
EsuBft930_6a-0001-exon	agat-exon-27306	Ectocarpus subulatus male Bft15b	exon	Scaffold_279 559820..560023 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft930_6a-0001-exon	agat-three_prime_utr-23183	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_279 550115..551094 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft930_6a-0001-cds	EsuBft930_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_279 551095..551152 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_279:550115..560023-
coding sequence from alignment at Scaffold_279:550115..560023-

spliced messenger RNA

>EsuBft930_6a-0001 ID=EsuBft930_6a-0001|Name=EsuBft930_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1505bp|location=Sequence derived from alignment at Scaffold_279:550115..560023- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGGGAGGGAAGGCCGCCGCAGCGGCGGCGGCGGCGGCGGCGGC
AACGGCGGAGGAGACGTCCTCGAGGGTGGGACCTAACGTGGTCCACGGAG
TGCGGGTGACGCTAGCCTACCTCGTGCTGTACTACTTCTTCATTGTTGCG
CAAGGGTCCATGAAGCGGAAGCTGCGCGCGTACAACGCGGCACATGGCAA
GAAGTTCGACCGCTACTTCAGCCGGGATCGGAAAATGTTAGGGTGGGATC
GCACAGTGGGCAACATGCTGGAGCAGATGGGGCCCTTCTTGTCACTGTTT
TGGTCGAACATCTGGCTCTCGCCTTACGGAGGACTGCCGCACGCGTACAT
CGCAGCTCTAGGGTGGCTGTATGTCCTGCTTCGATCCTTTTATCCGATGT
TATGGTTTGCCGGAGGAGGGGGGTCGGAGGGCACGTCCCCTACCATCTGG
AGAGTGACGATGCCCATGTACGTGATCATCCTGGTGTTTGCCGTTAACGC
GGCAATCGTCATCTACGGCGCATGACTCACGGACGAAGAACGTGGCGGGC
AACTGCTGTGATTGATGGCCGTCAGTGATACAGCGGAGCTATGGGGATGC
GCTTATATATAGAAATGACCAGAGATCGGGATGAGGTTGATTGCAGGTCT
GGCGCCAACTTTGCGGCGGGCATCTTTGGATGTACAAACGACCTTGATTA
ACCTCAAACAGCCGAAAATGGCTCTGATGGACGACTTCGCCATGAAGTTG
CCATTTATAGCCGAAAGCAGCGAGCGCTATACCGGTCGGAGGGGACCCCG
TGCGTGGCCCTTCGCTTTGAGCTGCACCGCGAAGAAGCTTGATATCGTCC
ATCTCGCGGGCAGCGAAATGGCGGGAAATGAAACTGTGTATGATGGGAAT
TTTCCTTGCCGTCAACAGAGGGATGTTCGGCCGTGCAGTGGTGGCGGATT
CGCACTGTTGTAGACATACTGTAGGCTAGACCTTCAACCGCTTGAACCGG
GCATGTCATGGAACTACACGTACTGTACGGATGGTGCATGATTGATTTTT
GTAGTGGGGTGGTTAAGGGTTCAGCTTTGACGATCGTGCGCTGTACATAG
TGTGGGATTTTGTGTTCCTCCAGCAATGTCTTGTTATTGGTGATTTCCCT
GCCGTAAGGTTTTAGTTTAACTACTCTTCTTGTAGTCGGAAGGTGTGGGC
GCTGTCGCATTGCAAGCTACGTTTCCTCCCGGTAGAATGGTGATGTGTTT
CTCCGGTTTACACAGCAGTGGGTGGACTCCCCCATAAAGATTGTGTCAGT
AAGAAGAGCGAGAGCTACCTGTAAAGCATTGAGTGGCAGTAGTAGCATCC
GCAGCCTTTGCAGGGCACGTGACGCACGTAACGGCCAAGCAGTTTCAACG
AATTTTCCTTGCGCAATGTAATAGCGACATCGCTTCTTCCACCCCCCACC
CTGTGCACACAATATCGTCCCCCCCCCCCGAGTTTTCCTCTAGTGCCCGC
CATTT

protein sequence of EsuBft930_6a-0001

>EsuBft930_6 ID=EsuBft930_6|Name=EsuBft930_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=174bp
MGKGGKAAAAAAAAAAATAEETSSRVGPNVVHGVRVTLAYLVLYYFFIVA
QGSMKRKLRAYNAAHGKKFDRYFSRDRKMLGWDRTVGNMLEQMGPFLSLF
WSNIWLSPYGGLPHAYIAALGWLYVLLRSFYPMLWFAGGGGSEGTSPTIW
RVTMPMYVIILVFAVNAAIVIYGA

