EsuBft930_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft930_3a-0001
Unique NameEsuBft930_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_279contigScaffold_279:581248..583166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft930_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length99
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000160.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft930_3aEsuBft930_3aEctocarpus subulatus male Bft15bgeneScaffold_279 581248..583166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_3a-0001-exonagat-exon-27292Ectocarpus subulatus male Bft15bexonScaffold_279 581248..581257 -
EsuBft930_3a-0001-exonagat-exon-27291Ectocarpus subulatus male Bft15bexonScaffold_279 581304..581817 -
EsuBft930_3a-0001-exonEsuBft930_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_279 582693..583166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_3a-0001-cdsEsuBft930_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_279 581248..581257 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_3a-0001-exonagat-five_prime_utr-15076Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_279 582790..583166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft930_3a-0001EsuBft930_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_279 581248..582789 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft930_3a-0001 ID=EsuBft930_3a-0001|Name=EsuBft930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=998bp|location=Sequence derived from alignment at Scaffold_279:581248..583166- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCCTTGCTTGCGACCAGCACGACTGCAACGACTGCACGCGTGACAGC
TTGCGGCTGTACACCCAAGTCGCATTCCTTGCTTTTGTCTGGCTGCTATC
CCTCAGGAGCCGGATACAACATCAAAATCTGCAAGGAGGCGCGCGGTACA
AACGATTTCTCGCGCGAAATTGGCAAACGGTCGTTTGGCGGGAAATATAA
GGGTGTAGGTGTTGTCCTGCCAGTAGCTGTCGAGAGGGAGGGAGGGAGGG
ACAGGGAGAAGCGGCGCACTCATCAAGACAGTGGCTGGGACAGCAAAGAC
ATCGGTGCTGCACCCCTGCAGTTTGTTCTGCTGCCTAGGGTGCATCGTGC
GTCAATCGACACCTGAGCTACAACATCATGTTGAGCAAGTGGAATGCCGA
GAACATCAACCAAGTCGGACCGTCTCAGCGTGGGCTCGGCGGAGGCAAGA
GCTTCAAGCCTCTAGGCGATGCAGGATCGTCAGAGAACCCTCCCTCAGCT
TCCGGGAAGGGCATTCTTCAGCGCAAGCTCAAACCCCTGGGCAGCTACTC
CGAAAACGCACCGCCTTCGGCCGCGAAAGGAAAAGCGGCCGGCGGTGGAG
GGGGGCTCGGAGGCCTTCCCCCGAACTCTTCCGCCAAGAAACAGCCGCGA
CGGGCGCTAGGCGACATCTCAAACGCGGGCAACGCCCCTCCGCCAGTGGC
GACCAACAACGCCCCGTCCAAGCTCTCGGGGAAGCAGCCGCTCCTCGCCC
CTGGGTTGAAATTTACCGTACACAGCGATTCGAACAAGGCGGCGGCGGGG
AGGGCGGTAAGGCCGCGAGGCGCAGGATCAAGGGTCGTAGCGAGCGGGAG
CGGAAGGAGCGTGCTAGGGTCGAATGGGCGCGTGGATGACATCGAGCTCC
CTCTCGGTAGGACCGGAGACGAGGAGGAGGTGCTCGTGGAGAGACGCGCG
GAGGAGAGAGCGGCTGAGAAGTTCGCCAGGCCTCACAGGGTACCGTAG
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protein sequence of EsuBft930_3a-0001

>EsuBft930_3 ID=EsuBft930_3|Name=EsuBft930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=206bp
MLSKWNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKGILQRK
LKPLGSYSENAPPSAAKGKAAGGGGGLGGLPPNSSAKKQPRRALGDISNA
GNAPPPVATNNAPSKLSGKQPLLAPGLKFTVHSDSNKAAAGRAVRPRGAG
SRVVASGSGRSVLGSNGRVDDIELPLGRTGDEEEVLVERRAEERAAEKFA
RPHRVP
