EsuBft929_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft929_5a-0001
Unique NameEsuBft929_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_620contigScaffold_620:46952..47849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LIK7
ProteomeIdEsuBft929_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length58
Hectar predicted targeting categoryother localisation
Evalue5.5e-83
EggNOG OGsCOG0631@1|root,KOG0585@1|root,KOG0585@2759|Eukaryota,KOG0698@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EC2.7.11.17,3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft929_5aEsuBft929_5aEctocarpus subulatus male Bft15bgeneScaffold_620 46952..47849 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft929_5a-0001-exonEsuBft929_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_620 46952..46954 +
EsuBft929_5a-0001-exonagat-exon-100174Ectocarpus subulatus male Bft15bexonScaffold_620 47268..47849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft929_5a-0001-cdsEsuBft929_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_620 46952..46954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft929_5a-0001EsuBft929_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_620 46952..47849 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft929_5a-0001 ID=EsuBft929_5a-0001|Name=EsuBft929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=585bp|location=Sequence derived from alignment at Scaffold_620:46952..47849+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTTCGGTCCCGTCACCGGCCGCCCCCACCCACGCGCGCACGTT
GAACCACCTCGTGACGCCCACCGCGACCGGGAACATCACACAGTTCGGCT
GGCCCAGAGGCGTCCGGCGGAAGAGCTACAGCGGCGCCGGCGCCGGCGCC
GGCTGCAGCAGCTACGGCGACGGAAACGGCAGTAGGCCGAACGCAACCGC
CGCTGGAGGAACCCCAATGCGCGCGTCGGCGGGTGGAGGTAGCTTCGACG
AAGTCGAGTCAGGGAGCAACAGCTTTAATATGCATCGCGGCGGCGGCGGC
GGCGGGAGGCGATCGAGGTGGGGTGCTCCGGGCCCTTTCCTGGGCGGTTG
GACACGCACGGCGTCACCGGCTCCGCAACGCCAGCACCAGCGTCACGACA
GCCTGCCGTCTAACCTCCACATCGACGTCGACCACATCAACTACGGCGGT
GGATCACGGAGTAATCTCGGGTGTCGAAGGCCGAGCGGCGATGGGACGGA
GAGTGGGGAGTGGTCGGCACGCGCGGGAGGAGCGGAGGGGGGAACTTTGT
CCTCCTGCGAACTGCCGTCGGCTCCTGGCATGTGA
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protein sequence of EsuBft929_5a-0001

>EsuBft929_5 ID=EsuBft929_5|Name=EsuBft929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MASSVPSPAAPTHARTLNHLVTPTATGNITQFGWPRGVRRKSYSGAGAGA
GCSSYGDGNGSRPNATAAGGTPMRASAGGGSFDEVESGSNSFNMHRGGGG
GGRRSRWGAPGPFLGGWTRTASPAPQRQHQRHDSLPSNLHIDVDHINYGG
GSRSNLGCRRPSGDGTESGEWSARAGGAEGGTLSSCELPSAPGM
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mRNA from alignment at Scaffold_620:46952..47849+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft929_5a-0001 ID=EsuBft929_5a-0001|Name=EsuBft929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=898bp|location=Sequence derived from alignment at Scaffold_620:46952..47849+ (Ectocarpus subulatus male Bft15b)
ATGGTTATATATAGCTGTACGAAAAAATACACTGAAAAGTGTAGTACTTA
CCCTACATAACCTGAAAAGTATAGTACATGTCTCACCACGAAAAATGGGG
GACCGTCGCCAATAAATAGGACGAAAGCAACGACACCGCCACCCCTTTCC
GCCTCTCCCTCCCTCCCGCCCACCCTCCCGCCGCCCCCGCTCCTCCTAAT
TNNNNNNNNNATTTTGCTCGTCTTTGGCTCACGGTCGGGACGGCTGTGCC
TGGCACAGCCCGGGCCCGTTGTCGTCGTGCTCCCTCGCCTCCCGCGCGAA
CAGTCCGGGGTCCCAGGCCTCTTCGGTCCCGTCACCGGCCGCCCCCACCC
ACGCGCGCACGTTGAACCACCTCGTGACGCCCACCGCGACCGGGAACATC
ACACAGTTCGGCTGGCCCAGAGGCGTCCGGCGGAAGAGCTACAGCGGCGC
CGGCGCCGGCGCCGGCTGCAGCAGCTACGGCGACGGAAACGGCAGTAGGC
CGAACGCAACCGCCGCTGGAGGAACCCCAATGCGCGCGTCGGCGGGTGGA
GGTAGCTTCGACGAAGTCGAGTCAGGGAGCAACAGCTTTAATATGCATCG
CGGCGGCGGCGGCGGCGGGAGGCGATCGAGGTGGGGTGCTCCGGGCCCTT
TCCTGGGCGGTTGGACACGCACGGCGTCACCGGCTCCGCAACGCCAGCAC
CAGCGTCACGACAGCCTGCCGTCTAACCTCCACATCGACGTCGACCACAT
CAACTACGGCGGTGGATCACGGAGTAATCTCGGGTGTCGAAGGCCGAGCG
GCGATGGGACGGAGAGTGGGGAGTGGTCGGCACGCGCGGGAGGAGCGGAG
GGGGGAACTTTGTCCTCCTGCGAACTGCCGTCGGCTCCTGGCATGTGA
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Coding sequence (CDS) from alignment at Scaffold_620:46952..47849+

>EsuBft929_5a-0001 ID=EsuBft929_5a-0001|Name=EsuBft929_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_620:46952..47849+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTTCGGTCCCGTCACCGGCCGCCCCCACCCACGCGCGCACGTT
GAACCACCTCGTGACGCCCACCGCGACCGGGAACATCACACAGTTCGGCT
GGCCCAGAGGCGTCCGGCGGAAGAGCTACAGCGGCGCCGGCGCCGGCGCC
GGCTGCAGCAGCTACGGCGACGGAAACGGCAGTAGGCCGAACGCAACCGC
CGCTGGAGGAACCCCAATGCGCGCGTCGGCGGGTGGAGGTAGCTTCGACG
AAGTCGAGTCAGGGAGCAACAGCTTTAATATGCATCGCGGCGGCGGCGGC
GGCGGGAGGCGATCGAGGTGGGGTGCTCCGGGCCCTTTCCTGGGCGGTTG
GACACGCACGGCGTCACCGGCTCCGCAACGCCAGCACCAGCGTCACGACA
GCCTGCCGTCTAACCTCCACATCGACGTCGACCACATCAACTACGGCGGT
GGATCACGGAGTAATCTCGGGTGTCGAAGGCCGAGCGGCGATGGGACGGA
GAGTGGGGAGTGGTCGGCACGCGCGGGAGGAGCGGAGGGGGGAACTTTGT
CCTCCTGCGAACTGCCGTCGGCTCCTGGCATGTGA
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