mRNA from alignment at Scaffold_279:550115..560023-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft930_6a-0001 ID=EsuBft930_6a-0001|Name=EsuBft930_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=9909bp|location=Sequence derived from alignment at Scaffold_279:550115..560023- (Ectocarpus subulatus male Bft15b)
ATGGGCAAGGGAGGGAAGGCCGCCGCAGCGGCGGCGGCGGCGGCGGCGGC
AACGGCGGAGGAGACGTCCTCGAGGGTGGGACCTAACGTGGTCCACGGAG
TGCGGGTGACGCTAGCCTACCTCGTGCTGTACTACTTCTTCATTGTTGCG
CAAGGGTCCATGAAGCGGAAGCTGCGCGCGTACAACGCGGCACATGGCAA
GAAGGTAGAAAACGCTCGCAAGTCTTGCGCTGCTATGCTCCACCGCTCGC
TGTGAATGTTGCTTTGCTTCGCAGGTAGAAGTAGAAAATTGTGAATTGTG
GTGGTATAGACTATGGGTGTGTGTTTTCGTCCTATTTTTTATGGCGACAG
TCCCCCCATTTTTCGTGGTGAGACGTGTACTACATTGTTCAGCGTATGTA
GAGTACTACACTTTTCAGTGTTACGTACAACAACTGCATCCGTGCAGGGT
CACACAGGAGGGGGTATCCACCAGGGCTTTTTTTCTTCTTTTTATTTCTT
TTCATGCCCCACCTGCCTCCTGCGGTGCGTGCTGAATTTTTGTTTTTATC
GCGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGCTAGCGCCGA
AGTTTGGTACCCGCGGGAGCTTTTTTGCCATACCTCGCTCTCACCCGCAA
ATTTCGTAAATTTTCCATCCCAAGGAGATTCGAACTCACGACCTCTGCAA
CCGGTGCATTACGAGGATACCACTTGACCACCGGGGCGACCGGAGACTAG
TGGTATATACATATTGAATCGTTTGTTCTTTTGATCTGGACTCGTATCTG
TGGACACGGATGACTTGTCGTCCTAAACCTAACCCTTACCCTAACCCTAA
CCCTTATCCACAAACCGAATAGGTTAGTATCGCCCACAAGTTCTTACAAG
TATACTATTCTTCGTAGGCTGGATATACCATCCGTGGTATTCGTTGTAGT
TTTTTCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CGCAAGGGGGATGATCGCAACACGTGTTAAAATGGTCAAGCATCCTCGAG
GCAGTTCCACAGTGCTTGCAACTGTCTCTGGAAGTGAAAGCACCATAAAG
TAAATCAAGTCATACGCAGCTGTCATCCGTATGCAAGGAAGTAAGCACAA
GATGCCGAAAACCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCC
GAATATCTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTG
AGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGT
CTAACGACTACGGCATGCACGACTATGAGTACACCCCCCCCCCATATTTT
TTGGTATATCCCATGTTTGTTCCCCGGTAGTGTTTGTTGTTCATGTAAGA
ACATTCAGTATTAGAAACGTTTTTGTCACATGTACTTTTTGTGCGTGACG
CTCCTGACTCAGTTCGACCGCTACTTCAGCCGGGATCGGAAAATGTTAGG
GTGGGATCGCACAGTGGGCAACATGCTGGAGCAGATGGGGCCCTTCTTGT
CACTGTTTTGGTCGAACATCTGGCTCTCGCCTTACGGAGGACTGCCGCAC
GCGTACATCGCAGCTCTAGGGTGGCTGTATGTCCTGCTTCGATCCTTTTA
TCCGGTGAGCAGCGCTCGAATCATCTATCTGTGACTGGCTTGTGTGCCGG
CCGAGGATCTTATCATTTCTATTCTCCGTCGCTATTGTTGCCCGTGTTGT
GCGGTTGGTCAGATGGGCGCTACGGAGACTATCGCGGCCGGAACCCGGGA
GGTTGATGAAGTCTTGGCCGTTAGTCGCAATGCTGCATTTGTTTCCCTTC
CCGTGGTGAATGGACCAATTGCGGTGTTCCTTGCAGGATACACCTTTGCT
TGCAATATCTTGTACCCATTGGTGTATTGGACCTTCCCGCACGTGCACCT
CTATTGTAAGTCGTTTATTGTTTATTTTTTCATGTGTCTTGTACCTTCCC
GTGGTACATTTTTCATGTGCTGTCCGTTTGCATGTATCTAGGGGTTCAAC
GTAGTGCTCTTGCAGTCAGTCCTACACAGTGCATTTTGTTTTGTTTGTGT
TTGTTGAGAATTTCGTTCTCCCCCTTTCCTTACTTTTCTCTCCCTTCTGC
TTTGTACCTTTCCTGTCCATTGTTGCGTGGCGCGGGCAGATGTTATGGTT
TGCCGGAGGAGGGGGGTCGGAGGGCACGTCCCCTACCATCTGGAGAGTGA
CGATGCCCATGTAAACAACACATTTCGATGCACCTTTAGGTCTACCACTG
ACCGTGGAAATGTTGAGCGTTCGATTATGACGTCGGCCTTTTTGCACGGT
TAGAGCCCCCATGCTTCAGGACAGCGAGCTCAAGAGGTCTTCCGGAATGA
CCTGTAGAGACTCGTGGGCCTTAGGTTTTGGGAAGGAAGGAAACGTGGCC
GTCGTGTTGACCGGTGGCAATTTTCCGGGCACGTTGTTCTGCTTTTTGGT
GTTTTTACGAAATGACAGCGACCTGTTGGGTGAAAGATCACCGGTGGATG
GTGAGCTGGCTCAGCCTTTTACAAATCGCCACATGGCGCGCTTCTGTTGT
AGCCACGCTTTCATGAAGGATTAGTCTAACCAATGGCCACGGGTGGCCTA
TGTGTGATGATGAGCCAGGGGGTCACAGATAGTCTACAGAGAATTACACA
GCACAAGTGTAGCAGCAGTCTATCACTTTGCGCGACATTCTAGGTTGCCT
CGTAATACTTGATGGTAGTAGGTAAAATCGAGGCTAAGCATTTTTACCGG
GCGAGTACCCCCGCTCCTTGGAACCACCTTGTAGTGTAGCAGGACTTGTT
CAGGGCAGGCGCTGCCTACGCTAGCTAGCTTCCGTCTTCGATGCATGTCT
AACATTTTCTGTCCTCACCAGGTACGTGATCATCCTGGTGTTTGCCGTTA
ACGCGGCAATCGTCATCTACGGCGCATGACTCACGGACGAAGAACGTGGC
GGGCAACTGCTGTGATTGATGGCCGTCAGTGATACAGCGGAGCTATGGGG
ATGCGCTTATATATAGAAATGACCAGAGATCGGGATGAGGTTGATTGCAG
GTCTGGCGCCAACTTTGCGGCGGGCATCTTTGGATGTACAAACGACCTTG
ATTAACCTCAAACAGCCGAAAATGGCTCTGATGGACGACTTCGCCATGAA
GTTGCCATTTATAGCCGAAAGCAGCGAGCGCTATACCGGTCGGAGGGGAC
CCCGTGCGTGGCCCTTCGCTTTGAGCTGCACCGCGAAGAAGCTTGATATC
GTCCATCTCGCGGGCAGCGAAATGGCGGGAAATGAAACTGTGTATGATGG
GAATTTTCCTTGCCGTCAACAGAGGGATGTTCGGCCGTGCAGTGGTGGCG
GATTCGCACTGTTGTAGACATACTGTAGGCTAGACCTTCAACCGCTTGAA
CCGGGCATGTCATGGAACTACACGTACTGTACGGATGGTGCATGATTGAT
TTTTGTAGTGGGGTGGTTAAGGGTTCAGCTTTGACGATCGTGCGCTGTAC
ATAGTGTGGGATTTTGTGTTCCTCCAGCAATGTCTTGTTATTGGTGATTT
CCCTGCCGTAAGGTTTTAGTTTAACTACTCTTCTTGTAGTCGGAAGGTGT
GGGCGCTGTCGCATTGCAAGCTACGTTTCCTCCCGGTAGAATGGTGATGT
GTTTCTCCGGTTTACACAGCAGTGGGTGGACTCCCCCATAAAGATTGTGT
CAGTAAGAAGAGCGAGAGCTACCTGTAAAGCATTGAGTGGCAGTAGTAGC
ATCCGCAGCCTTTGCAGGGCACGTGACGCACGTAACGGCCAAGCAGTTTC
AACGAATTTTCCTTGCGCAATGTAATAGCGACATCGCTTCTTCCACCCCC
CACCCTGTGCACACAATATCGTCCCCCCCCCCCGAGTTTTCCTCTAGTGC
CCGCCATTT

