EsuBft92_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft92_5a-0001
Unique Name	EsuBft92_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_621	contig	Scaffold_621:67666..71121 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft92_5
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	290
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft92_5a	EsuBft92_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_621 67666..71121 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_5a-0001-exon	agat-exon-39897	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 67666..68574 +
EsuBft92_5a-0001-exon	EsuBft92_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 69123..71121 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_5a-0001-exon	agat-five_prime_utr-15071	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_621 67666..68046 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_5a-0001-cds	EsuBft92_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_621 68047..68574 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_5a-0001-exon	agat-three_prime_utr-23176	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_621 69825..71121 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_5a-0001	EsuBft92_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_621 68047..69824 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_621:67666..71121+
coding sequence from alignment at Scaffold_621:67666..71121+

spliced messenger RNA

>EsuBft92_5a-0001 ID=EsuBft92_5a-0001|Name=EsuBft92_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2908bp|location=Sequence derived from alignment at Scaffold_621:67666..71121+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCTCACTTGGAGGGCACAGCGGTGGAACCCCGGCAAGTACATCACCACC
TGTTCCGTCGGCTGCGCCGTCGGCAGCGCCATCGGCTGCGACGATCAGGC
CGACGGCTTCCACCACGCCTGGCGCAGCCCCGCCTCAAGGGCCCAGTAGT
GGGAACGAGCAACGTGCATCCCCAACTCGTGATACAACAGCGACCGCGGG
AAAGGAGGTTCGTACAGAGCCACCTTTGTTCGACTGCTGGCCCCTCCCTA
GTTTGAGGCAGGAGGCCACGCGGGAGGCTGGCCGGAGGAATGCGTTGAAG
TTTGGTCCACTGCCTGAACAAGAGCTTCGACAAATTTCGAATGCAAGCAA
ACAGGAGTTGATCGACGCACTGACGGGTCGCATGAAGTGGCGCGCAAGTC
