EsuBft928_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft928_9a-0001
Unique NameEsuBft928_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_611contigScaffold_611:40047..40815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft928_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length76
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft928_9aEsuBft928_9aEctocarpus subulatus male Bft15bgeneScaffold_611 40047..40815 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_9a-0001-exonEsuBft928_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_611 40047..40815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_9a-0001-cdsEsuBft928_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_611 40047..40214 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_9a-0001-exonagat-three_prime_utr-23152Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_611 40215..40815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_9a-0001EsuBft928_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_611 40047..40214 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft928_9a-0001 ID=EsuBft928_9a-0001|Name=EsuBft928_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=769bp|location=Sequence derived from alignment at Scaffold_611:40047..40815+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCACAGCTATCATCCAAGCCATCGGGTGGCCTTACCCGACCTGTA
CATGCGGAAATATGCCCTCCAAAGGGGCATCGCAGGATTATTGGAAGGTG
TCCTGTACATATCCGCGTCGTTACATCGATGCCCACGCCCCGCCAAGATG
GGAAAGGGCCTGAGATGAAGTTGACCGGCTCCCAGCTTTCATTCAAGCCC
TTCCTTACATAGCCTCGACCGACATGTGGTTGCCGAGATACACCCTCGCA
AGGGGGCACGGCGACCCCAACAGGGGTTGTCCCAAATTCCAAATTTGGGA
CAACACCCCACATCGTCTCCCAAGCGTCTCGGCGGCAGCCGCAACAACTA
CCGAAGTCATTCCACGGCTCCCAGCTTTCATTCAAGCCATCACATCGCCT
CGACCGGCACGTGGTTGCCGAGATACACCCTCGCAAGGGGGCACGGCGAC
CCCAACAGGGGTTGTCCCAAAGTTGCAAATTTGGGACAACACCCCATATC
GTCTCCCAAACGTCTTGTCGGCAGCCGCAACAACTACCACAGTCACGCCA
CGGCTCCCAGCTTTCATTCAAGCCATCACATCACCTCAACCGGGATGTGG
ATGCCGACCCTATCGCGGCGCTCAACAATGGTACCGAAAATGTGGTGTCC
AAAATGCTCGGAAAATCCCTGGCGATCATCGCTCACACGACCCACGAAGA
AGGCGCTGAACAACCAGCACTGTCATCTTGTACTGGAGTCACGCACCCCT
CAACTAGGATAGAGGCAAT
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protein sequence of EsuBft928_9a-0001

>EsuBft928_9 ID=EsuBft928_9|Name=EsuBft928_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MIHSYHPSHRVALPDLYMRKYALQRGIAGLLEGVLYISASLHRCPRPAKM
GKGLR
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mRNA from alignment at Scaffold_611:40047..40815+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft928_9a-0001 ID=EsuBft928_9a-0001|Name=EsuBft928_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=769bp|location=Sequence derived from alignment at Scaffold_611:40047..40815+ (Ectocarpus subulatus male Bft15b)
ATGATCCACAGCTATCATCCAAGCCATCGGGTGGCCTTACCCGACCTGTA
CATGCGGAAATATGCCCTCCAAAGGGGCATCGCAGGATTATTGGAAGGTG
TCCTGTACATATCCGCGTCGTTACATCGATGCCCACGCCCCGCCAAGATG
GGAAAGGGCCTGAGATGAAGTTGACCGGCTCCCAGCTTTCATTCAAGCCC
TTCCTTACATAGCCTCGACCGACATGTGGTTGCCGAGATACACCCTCGCA
AGGGGGCACGGCGACCCCAACAGGGGTTGTCCCAAATTCCAAATTTGGGA
CAACACCCCACATCGTCTCCCAAGCGTCTCGGCGGCAGCCGCAACAACTA
CCGAAGTCATTCCACGGCTCCCAGCTTTCATTCAAGCCATCACATCGCCT
CGACCGGCACGTGGTTGCCGAGATACACCCTCGCAAGGGGGCACGGCGAC
CCCAACAGGGGTTGTCCCAAAGTTGCAAATTTGGGACAACACCCCATATC
GTCTCCCAAACGTCTTGTCGGCAGCCGCAACAACTACCACAGTCACGCCA
CGGCTCCCAGCTTTCATTCAAGCCATCACATCACCTCAACCGGGATGTGG
ATGCCGACCCTATCGCGGCGCTCAACAATGGTACCGAAAATGTGGTGTCC
AAAATGCTCGGAAAATCCCTGGCGATCATCGCTCACACGACCCACGAAGA
AGGCGCTGAACAACCAGCACTGTCATCTTGTACTGGAGTCACGCACCCCT
CAACTAGGATAGAGGCAAT
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Coding sequence (CDS) from alignment at Scaffold_611:40047..40815+

>EsuBft928_9a-0001 ID=EsuBft928_9a-0001|Name=EsuBft928_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_611:40047..40815+ (Ectocarpus subulatus male Bft15b)
ATGATCCACAGCTATCATCCAAGCCATCGGGTGGCCTTACCCGACCTGTA
CATGCGGAAATATGCCCTCCAAAGGGGCATCGCAGGATTATTGGAAGGTG
TCCTGTACATATCCGCGTCGTTACATCGATGCCCACGCCCCGCCAAGATG
GGAAAGGGCCTGAGATGA
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