Coding sequence (CDS) from alignment at Scaffold_279:550115..560023-

>EsuBft930_6a-0001 ID=EsuBft930_6a-0001|Name=EsuBft930_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=525bp|location=Sequence derived from alignment at Scaffold_279:550115..560023- (Ectocarpus subulatus male Bft15b)
ATGGGCAAGGGAGGGAAGGCCGCCGCAGCGGCGGCGGCGGCGGCGGCGGC
AACGGCGGAGGAGACGTCCTCGAGGGTGGGACCTAACGTGGTCCACGGAG
TGCGGGTGACGCTAGCCTACCTCGTGCTGTACTACTTCTTCATTGTTGCG
CAAGGGTCCATGAAGCGGAAGCTGCGCGCGTACAACGCGGCACATGGCAA
GAAGTTCGACCGCTACTTCAGCCGGGATCGGAAAATGTTAGGGTGGGATC
GCACAGTGGGCAACATGCTGGAGCAGATGGGGCCCTTCTTGTCACTGTTT
TGGTCGAACATCTGGCTCTCGCCTTACGGAGGACTGCCGCACGCGTACAT
CGCAGCTCTAGGGTGGCTGTATGTCCTGCTTCGATCCTTTTATCCGATGT
TATGGTTTGCCGGAGGAGGGGGGTCGGAGGGCACGTCCCCTACCATCTGG
AGAGTGACGATGCCCATGTACGTGATCATCCTGGTGTTTGCCGTTAACGC
GGCAATCGTCATCTACGGCGCATGA