TTGGTGTAGAGCCTGAGTGGAAAGGCATCCGCTGCGGCGTTACGCCGGAG
AAGAAGAAGCAGCTGCGGCGTAGTCGACAAACTGGTCAGCCGACACCTAA
CTCGTCCCAGGCACTATGCTGTCGGCTGGTGTGCCTAACTTTGCACCCGG
AGTTCAAGGACGACTACATGTGCTTCAGGGGGGGTGGGGAGGGCACAGCG
CGCACCGAACTGGACGTACGGGCGACGGGCGCGAAGCACAGGTTTTTCGC
CCGGGTTGCCAGGGCGATGGCGACTCCCACCTGGCGCGACGGCAACGGTA
ACCCCCTCTCAGTACCCAACGATCACTCCAAAGACGAGCTCGCATCGGAG
CATCTGAAGTCTCTCCTCAAGCGGCTGGACCTAGAGGGGGCGGCTAAGTC
GCTGCAGGAGGAACTCAGGGGGAAATTCAAAGGCGATGAGGGCGCCTTTT
ATGCTGATCTCCAACTGAGATGTTTCAATTGGCTGAAAGAAGTACGGGGC
AAGCACACGAAATTCAAGGAGAACGAGCAAAGAAGTGGTGGGGCCGGTGC
GGACGCAACTCAGGACGGGGGATTCGTCAACGCCCGTCATCCGTTCCAGT
TTATGCGGGGCTCTTTACCGACAATGCTCTGGGAGGACGGTATCGAGCTC
TCCGGCGGAGGCGACGACGAGACATACCGCCCCGGCGATATCGTCCTCCC
CGATGGACACCCAGGCTCAGGCAGCAGCGTGCCGGGTGGACCCGGGGTCC
GAGGGAGAGGTGAGGCGACACCCGCCCGTTCCTCTGGCAACACCAACTCT
CGGAAGCACAAGAAACCCAAGACGGGTTCCGATGACAGGGCGGAGCTGGT
AGCCGACACGAAGGAAGTGATCGCCTTGTGGCGCAAAGCAGCGGAGCAGG
AAGTACGGGGAGACAAACCTGCTTTCGGTGATATAGAGAAGGACCGAGCG
AAGGACCTTGCCATGGAGGGATTCATCGACGATGTTCAGAGGCTCCAAGC
AAAGGTCGATTCTGCATCATCGGACTTTTTGCGGGAGAAATATCAGAAAT
TGTTGGATGCCGCTGAAGCGCGAGTGGCACGGGCTGAGCAGAGCAGCGAC
GAGGCGGCTATGGCATCATCGAGCGCCGCGGCCGCGCCCCCACCGTTATC
GAGTCCTGCTGCGCCATCTACGCCTGCAGCGGTCGAAGGAGGAACGGTCC
ATGTGATGTAGGATCTCCATGGGCTTCCGGGGCGCACGCCCGTGGATGAT
TTGCCGGCGATGGCACGGGCCTTGGCGCGTACAGGCGACGGGGGTGGGGC
TTGAGTACTGGTTGCGCGGGCGAGAGGCGGGGATGGATGGTGGGGGGATA
CAGTCTTTGGTGGGAGCACCCTGGCTGGAAACCTGCGGGCGACTGCGCGG
GTGTTGCCGTAACAGTCCACACGGGGGCGCAGGGGCAGTGGGGCGTGTGT
GTTTCGGAGTGAGCGGCAACAGCAGGACGAGAACAGAATGTAAGCGCACA
TGTTGAATGCTCCCCGAGCCGTGAGGGATGCTGTGTTTTTGAAGTTTCAA
ACGTGGGGGGAGTCTTTGATCTGTGTTCTACGCAAAGGCGTTTGCCGGCA
TGGGGGTTGCGCGGGGCTGAACCGTTCAGTAAACGCAACACCACGCGCCA
ACACCAGTTATTTTTCATTATCTACTCATTTTCTATTTGTGGAGAGGGAT
GCACCAGAGCAAGAAATCTTGGGGGGGCAATACCTGCCCGGACATGGCGA
AGAGTCACTTCGCTTGGAAGTTGCTCCGTAGCTACTTGATACAGTAGGTT
GTTCCCACTTAAATAGTTGCTTCCCGGGGGAATCAAGGACTTGGCTTTCC
CAACCGATTTTTTTTTTTGCTGATTCTGGGGTGGGTGGAAACTACTGCTG
TACGTGGGCACGAAAAAAGAGGCCTTTTTGTGACTGCTGTTGACCTCGCC
AAGTGTTGAACAACCCACATGGCTCGTCGGACAACCACATATGATTTTGT
TCAGATTGATTTCATAAGGTCCGCGTACTCCTGTCAACCATGGCATTGGG
AGGTGATGCATGTTTTTTTTATGAGTGTGAGGTGCAACGATTCTTCACGC
