EsuBft92_31a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft92_31a-0001
Unique Name	EsuBft92_31a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_621	contig	Scaffold_621:288699..290090 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G254
ProteomeId	EsuBft92_31
Protein domains	PF13637
Protein domains	PTHR24198
Protein domains	IPR002110
Protein domains	IPR020683
Owner	apollo_admin@sb-roscoff.fr
Note	ankyrin-1 os:mus musculus gn:ank1 pe:1 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1392
Hectar predicted targeting category	other localisation
Evalue	1.22e-221
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Ec32 ortholog description	Ankyrin repeat
Ec32 ortholog	Ec-01_009280.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	spectrin binding
COG category	I

Cross References

External references for this mRNA


Database	Accession
GO	0031227
GO	0072659
GO	0051649
GO	0043231
GO	0050794
GO	0044707
GO	0051050
GO	0016020
GO	0043232
GO	0008152
GO	0043269
GO	0065008
GO	0044304
GO	0044459

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft92_31a	EsuBft92_31a	Ectocarpus subulatus male Bft15b	gene	Scaffold_621 288699..290090 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_31a-0001-exon	EsuBft92_31a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 288699..290090 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_31a-0001-cds	EsuBft92_31a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_621 288699..290090 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft92_31a-0001	EsuBft92_31	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_621 288699..290090 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_621:288699..290090+
coding sequence from alignment at Scaffold_621:288699..290090+

spliced messenger RNA

>EsuBft92_31a-0001 ID=EsuBft92_31a-0001|Name=EsuBft92_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1392bp|location=Sequence derived from alignment at Scaffold_621:288699..290090+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCCATGGACAACGAGAGGTTGATGAAGCGCATCCTGCTTGTCGG
TCCGAGGCCGTCGCGGGAGGTAGCCCGTTTGTATGCCGCGAAGTGCACGG
AATCAAGCGACAGCGAGAGACTGCTCGAGATCCTGGCCAAGAGAGGGTGG
ACCCCCGCCCCGTCGGACTCGAACGGCGGCGACGGTGACTCAAACGGCGG
CGGCAACCACCGCGAGGGCGGCGTCCGCGATCGCGATAGCAACGAGGACG
ACTGCACCGCCGCCTTCGCGTCCTTCTTCGACGGCCGCGACGACAACCGA
GGAGGGCAGTGCGAAGACTTGCCCCTCCACGAGGCAATCATCACTGAAGA
CGTCCGGTTCGTGGTGGAGCTCCTGGAGGTGGTGGAAGACCCCAACGCGC
TGGACAGATCTGGGTGGACTCCGCTCCACGTGGCGACCCGCTTTGACGTC
GCCATGGTGGAGGCGCTCATTGACGCCGGGGCTAACGTGGGCCTCAGGCG
CCCCCGGTGCGGCTCGACGGCTCTCCACATGTCGGCGATGAACGGTCGCG
TCGAAGTCACCGAGGCTTTGCTAGCAACTGCTGTATCGAGCAACGGCGAT
AACAGTGCTTGCGGCTCTGCTACTGCTGCTCGAGTGGCGCCATACAGCAG
CGTGACAGGCGGCGGCGCGGCCTCAGCACCAAACGCAACCACCGCCGACG
GGAAGTTCGGCCGCCGGTCGTCAATGGTGGACGCGAAGGACTGCGGAGGG
AAGTGCCCGCTCCATTTCGCCGCCATCAACGGCGCCAGCACCGGAGTCGT
GGAAGCCCTAATACGGGCCGGCGCCGACGTGAACAGCCGAGACGAGGCCG
ACCGCACCCCGCTGATCTACGCGGCGACGGCGAGTACCACCGGCGCCGTC
AAAACGGGAGTCGTCAAGGCCCTGCTCGAGGCCGGCGCCTCGCCCGACCT
GAAGGACTCGAACGGGGAAGCTGCCCTCCACAAGGCCGTACTGATGCCGG
CCGGGGGTGTCCTGGCGGCTCTCCTCGACGGGGGAGCTTCGCCCGGATCG
GGCGGGGAGAAGGGCTGGACGCCGCTCCACGTGGCGTGCGAGTACAACAT
GTGCGGCACGGTGGCGGCTTTGCTCAGCGCCGGTGCTGTGCCCGGCCACT
GCTGGAACGAATATCTGCGACCCCCGCTGACGGTGGCGTGCATGTCCGGG
AGGCTGGGCGCCGTGGAGCTGCTGCTGCCGAGGCTGTCGCCGAGGCAGAT
CAACATGCGTGACCGAGTGAGCGGCGTGGACGACGGCGGAGTGACACCCC
TGGTGGCCGCCGTGTGGTACGCCTGCGAGGAAGAAGAGGAGGACGAAGCC
CTTAGGATTGTCGAGGCGGTGAGACTTTTCTGGCAGCAATAG

