EsuBft92_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft92_10a-0001
Unique NameEsuBft92_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_621contigScaffold_621:100043..102850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQK7
ProteomeIdEsuBft92_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length186
Hectar predicted targeting categoryother localisation
Evalue1.01e-65
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Description5'-3' exodeoxyribonuclease activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft92_10aEsuBft92_10aEctocarpus subulatus male Bft15bgeneScaffold_621 100043..102850 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_10a-0001-exonagat-exon-39918Ectocarpus subulatus male Bft15bexonScaffold_621 100043..101052 -
EsuBft92_10a-0001-exonEsuBft92_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_621 101446..101995 -
EsuBft92_10a-0001-exonagat-exon-39917Ectocarpus subulatus male Bft15bexonScaffold_621 102548..102850 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_10a-0001-exonagat-three_prime_utr-23155Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_621 100043..100249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_10a-0001-cdsEsuBft92_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_621 100250..101052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft92_10a-0001EsuBft92_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_621 100250..102850 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft92_10a-0001 ID=EsuBft92_10a-0001|Name=EsuBft92_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1863bp|location=Sequence derived from alignment at Scaffold_621:100043..102850- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAAGCGGCGGCCACGGCGCTGGCGGCGTGGCGAGGGGGCTCCGT
GCCTGCGCCAGGCGGCGGTGGTGGTGCGGGGAAAATGAAGAAGCTGTCCG
CTCAGGGCAACAACCTCACCAAGTACTGGGGTGCGCCGCTGCCCTCCTCC
AAGAAGTCTGGCGCGAAGCGTTTCGGCGGTGGCGTGGCCACCGGCCGCGG
CGGGTTTGAGCTCTGCGGCGACGGCGGCGCGACGCCTGACCGCCCCCCGC
GAGTGGCAGCCTTCCGCGGTGGAGGGGTCGCCGCCTCCAGGACGCTGGAG
AAGGACCCGCTCTCGATGCCGCCGCCGCTCGAGGACAATCCATCGGGGGG
GCAGGGAAAGGAGGATGACCCGCCCGCTGCTTCGACGAGCAAGTTCTTTG
GTGGCAGTGGCGGTGGCGGCGGCGGCAGGCGGGGTGCGGCCGTGCAACCG
TCCGGCCTCCGGAGGCGATTTCGGCCACCTCTCGACGCGGGCAGGAGTTC
CGCCGGCGGCGGCGGCGGCGGCAGCGGGCGCTCTGCTCTTCGCGGAGGTC
GCGGCGACGTCGATAACGACGCCGGAGACACGGACCCATGTGGAGCAGCG
GACTACGCGTATCCTCGCCTCGATGTTCCGCGAGAGACAGCGGCGGTGGC