GGCAAGCGACGAGACTCCTTCCCCCTTTTGGCGAAGATATCGCACACGTG
ATGAAATATTCGGAGTGTTTCCGGAAATATTGTAACTCCCTCCGACTCCT
TCAGATTTGGCTAAACAGCAGCAAGAAGTGGAGCTACAGTATTATGACAG
GGCATTGCGATGCTTTCACGCACGTCGGGTTTTCCCTCGAAGGAGGACAT
TTGTTTAGTTGTTCTCATGTTTGGTTCAAGGTTCTGCGGATCCTCTTATC
ATTTCCAGACGTTTAACATTGTGACATGTTTTGGAATGACGGATGCGTCA
AAATGACAGCAGTTCCGTCCTAGAGGATCATATTATCACCGAGACCTTGC
TTGTGCTCTGCTGGGTGGAAAGGTCCTGTGAGAGGCTACTCTTCTTAGCG
TGTGTGTG

protein sequence of EsuBft92_5a-0001

>EsuBft92_5 ID=EsuBft92_5|Name=EsuBft92_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=409bp
MKWRASLGVEPEWKGIRCGVTPEKKKQLRRSRQTGQPTPNSSQALCCRLV
CLTLHPEFKDDYMCFRGGGEGTARTELDVRATGAKHRFFARVARAMATPT
WRDGNGNPLSVPNDHSKDELASEHLKSLLKRLDLEGAAKSLQEELRGKFK
GDEGAFYADLQLRCFNWLKEVRGKHTKFKENEQRSGGAGADATQDGGFVN
ARHPFQFMRGSLPTMLWEDGIELSGGGDDETYRPGDIVLPDGHPGSGSSV
PGGPGVRGRGEATPARSSGNTNSRKHKKPKTGSDDRAELVADTKEVIALW
RKAAEQEVRGDKPAFGDIEKDRAKDLAMEGFIDDVQRLQAKVDSASSDFL
REKYQKLLDAAEARVARAEQSSDEAAMASSSAAAAPPPLSSPAAPSTPAA
VEGGTVHVM

mRNA from alignment at Scaffold_621:67666..71121+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft92_5a-0001 ID=EsuBft92_5a-0001|Name=EsuBft92_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3456bp|location=Sequence derived from alignment at Scaffold_621:67666..71121+ (Ectocarpus subulatus male Bft15b)
TCCTCACTTGGAGGGCACAGCGGTGGAACCCCGGCAAGTACATCACCACC
TGTTCCGTCGGCTGCGCCGTCGGCAGCGCCATCGGCTGCGACGATCAGGC
CGACGGCTTCCACCACGCCTGGCGCAGCCCCGCCTCAAGGGCCCAGTAGT
GGGAACGAGCAACGTGCATCCCCAACTCGTGATACAACAGCGACCGCGGG
AAAGGAGGTTCGTACAGAGCCACCTTTGTTCGACTGCTGGCCCCTCCCTA
GTTTGAGGCAGGAGGCCACGCGGGAGGCTGGCCGGAGGAATGCGTTGAAG
TTTGGTCCACTGCCTGAACAAGAGCTTCGACAAATTTCGAATGCAAGCAA
ACAGGAGTTGATCGACGCACTGACGGGTCGCATGAAGTGGCGCGCAAGTC
TTGGTGTAGAGCCTGAGTGGAAAGGCATCCGCTGCGGCGTTACGCCGGAG
AAGAAGAAGCAGCTGCGGCGTAGTCGACAAACTGGTCAGCCGACACCTAA
CTCGTCCCAGGCACTATGCTGTCGGCTGGTGTGCCTAACTTTGCACCCGG
AGTTCAAGGACGACTACATGTGCTTCAGGGGGGGTGGGGAGGGCACAGCG
CGCACCGAACTGGACGTACGGGCGACGGGCGCGAAGCACAGGTTTTTCGC
CCGGGTTGCCAGGGCGATGGCGACTCCCACCTGGCGCGACGGCAACGGTA
ACCCCCTCTCAGTACCCAACGATCACTCCAAAGACGAGCTCGCATCGGAG
CATCTGAAGTCTCTCCTCAAGCGGCTGGACCTAGAGGGGGCGGCTAAGTC