protein sequence of EsuBft92_31a-0001

>EsuBft92_31 ID=EsuBft92_31|Name=EsuBft92_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=463bp
MLAMDNERLMKRILLVGPRPSREVARLYAAKCTESSDSERLLEILAKRGW
TPAPSDSNGGDGDSNGGGNHREGGVRDRDSNEDDCTAAFASFFDGRDDNR
GGQCEDLPLHEAIITEDVRFVVELLEVVEDPNALDRSGWTPLHVATRFDV
AMVEALIDAGANVGLRRPRCGSTALHMSAMNGRVEVTEALLATAVSSNGD
NSACGSATAARVAPYSSVTGGGAASAPNATTADGKFGRRSSMVDAKDCGG
KCPLHFAAINGASTGVVEALIRAGADVNSRDEADRTPLIYAATASTTGAV
KTGVVKALLEAGASPDLKDSNGEAALHKAVLMPAGGVLAALLDGGASPGS
GGEKGWTPLHVACEYNMCGTVAALLSAGAVPGHCWNEYLRPPLTVACMSG
RLGAVELLLPRLSPRQINMRDRVSGVDDGGVTPLVAAVWYACEEEEEDEA
LRIVEAVRLFWQQ

mRNA from alignment at Scaffold_621:288699..290090+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft92_31a-0001 ID=EsuBft92_31a-0001|Name=EsuBft92_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1392bp|location=Sequence derived from alignment at Scaffold_621:288699..290090+ (Ectocarpus subulatus male Bft15b)
ATGCTGGCCATGGACAACGAGAGGTTGATGAAGCGCATCCTGCTTGTCGG
TCCGAGGCCGTCGCGGGAGGTAGCCCGTTTGTATGCCGCGAAGTGCACGG
AATCAAGCGACAGCGAGAGACTGCTCGAGATCCTGGCCAAGAGAGGGTGG
ACCCCCGCCCCGTCGGACTCGAACGGCGGCGACGGTGACTCAAACGGCGG
CGGCAACCACCGCGAGGGCGGCGTCCGCGATCGCGATAGCAACGAGGACG
ACTGCACCGCCGCCTTCGCGTCCTTCTTCGACGGCCGCGACGACAACCGA
GGAGGGCAGTGCGAAGACTTGCCCCTCCACGAGGCAATCATCACTGAAGA
CGTCCGGTTCGTGGTGGAGCTCCTGGAGGTGGTGGAAGACCCCAACGCGC
TGGACAGATCTGGGTGGACTCCGCTCCACGTGGCGACCCGCTTTGACGTC
GCCATGGTGGAGGCGCTCATTGACGCCGGGGCTAACGTGGGCCTCAGGCG
CCCCCGGTGCGGCTCGACGGCTCTCCACATGTCGGCGATGAACGGTCGCG
TCGAAGTCACCGAGGCTTTGCTAGCAACTGCTGTATCGAGCAACGGCGAT
AACAGTGCTTGCGGCTCTGCTACTGCTGCTCGAGTGGCGCCATACAGCAG
CGTGACAGGCGGCGGCGCGGCCTCAGCACCAAACGCAACCACCGCCGACG
GGAAGTTCGGCCGCCGGTCGTCAATGGTGGACGCGAAGGACTGCGGAGGG
AAGTGCCCGCTCCATTTCGCCGCCATCAACGGCGCCAGCACCGGAGTCGT
GGAAGCCCTAATACGGGCCGGCGCCGACGTGAACAGCCGAGACGAGGCCG
ACCGCACCCCGCTGATCTACGCGGCGACGGCGAGTACCACCGGCGCCGTC
AAAACGGGAGTCGTCAAGGCCCTGCTCGAGGCCGGCGCCTCGCCCGACCT
GAAGGACTCGAACGGGGAAGCTGCCCTCCACAAGGCCGTACTGATGCCGG
CCGGGGGTGTCCTGGCGGCTCTCCTCGACGGGGGAGCTTCGCCCGGATCG
GGCGGGGAGAAGGGCTGGACGCCGCTCCACGTGGCGTGCGAGTACAACAT
GTGCGGCACGGTGGCGGCTTTGCTCAGCGCCGGTGCTGTGCCCGGCCACT
GCTGGAACGAATATCTGCGACCCCCGCTGACGGTGGCGTGCATGTCCGGG
AGGCTGGGCGCCGTGGAGCTGCTGCTGCCGAGGCTGTCGCCGAGGCAGAT
CAACATGCGTGACCGAGTGAGCGGCGTGGACGACGGCGGAGTGACACCCC
TGGTGGCCGCCGTGTGGTACGCCTGCGAGGAAGAAGAGGAGGACGAAGCC
CTTAGGATTGTCGAGGCGGTGAGACTTTTCTGGCAGCAATAG