CGGGGCGGCTGGCTTGGGCTCAGGCACCGCCACGCGTGGCGGTGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGGCTGAAACGGAGACGGACG
CTCGGGCTCGGATCGGTGGCACCCAGCAGGATGATCCGCGGCTTGGAAGG
GGTGGGGGGCGGCGGGGCTGGGGGACCTGGTCGGCGTAGCAAGAGTCTTG
GAGGTGTACCTAGCGCCGCGAGGCACGACGAAGACGACAACGCTAATGGC
AACAACGGTGACAAAGCAGGCTGCGTCGGAGACGCTGACGTTGGTTGCGT
CAGCAACCTCTTCGAGAGGTTCGCTGCAAGACCGCAATATCATCATTCCC
TAAAGGCCACACCTATTGGCCGACAACCACCAGCAGCATGGAAAAAGCCT
GGTACTACGGACGACGGTGATGATAATGGGGCAGCAACCGTTGCGACAAA
TGAGCTCCGTGCCACTGCTTCCCCCGCTGCCGCTACGATCAGCGAGGCAG
ACGACGACCACCACCACCAACATACTAAACCCAAAATAACTGTGCACGCG
GGCGGGACGGCGGCGGGGGCCAAGGAGGATGGAGCGGCGAGCGATGATGC
CCCCTTGACGGGGGAGCACGCACAGAAAGACACTCCTAGCCATTCCACCC
CCCTTGCTGCTGCGCCAATATCGTCACCGCCTGCTCGTGGGAGGATGGCA
GATCGACCCCGGGTGGGGGCGGGCCATGATGATGGTGTTGGCGGCTTCGC
CAGCGTGGACGGAAAGGGCACTACCTGCTGCATCACGACCGCGATCAAAA
ACAAGAGCAGTTGCAGCGTTAGAAACCACCAAGACAAGCATGTTTGTCGC
CGCGGAAGTAGCAATGCGGGTATCAGCGAGCGAAGGAAGAGTAGTAGTGG
TAGCAGCAGCGCAGCAGGTCGAACGACGAAGGATTTGGCCGGCGGGAATA
GTGGGTTGAGCCCCGACATTTTTGCTCAGTTCATGTATTCACCACCATCG
CGGTGAGGAGGTGTGCTCCCCCTGGCGGCTACTAAATTACTTGTTTGTGC
TGCCGCTGCTTGACACAGCAGTGGAAAGCGTCCTTCCTCTCTATATTGGT
CGCCCAGCAGAGTTAAAAGTACAGCTAAATTTAATTTTGGGGAATCTCAT
TCTCAGGGAGGAGGTGGACCAGCAGTAGTCCGCATCTCGTACCTATCTAT
TGATGCATACCTG
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protein sequence of EsuBft92_10a-0001

>EsuBft92_10 ID=EsuBft92_10|Name=EsuBft92_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=551bp
MSEAAATALAAWRGGSVPAPGGGGGAGKMKKLSAQGNNLTKYWGAPLPSS
KKSGAKRFGGGVATGRGGFELCGDGGATPDRPPRVAAFRGGGVAASRTLE
KDPLSMPPPLEDNPSGGQGKEDDPPAASTSKFFGGSGGGGGGRRGAAVQP
SGLRRRFRPPLDAGRSSAGGGGGGSGRSALRGGRGDVDNDAGDTDPCGAA
DYAYPRLDVPRETAAVAGAAGLGSGTATRGGGGGGGGGGGGGGRLKRRRT
LGLGSVAPSRMIRGLEGVGGGGAGGPGRRSKSLGGVPSAARHDEDDNANG
NNGDKAGCVGDADVGCVSNLFERFAARPQYHHSLKATPIGRQPPAAWKKP
GTTDDGDDNGAATVATNELRATASPAAATISEADDDHHHQHTKPKITVHA
GGTAAGAKEDGAASDDAPLTGEHAQKDTPSHSTPLAAAPISSPPARGRMA
DRPRVGAGHDDGVGGFASVDGKGTTCCITTAIKNKSSCSVRNHQDKHVCR
RGSSNAGISERRKSSSGSSSAAGRTTKDLAGGNSGLSPDIFAQFMYSPPS
R
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mRNA from alignment at Scaffold_621:100043..102850-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft92_10a-0001 ID=EsuBft92_10a-0001|Name=EsuBft92_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2808bp|location=Sequence derived from alignment at Scaffold_621:100043..102850- (Ectocarpus subulatus male Bft15b)
ATGAGCGAAGCGGCGGCCACGGCGCTGGCGGCGTGGCGAGGGGGCTCCGT