GCTGCAGGAGGAACTCAGGGGGAAATTCAAAGGCGATGAGGGCGCCTTTT
ATGCTGATCTCCAACTGAGATGTTTCAATTGGCTGAAAGAAGTACGGGGC
AAGCACACGGTGAGTGTAGCGGTGTTCTCGTGTTCATTCTGCAGGTGGCA
GCGTCGTCCTGCCGTGGCTACACAGGATGCAGGAACAGGATGCAGGACGT
CTTCGTATTTTGTCGGTCTGCAGTGCTCGTCTTGGGATATCTGTGCGTGC
ATCAGCAGTCAAGCTAGAAATTTGGCGAGGTGTGAGGTCGATGTAACCAT
CACTGTAGACGGGTTGCCTTTATATTCCAGTGATGAGCATCCTTCGTTTT
GTGTGTGTATTTCTTCTTGTGTTGGGTTTAAGCTGTGGGCCCTCGCGACC
TCAACCTACAGTATCATCGTGGGGTGCGCTTCTCCCCCAAGTTTTTTTGG
GTGAAACAAGTTTTTTTCCCGTCCTGCCTTGCGCCATTGTGTGTATGTCG
TTCCCTTTTTCCGTTGACGCCCCAACACAAGTACCACGTGGAATGCAGAA
AAGATTGTTAGCGACATCAGATTTCACCACTCAAGACTCAAGGCTTTGTT
CCCATCCCATTTCCGACGAACGTGGACCGTTTCTTCGCTCTCTCCTTGGC
ACATCAGAAATTCAAGGAGAACGAGCAAAGAAGTGGTGGGGCCGGTGCGG
ACGCAACTCAGGACGGGGGATTCGTCAACGCCCGTCATCCGTTCCAGTTT
ATGCGGGGCTCTTTACCGACAATGCTCTGGGAGGACGGTATCGAGCTCTC
CGGCGGAGGCGACGACGAGACATACCGCCCCGGCGATATCGTCCTCCCCG
ATGGACACCCAGGCTCAGGCAGCAGCGTGCCGGGTGGACCCGGGGTCCGA
GGGAGAGGTGAGGCGACACCCGCCCGTTCCTCTGGCAACACCAACTCTCG
GAAGCACAAGAAACCCAAGACGGGTTCCGATGACAGGGCGGAGCTGGTAG
CCGACACGAAGGAAGTGATCGCCTTGTGGCGCAAAGCAGCGGAGCAGGAA
GTACGGGGAGACAAACCTGCTTTCGGTGATATAGAGAAGGACCGAGCGAA
GGACCTTGCCATGGAGGGATTCATCGACGATGTTCAGAGGCTCCAAGCAA
AGGTCGATTCTGCATCATCGGACTTTTTGCGGGAGAAATATCAGAAATTG
TTGGATGCCGCTGAAGCGCGAGTGGCACGGGCTGAGCAGAGCAGCGACGA
GGCGGCTATGGCATCATCGAGCGCCGCGGCCGCGCCCCCACCGTTATCGA
GTCCTGCTGCGCCATCTACGCCTGCAGCGGTCGAAGGAGGAACGGTCCAT
GTGATGTAGGATCTCCATGGGCTTCCGGGGCGCACGCCCGTGGATGATTT
GCCGGCGATGGCACGGGCCTTGGCGCGTACAGGCGACGGGGGTGGGGCTT
GAGTACTGGTTGCGCGGGCGAGAGGCGGGGATGGATGGTGGGGGGATACA
GTCTTTGGTGGGAGCACCCTGGCTGGAAACCTGCGGGCGACTGCGCGGGT
GTTGCCGTAACAGTCCACACGGGGGCGCAGGGGCAGTGGGGCGTGTGTGT
TTCGGAGTGAGCGGCAACAGCAGGACGAGAACAGAATGTAAGCGCACATG
TTGAATGCTCCCCGAGCCGTGAGGGATGCTGTGTTTTTGAAGTTTCAAAC
GTGGGGGGAGTCTTTGATCTGTGTTCTACGCAAAGGCGTTTGCCGGCATG
GGGGTTGCGCGGGGCTGAACCGTTCAGTAAACGCAACACCACGCGCCAAC
ACCAGTTATTTTTCATTATCTACTCATTTTCTATTTGTGGAGAGGGATGC
ACCAGAGCAAGAAATCTTGGGGGGGCAATACCTGCCCGGACATGGCGAAG
AGTCACTTCGCTTGGAAGTTGCTCCGTAGCTACTTGATACAGTAGGTTGT
TCCCACTTAAATAGTTGCTTCCCGGGGGAATCAAGGACTTGGCTTTCCCA
ACCGATTTTTTTTTTTGCTGATTCTGGGGTGGGTGGAAACTACTGCTGTA
CGTGGGCACGAAAAAAGAGGCCTTTTTGTGACTGCTGTTGACCTCGCCAA