Coding sequence (CDS) from alignment at Scaffold_621:288699..290090+

>EsuBft92_31a-0001 ID=EsuBft92_31a-0001|Name=EsuBft92_31a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1392bp|location=Sequence derived from alignment at Scaffold_621:288699..290090+ (Ectocarpus subulatus male Bft15b)
ATGCTGGCCATGGACAACGAGAGGTTGATGAAGCGCATCCTGCTTGTCGG
TCCGAGGCCGTCGCGGGAGGTAGCCCGTTTGTATGCCGCGAAGTGCACGG
AATCAAGCGACAGCGAGAGACTGCTCGAGATCCTGGCCAAGAGAGGGTGG
ACCCCCGCCCCGTCGGACTCGAACGGCGGCGACGGTGACTCAAACGGCGG
CGGCAACCACCGCGAGGGCGGCGTCCGCGATCGCGATAGCAACGAGGACG
ACTGCACCGCCGCCTTCGCGTCCTTCTTCGACGGCCGCGACGACAACCGA
GGAGGGCAGTGCGAAGACTTGCCCCTCCACGAGGCAATCATCACTGAAGA
CGTCCGGTTCGTGGTGGAGCTCCTGGAGGTGGTGGAAGACCCCAACGCGC
TGGACAGATCTGGGTGGACTCCGCTCCACGTGGCGACCCGCTTTGACGTC
GCCATGGTGGAGGCGCTCATTGACGCCGGGGCTAACGTGGGCCTCAGGCG
CCCCCGGTGCGGCTCGACGGCTCTCCACATGTCGGCGATGAACGGTCGCG
TCGAAGTCACCGAGGCTTTGCTAGCAACTGCTGTATCGAGCAACGGCGAT
AACAGTGCTTGCGGCTCTGCTACTGCTGCTCGAGTGGCGCCATACAGCAG
CGTGACAGGCGGCGGCGCGGCCTCAGCACCAAACGCAACCACCGCCGACG
GGAAGTTCGGCCGCCGGTCGTCAATGGTGGACGCGAAGGACTGCGGAGGG
AAGTGCCCGCTCCATTTCGCCGCCATCAACGGCGCCAGCACCGGAGTCGT
GGAAGCCCTAATACGGGCCGGCGCCGACGTGAACAGCCGAGACGAGGCCG
ACCGCACCCCGCTGATCTACGCGGCGACGGCGAGTACCACCGGCGCCGTC
AAAACGGGAGTCGTCAAGGCCCTGCTCGAGGCCGGCGCCTCGCCCGACCT
GAAGGACTCGAACGGGGAAGCTGCCCTCCACAAGGCCGTACTGATGCCGG
CCGGGGGTGTCCTGGCGGCTCTCCTCGACGGGGGAGCTTCGCCCGGATCG
GGCGGGGAGAAGGGCTGGACGCCGCTCCACGTGGCGTGCGAGTACAACAT
GTGCGGCACGGTGGCGGCTTTGCTCAGCGCCGGTGCTGTGCCCGGCCACT
GCTGGAACGAATATCTGCGACCCCCGCTGACGGTGGCGTGCATGTCCGGG
AGGCTGGGCGCCGTGGAGCTGCTGCTGCCGAGGCTGTCGCCGAGGCAGAT
CAACATGCGTGACCGAGTGAGCGGCGTGGACGACGGCGGAGTGACACCCC
TGGTGGCCGCCGTGTGGTACGCCTGCGAGGAAGAAGAGGAGGACGAAGCC
CTTAGGATTGTCGAGGCGGTGAGACTTTTCTGGCAGCAATAG