EsuBft930_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft930_5a-0001
Unique NameEsuBft930_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_279contigScaffold_279:563853..565474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FJ56
ProteomeIdEsuBft930_5
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsIPR009305
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized endoplasmic reticulum membrane protein os:schizosaccharomyces pombe (strain 972 atcc 24843) gn: pe:4 sv:2 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length721
Hectar predicted targeting categorysignal anchor
Evalue7.97e-122
EggNOG OGsCOG4539@1|root,KOG3292@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF962
Ec32 orthologEc-10_000180.1
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0030149,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046466,GO:0046519,GO:0046521,GO:0071704,GO:0097164,GO:0098827,GO:1901564,GO:1901565,GO:1901575
Descriptionsphingoid catabolic process
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft930_5aEsuBft930_5aEctocarpus subulatus male Bft15bgeneScaffold_279 563853..565474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_5a-0001EsuBft930_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_279 563959..565474 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_5a-0001-exonagat-exon-27304Ectocarpus subulatus male Bft15bexonScaffold_279 563853..564108 -
EsuBft930_5a-0001-exonagat-exon-27303Ectocarpus subulatus male Bft15bexonScaffold_279 564245..564251 -
EsuBft930_5a-0001-exonagat-exon-27302Ectocarpus subulatus male Bft15bexonScaffold_279 564455..564668 -
EsuBft930_5a-0001-exonEsuBft930_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_279 565231..565474 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_5a-0001-exonagat-three_prime_utr-23182Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_279 563853..563958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_5a-0001-cdsEsuBft930_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_279 563959..564108 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft930_5a-0001 ID=EsuBft930_5a-0001|Name=EsuBft930_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=721bp|location=Sequence derived from alignment at Scaffold_279:563853..565474- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAGCAACGGCTTTGACCCGTCTCTCTTGCTTCGTCGCGCAGACCA
CAGCAACCGGGTCAACAAGTTCATCCATCTGCTATGTATCTGGCCCATAA
TCTGGACCGGCTGCGCCCTCATGACTCAGTGTTCTTTCGGAAAGCTTCCC
TCGGAAGTCTTGGAGCAGCTTCCCCTTAGGGACGAAGCCTGGAACCTGCA
CCTTGGTACTCCGGTTGTGATGGTCTACATCTTCGTCTATTTGGTGATGG
ACCCCTTCGCGGGGGGCGTGGCCTCGCTCATGATGGCTTCGACGTACCTC
ACGAGCAACCTGTGGATGGCTGGCGGAGGCTCCGCACGCCTGGCAACCGC
CGCGCACATCGGGTGCTGGCTAGCACAGTTCTACGGGCACGCCGCCCACG
AGGGAAGGGCGCCGGCGCTCCTCGACAACCTCTTCCAGGCAAGAAGAATG
TGGCCTTGGTCTTGGGCTTTCTTGGCATCACCGCTGTTCGTTGTGTGTGA
GGTGCTCTTCGACCTCGGGTACAAGAAGGACCTGCAAAAGCGGATGAAGA
TCAAGGCTGATGCCAACATCGCCGAGTTCCGCGCATCTAAGGCTGCTGCG
GTCAAGAAGGACTGATGGCATACATGAAGGCGTTCTTCTTCGCGCTCCGG
CGGTGTGTGGCTACGATATTTGCTGCGGTGGGCTTCCACGAACTAGAAGT
AGATGTGCTAATCGGGTACAG
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protein sequence of EsuBft930_5a-0001

>EsuBft930_5 ID=EsuBft930_5|Name=EsuBft930_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=204bp
MLSNGFDPSLLLRRADHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLP
SEVLEQLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVASLMMASTYL
TSNLWMAGGGSARLATAAHIGCWLAQFYGHAAHEGRAPALLDNLFQARRM
WPWSWAFLASPLFVVCEVLFDLGYKKDLQKRMKIKADANIAEFRASKAAA
VKKD
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mRNA from alignment at Scaffold_279:563853..565474-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft930_5a-0001 ID=EsuBft930_5a-0001|Name=EsuBft930_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1622bp|location=Sequence derived from alignment at Scaffold_279:563853..565474- (Ectocarpus subulatus male Bft15b)
ATGCTAAGCAACGGCTTTGACCCGTCTCTCTTGCTTCGTCGCGCAGACCA
CAGCAACCGGGTCAACAAGTTCATCCATCTGCTATGTATCTGGCCCATAA
TCTGGACCGGCTGCGCCCTCATGACTCAGTGTTCTTTCGGAAAGCTTCCC
TCGGAAGTCTTGGAGCAGCTTCCCCTTAGGGACGAAGCCTGGAACCTGCA
CCTTGGTACTCCGGTTGTGATGGTCTACATCTTCGTCTATTTGGGTGAGA
ACTGAAGGTTTTAGGTATTCTGGGGAGCATGCGCAGCCTTCTCAAGTTTT
TTCGCTCAAAACAAGGGCAATTTCTAGCGTCGAGTATGCCTGTGCTCTCA
CACCAAGATGCTTTCAATGCAATGGCTCCGGCTGCCCTTGTTGAGCTGTT
CCCAAAGATGTTTACTGTTGTAACAGACAAGTGCACGTTGAAACGTTCCT
GTCGAGCTGCTACAGTTTTCTCTCGTGCAACATCCAACGCCATGACACGC
GACCAACTGTTTTGTGTGACAGCACTTGCGTGCGCACACCGACCAACCAC
TACCGTAGACCTCTTGTTGTGTCCATGATAATCAGAGCGGCTATCTCAGA
CGGCATCTCACTCTTCAGACAAGCGTATAATAGCGAATTCTTCGAGTACT
TACAGTCCTCCTGTTTGTCCCCCAAACTACCATCAATCATGTAGCTCCTA
TCGCTCTGACGTATGATGTCGCCTCTGGTCGTACAGCAACACGGTACAAA
CTATGTGCCGTTCCAACTTACCTGCCGTTTCGACTTACTTGCCATTGTTG
TGGCAGTGATGGACCCCTTCGCGGGGGGCGTGGCCTCGCTCATGATGGCT
TCGACGTACCTCACGAGCAACCTGTGGATGGCTGGCGGAGGCTCCGCACG
CCTGGCAACCGCCGCGCACATCGGGTGCTGGCTAGCACAGTTCTACGGGC
ACGCCGCCCACGAGGGAAGGGCGCCGGCGCTCCTCGACAACCTCTTCCAG
GCAAGAAGAATGTGGCCTTGGTTCTCTACGTCAAGCTCGATGTTACTCTG
TACCACCCACTGTAGTATCGCACTTCGCTTTGGTAGTGTGCTGTACCTGT
GCTGAGTTGAACCACTTTCGAATTCGTCCCGCGGGATGGCGCGGTTGCGG
CTTCTGCAGAGAAAAAGTATCGTGCCTGTCAGCGTTGGACTTCTTCACCG
AAATATTGTTTCGTCCGAGAGAGGTCTTGGGTATGTGTAGGGTCACAGTG
TTGAGAGTGTTCCAAGGACAAGGGCCGCTGGCTGTTCTTCAGGAAAGCTT
AGTTTTTCACCTTTCTTTCGGGCAACCTCTTACCCCCCCTTCCCTTCCTA
CTGCTGCTGCTGGCAGGCTTTCTTGGCATCACCGCTGTTCGTTGTGTGTG
AGGTGCTCTTCGACCTCGGGTACAAGAAGGACCTGCAAAAGCGGATGAAG
ATCAAGGCTGATGCCAACATCGCCGAGTTCCGCGCATCTAAGGCTGCTGC
GGTCAAGAAGGACTGATGGCATACATGAAGGCGTTCTTCTTCGCGCTCCG
GCGGTGTGTGGCTACGATATTTGCTGCGGTGGGCTTCCACGAACTAGAAG
TAGATGTGCTAATCGGGTACAG
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Coding sequence (CDS) from alignment at Scaffold_279:563853..565474-

>EsuBft930_5a-0001 ID=EsuBft930_5a-0001|Name=EsuBft930_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_279:563853..565474- (Ectocarpus subulatus male Bft15b)
ATGCTAAGCAACGGCTTTGACCCGTCTCTCTTGCTTCGTCGCGCAGACCA
CAGCAACCGGGTCAACAAGTTCATCCATCTGCTATGTATCTGGCCCATAA
TCTGGACCGGCTGCGCCCTCATGACTCAGTGTTCTTTCGGAAAGCTTCCC
TCGGAAGTCTTGGAGCAGCTTCCCCTTAGGGACGAAGCCTGGAACCTGCA
CCTTGGTACTCCGGTTGTGATGGTCTACATCTTCGTCTATTTGGTGATGG
ACCCCTTCGCGGGGGGCGTGGCCTCGCTCATGATGGCTTCGACGTACCTC
ACGAGCAACCTGTGGATGGCTGGCGGAGGCTCCGCACGCCTGGCAACCGC
CGCGCACATCGGGTGCTGGCTAGCACAGTTCTACGGGCACGCCGCCCACG
AGGGAAGGGCGCCGGCGCTCCTCGACAACCTCTTCCAGGCAAGAAGAATG
TGGCCTTGGTCTTGGGCTTTCTTGGCATCACCGCTGTTCGTTGTGTGTGA
GGTGCTCTTCGACCTCGGGTACAAGAAGGACCTGCAAAAGCGGATGAAGA
TCAAGGCTGATGCCAACATCGCCGAGTTCCGCGCATCTAAGGCTGCTGCG
GTCAAGAAGGACTGA
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