GTGTTGAACAACCCACATGGCTCGTCGGACAACCACATATGATTTTGTTC
AGATTGATTTCATAAGGTCCGCGTACTCCTGTCAACCATGGCATTGGGAG
GTGATGCATGTTTTTTTTATGAGTGTGAGGTGCAACGATTCTTCACGCGG
CAAGCGACGAGACTCCTTCCCCCTTTTGGCGAAGATATCGCACACGTGAT
GAAATATTCGGAGTGTTTCCGGAAATATTGTAACTCCCTCCGACTCCTTC
AGATTTGGCTAAACAGCAGCAAGAAGTGGAGCTACAGTATTATGACAGGG
CATTGCGATGCTTTCACGCACGTCGGGTTTTCCCTCGAAGGAGGACATTT
GTTTAGTTGTTCTCATGTTTGGTTCAAGGTTCTGCGGATCCTCTTATCAT
TTCCAGACGTTTAACATTGTGACATGTTTTGGAATGACGGATGCGTCAAA
ATGACAGCAGTTCCGTCCTAGAGGATCATATTATCACCGAGACCTTGCTT
GTGCTCTGCTGGGTGGAAAGGTCCTGTGAGAGGCTACTCTTCTTAGCGTG
TGTGTG

Coding sequence (CDS) from alignment at Scaffold_621:67666..71121+

>EsuBft92_5a-0001 ID=EsuBft92_5a-0001|Name=EsuBft92_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1230bp|location=Sequence derived from alignment at Scaffold_621:67666..71121+ (Ectocarpus subulatus male Bft15b)
ATGAAGTGGCGCGCAAGTCTTGGTGTAGAGCCTGAGTGGAAAGGCATCCG
CTGCGGCGTTACGCCGGAGAAGAAGAAGCAGCTGCGGCGTAGTCGACAAA
CTGGTCAGCCGACACCTAACTCGTCCCAGGCACTATGCTGTCGGCTGGTG
TGCCTAACTTTGCACCCGGAGTTCAAGGACGACTACATGTGCTTCAGGGG
GGGTGGGGAGGGCACAGCGCGCACCGAACTGGACGTACGGGCGACGGGCG
CGAAGCACAGGTTTTTCGCCCGGGTTGCCAGGGCGATGGCGACTCCCACC
TGGCGCGACGGCAACGGTAACCCCCTCTCAGTACCCAACGATCACTCCAA
AGACGAGCTCGCATCGGAGCATCTGAAGTCTCTCCTCAAGCGGCTGGACC
TAGAGGGGGCGGCTAAGTCGCTGCAGGAGGAACTCAGGGGGAAATTCAAA
GGCGATGAGGGCGCCTTTTATGCTGATCTCCAACTGAGATGTTTCAATTG
GCTGAAAGAAGTACGGGGCAAGCACACGAAATTCAAGGAGAACGAGCAAA
GAAGTGGTGGGGCCGGTGCGGACGCAACTCAGGACGGGGGATTCGTCAAC
GCCCGTCATCCGTTCCAGTTTATGCGGGGCTCTTTACCGACAATGCTCTG
GGAGGACGGTATCGAGCTCTCCGGCGGAGGCGACGACGAGACATACCGCC
CCGGCGATATCGTCCTCCCCGATGGACACCCAGGCTCAGGCAGCAGCGTG
CCGGGTGGACCCGGGGTCCGAGGGAGAGGTGAGGCGACACCCGCCCGTTC
CTCTGGCAACACCAACTCTCGGAAGCACAAGAAACCCAAGACGGGTTCCG
ATGACAGGGCGGAGCTGGTAGCCGACACGAAGGAAGTGATCGCCTTGTGG
CGCAAAGCAGCGGAGCAGGAAGTACGGGGAGACAAACCTGCTTTCGGTGA
TATAGAGAAGGACCGAGCGAAGGACCTTGCCATGGAGGGATTCATCGACG
ATGTTCAGAGGCTCCAAGCAAAGGTCGATTCTGCATCATCGGACTTTTTG
CGGGAGAAATATCAGAAATTGTTGGATGCCGCTGAAGCGCGAGTGGCACG
GGCTGAGCAGAGCAGCGACGAGGCGGCTATGGCATCATCGAGCGCCGCGG
CCGCGCCCCCACCGTTATCGAGTCCTGCTGCGCCATCTACGCCTGCAGCG
GTCGAAGGAGGAACGGTCCATGTGATGTAG