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mRNA from alignment at Scaffold_279:581248..583166-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft930_3a-0001 ID=EsuBft930_3a-0001|Name=EsuBft930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1919bp|location=Sequence derived from alignment at Scaffold_279:581248..583166- (Ectocarpus subulatus male Bft15b)
CTCTCCTTGCTTGCGACCAGCACGACTGCAACGACTGCACGCGTGACAGC
TTGCGGCTGTACACCCAAGTCGCATTCCTTGCTTTTGTCTGGCTGCTATC
CCTCAGGAGCCGGATACAACATCAAAATCTGCAAGGAGGCGCGCGGTACA
AACGATTTCTCGCGCGAAATTGGCAAACGGTCGTTTGGCGGGAAATATAA
GGGTGTAGGTGTTGTCCTGCCAGTAGCTGTCGAGAGGGAGGGAGGGAGGG
ACAGGGAGAAGCGGCGCACTCATCAAGACAGTGGCTGGGACAGCAAAGAC
ATCGGTGCTGCACCCCTGCAGTTTGTTCTGCTGCCTAGGGTGCATCGTGC
GTCAATCGACACCTGAGCTACAACATCATGTTGAGCAAGTGGAATGCCGA
GAACATCAACCAAGTCGGACCGTCTCAGCGTGGGCTCGGCGGAGGCAAGA
GCTTCAAGCCTCTAGGCGATGCAGGTGCGGGAAGGTCACGGCTGTAGTTT
CCCTCGTGTGCGGGTGTTGTTACCCAGGGGTCTGCGCCTGCTGTCAGCAT
GTAGGGTAGATAGAGAGCAACACAACGAGTGCATCTGGACAAACGCGAGC
GACGTGAGCAGCCCTGTGAGCGGAAAAACGTACTCTGGCTGTGCCGTGCG
GCAGCACTCCCTGGGCCAAAGCCCCCTGCCACTCCTGCGTACAATCTGGC
AAAGAGGTGGAAGCGTTGCCAAGGTGTTGCGTAGAGTAGACAGAGTTCCA
GAGGTACGGTGCAGCACTGACTGCTGTTGCTCGCGGCCGTGCGGTGCCAT
ACCGCTGTAGACGACCGTGTGGTGCACCCGTTGACCGATTTCAAAGCTCG
ATTGCTCTGCAGCAAAGCCAGTGACGGTGCCGGACAATATCATACCATCG
TTGGAACCGTGTCGTGGGGCGCTTTCCGAAAATGTATTATCTGATTATTG
CACCCTCATTATCGTGGAGTGTATTGTATGCATAGGGCTTTGATCATCGA
TCCGGCGGATGTGGTATCTTGTGTCATATCACCAACCGAGTGTTTCTCGA
TCATCAGGCAGAGCGTTTAGGAGGCTGTGTATGCACTTGCTCGTGTTTTC
GTCCCCAATATGTTGGCGCCAGTCTTCACACTCTTCGGTGCATATTGCTC
ACGCACATCAGCCGAGATCACACAAGATGTTCGTTTTATTGCGTCTGTCG
TTTGATTGCCCCCACCTCTCCTCGTGCAGCGGTTTGCCACAAACCAACCC
ACAAACCAACCCACAAACCAACCCACAAACCAACCCACAAACCAACAAAT
GGAATTGCTGAATGGTTGCTGTTGAACTTTCGCGACGCTTTGCACCCAGG
ATCGTCAGAGAACCCTCCCTCAGCTTCCGGGAAGGGCATTCTTCAGCGCA
AGCTCAAACCCCTGGGCAGCTACTCCGAAAACGCACCGCCTTCGGCCGCG
AAAGGAAAAGCGGCCGGCGGTGGAGGGGGGCTCGGAGGCCTTCCCCCGAA
CTCTTCCGCCAAGAAACAGCCGCGACGGGCGCTAGGCGACATCTCAAACG
CGGGCAACGCCCCTCCGCCAGTGGCGACCAACAACGCCCCGTCCAAGCTC
TCGGGGAAGCAGCCGCTCCTCGCCCCTGGGTTGAAATTTACCGTACACAG
CGATTCGAACAAGGCGGCGGCGGGGAGGGCGGTAAGGCCGCGAGGCGCAG
GATCAAGGGTCGTAGCGAGCGGGAGCGGAAGGAGCGTGCTAGGGTCGAAT
GGGCGCGTGGATGACATCGAGCTCCCTCTCGGTAGGACCGGAGACGAGGA
GGAGGTGCTCGTGGAGAGACGCGCGGAGGAGAGAGCGGCTGAGAAGTTCG
CCAGGCCTCACAGGTGAGCAAGGACATGATGGCTGCACAGCTGCTGTCCA
CAGCAGCAGGGTACCGTAG
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Coding sequence (CDS) from alignment at Scaffold_279:581248..583166-

>EsuBft930_3a-0001 ID=EsuBft930_3a-0001|Name=EsuBft930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=621bp|location=Sequence derived from alignment at Scaffold_279:581248..583166- (Ectocarpus subulatus male Bft15b)
ATGTTGAGCAAGTGGAATGCCGAGAACATCAACCAAGTCGGACCGTCTCA
GCGTGGGCTCGGCGGAGGCAAGAGCTTCAAGCCTCTAGGCGATGCAGGAT
CGTCAGAGAACCCTCCCTCAGCTTCCGGGAAGGGCATTCTTCAGCGCAAG
CTCAAACCCCTGGGCAGCTACTCCGAAAACGCACCGCCTTCGGCCGCGAA
AGGAAAAGCGGCCGGCGGTGGAGGGGGGCTCGGAGGCCTTCCCCCGAACT
CTTCCGCCAAGAAACAGCCGCGACGGGCGCTAGGCGACATCTCAAACGCG
GGCAACGCCCCTCCGCCAGTGGCGACCAACAACGCCCCGTCCAAGCTCTC
GGGGAAGCAGCCGCTCCTCGCCCCTGGGTTGAAATTTACCGTACACAGCG
ATTCGAACAAGGCGGCGGCGGGGAGGGCGGTAAGGCCGCGAGGCGCAGGA
TCAAGGGTCGTAGCGAGCGGGAGCGGAAGGAGCGTGCTAGGGTCGAATGG
GCGCGTGGATGACATCGAGCTCCCTCTCGGTAGGACCGGAGACGAGGAGG
AGGTGCTCGTGGAGAGACGCGCGGAGGAGAGAGCGGCTGAGAAGTTCGCC
AGGCCTCACAGGGTACCGTAG
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