GCCTGCGCCAGGCGGCGGTGGTGGTGCGGGGAAAATGAAGAAGCTGTCCG
CTCAGGGCAACAACCTCACCAAGTACTGGGGTGCGCCGCTGCCCTCCTCC
AAGAAGTCTGGCGCGAAGCGTTTCGGCGGTGGCGTGGCCACCGGCCGCGG
CGGGTTTGAGCTCTGCGGCGACGGCGGCGCGACGCCTGACCGCCCCCCGC
GAGTGGCAGCCTTCCGCGGTGGAGGGGTCGCCGCCTCCAGGACGCTGGAG
AAGGTGCCGGCAGAGCAAATGTTGGGCGTCGGTGGTTTCAGGGTGCCGTG
GTTATTTTTTTGCGGAGGCATTGTTGGTGGGATGCGAACGAGGAAGGCTG
GGAAAAGGTCACAAAGGATCGTGTCCTTGCAGTCTGTGACTGGACGCTCG
GTGCCCCCATGCACGACCGCTATCGTAGACCCTTGCAGCCTTGCTCATAG
TGAGTGTTTTTGAACTCAAACCCTCCTACGTCCGTCTCTGCGGATCCTAC
CCCCCCCCGCTCCCTCCGTTTGCAACACCCAGAAGCTTGATCCGGACAGG
GCCAGCCCGGCTCAGTCGCCGGCGTGCGTGTCCCCGGGCAGCTTCTACGC
CGGCGCCAGCCCGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGGCCCCGGCCTCCTCCGGCGAGGTCAACGGGTGCGAAGACAAGGAAA
ATCAGGACCCGCTCTCGATGCCGCCGCCGCTCGAGGACAATCCATCGGGG
GGGCAGGGAAAGGAGGATGACCCGCCCGCTGCTTCGACGAGCAAGTTCTT
TGGTGGCAGTGGCGGTGGCGGCGGCGGCAGGCGGGGTGCGGCCGTGCAAC
CGTCCGGCCTCCGGAGGCGATTTCGGCCACCTCTCGACGCGGGCAGGAGT
TCCGCCGGCGGCGGCGGCGGCGGCAGCGGGCGCTCTGCTCTTCGCGGAGG
TCGCGGCGACGTCGATAACGACGCCGGAGACACGGACCCATGTGGAGCAG
CGGACTACGCGTATCCTCGCCTCGATGTTCCGCGAGAGACAGCGGCGGTG
GCCGGGGCGGCTGGCTTGGGCTCAGGCACCGCCACGCGTGGCGGTGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGGCTGAAACGGAGACGGA
CGCTCGGGCTCGGATCGGTGGCACCCAGCAGGATGATCCGCGGCTTGGAA
GGGGTGGGGGGCGGCGGGGCTGGGGGACCTGGTCGGCGTAGCAAGAGTCT
TGGAGGTGGGAGACTATTTAGGAGCGAATTTTACGCTTTCCGCGCATGAC
AACGACATGTAATGTATTATTTTTGTTGAGTTTTCGTGCGCCGCAAGCGT
TTCCGGGTTCCGGGGTATCTGTGATTCTGAGTGACGCTTCTTCTGTGCCA
AAGCTGGGGAGGCAGTTGTTGTAGCTGTCAAAGTGAAGGAAAAACAGATC
AGCCTTCTCTTCGTTGTTTTGTGCGCTTCGACCGACTGGGTCATTTCAGC
AGCAGCCGGCTCTCTTGTCTCTTTCGTCCTTGTGAGGGTGGACCCCCCCT
CTCGTGTGCCAAGATGTACCCCGGCCAATCCCATCCACCGCGCCCCCATC
CCGTGCTCCGGAACCCTGCGTCAAATTCGTTCGTTCGGTGTGAGGAAGGT
GTACCTAGCGCCGCGAGGCACGACGAAGACGACAACGCTAATGGCAACAA
CGGTGACAAAGCAGGCTGCGTCGGAGACGCTGACGTTGGTTGCGTCAGCA
ACCTCTTCGAGAGGTTCGCTGCAAGACCGCAATATCATCATTCCCTAAAG
GCCACACCTATTGGCCGACAACCACCAGCAGCATGGAAAAAGCCTGGTAC
TACGGACGACGGTGATGATAATGGGGCAGCAACCGTTGCGACAAATGAGC
TCCGTGCCACTGCTTCCCCCGCTGCCGCTACGATCAGCGAGGCAGACGAC
GACCACCACCACCAACATACTAAACCCAAAATAACTGTGCACGCGGGCGG
GACGGCGGCGGGGGCCAAGGAGGATGGAGCGGCGAGCGATGATGCCCCCT
TGACGGGGGAGCACGCACAGAAAGACACTCCTAGCCATTCCACCCCCCTT
GCTGCTGCGCCAATATCGTCACCGCCTGCTCGTGGGAGGATGGCAGATCG
ACCCCGGGTGGGGGCGGGCCATGATGATGGTGTTGGCGGCTTCGCCAGCG
TGGACGGAAAGGGCACTACCTGCTGCATCACGACCGCGATCAAAAACAAG
AGCAGTTGCAGCGTTAGAAACCACCAAGACAAGCATGTTTGTCGCCGCGG
AAGTAGCAATGCGGGTATCAGCGAGCGAAGGAAGAGTAGTAGTGGTAGCA
GCAGCGCAGCAGGTCGAACGACGAAGGATTTGGCCGGCGGGAATAGTGGG
TTGAGCCCCGACATTTTTGCTCAGTTCATGTATTCACCACCATCGCGGTG
AGGAGGTGTGCTCCCCCTGGCGGCTACTAAATTACTTGTTTGTGCTGCCG
CTGCTTGACACAGCAGTGGAAAGCGTCCTTCCTCTCTATATTGGTCGCCC
AGCAGAGTTAAAAGTACAGCTAAATTTAATTTTGGGGAATCTCATTCTCA
GGGAGGAGGTGGACCAGCAGTAGTCCGCATCTCGTACCTATCTATTGATG
CATACCTG
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Coding sequence (CDS) from alignment at Scaffold_621:100043..102850-

>EsuBft92_10a-0001 ID=EsuBft92_10a-0001|Name=EsuBft92_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1656bp|location=Sequence derived from alignment at Scaffold_621:100043..102850- (Ectocarpus subulatus male Bft15b)
ATGAGCGAAGCGGCGGCCACGGCGCTGGCGGCGTGGCGAGGGGGCTCCGT
GCCTGCGCCAGGCGGCGGTGGTGGTGCGGGGAAAATGAAGAAGCTGTCCG
CTCAGGGCAACAACCTCACCAAGTACTGGGGTGCGCCGCTGCCCTCCTCC
AAGAAGTCTGGCGCGAAGCGTTTCGGCGGTGGCGTGGCCACCGGCCGCGG
CGGGTTTGAGCTCTGCGGCGACGGCGGCGCGACGCCTGACCGCCCCCCGC
GAGTGGCAGCCTTCCGCGGTGGAGGGGTCGCCGCCTCCAGGACGCTGGAG
AAGGACCCGCTCTCGATGCCGCCGCCGCTCGAGGACAATCCATCGGGGGG
GCAGGGAAAGGAGGATGACCCGCCCGCTGCTTCGACGAGCAAGTTCTTTG
GTGGCAGTGGCGGTGGCGGCGGCGGCAGGCGGGGTGCGGCCGTGCAACCG
TCCGGCCTCCGGAGGCGATTTCGGCCACCTCTCGACGCGGGCAGGAGTTC
CGCCGGCGGCGGCGGCGGCGGCAGCGGGCGCTCTGCTCTTCGCGGAGGTC
GCGGCGACGTCGATAACGACGCCGGAGACACGGACCCATGTGGAGCAGCG
GACTACGCGTATCCTCGCCTCGATGTTCCGCGAGAGACAGCGGCGGTGGC
CGGGGCGGCTGGCTTGGGCTCAGGCACCGCCACGCGTGGCGGTGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGGCTGAAACGGAGACGGACG
CTCGGGCTCGGATCGGTGGCACCCAGCAGGATGATCCGCGGCTTGGAAGG
GGTGGGGGGCGGCGGGGCTGGGGGACCTGGTCGGCGTAGCAAGAGTCTTG
GAGGTGTACCTAGCGCCGCGAGGCACGACGAAGACGACAACGCTAATGGC
AACAACGGTGACAAAGCAGGCTGCGTCGGAGACGCTGACGTTGGTTGCGT
CAGCAACCTCTTCGAGAGGTTCGCTGCAAGACCGCAATATCATCATTCCC
TAAAGGCCACACCTATTGGCCGACAACCACCAGCAGCATGGAAAAAGCCT
GGTACTACGGACGACGGTGATGATAATGGGGCAGCAACCGTTGCGACAAA
TGAGCTCCGTGCCACTGCTTCCCCCGCTGCCGCTACGATCAGCGAGGCAG
ACGACGACCACCACCACCAACATACTAAACCCAAAATAACTGTGCACGCG
GGCGGGACGGCGGCGGGGGCCAAGGAGGATGGAGCGGCGAGCGATGATGC
CCCCTTGACGGGGGAGCACGCACAGAAAGACACTCCTAGCCATTCCACCC
CCCTTGCTGCTGCGCCAATATCGTCACCGCCTGCTCGTGGGAGGATGGCA
GATCGACCCCGGGTGGGGGCGGGCCATGATGATGGTGTTGGCGGCTTCGC
CAGCGTGGACGGAAAGGGCACTACCTGCTGCATCACGACCGCGATCAAAA
ACAAGAGCAGTTGCAGCGTTAGAAACCACCAAGACAAGCATGTTTGTCGC
CGCGGAAGTAGCAATGCGGGTATCAGCGAGCGAAGGAAGAGTAGTAGTGG
TAGCAGCAGCGCAGCAGGTCGAACGACGAAGGATTTGGCCGGCGGGAATA
GTGGGTTGAGCCCCGACATTTTTGCTCAGTTCATGTATTCACCACCATCG
CGGTGA
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