EsuBft928_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft928_8a-0001
Unique NameEsuBft928_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_611contigScaffold_611:40925..43372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft928_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length116
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft928_8aEsuBft928_8aEctocarpus subulatus male Bft15bgeneScaffold_611 40925..43372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_8a-0001EsuBft928_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_611 40989..42976 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_8a-0001-exonagat-exon-45943Ectocarpus subulatus male Bft15bexonScaffold_611 40925..41198 +
EsuBft928_8a-0001-exonagat-exon-45944Ectocarpus subulatus male Bft15bexonScaffold_611 41800..42181 +
EsuBft928_8a-0001-exonagat-exon-45945Ectocarpus subulatus male Bft15bexonScaffold_611 42364..42749 +
EsuBft928_8a-0001-exonEsuBft928_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_611 42941..43000 +
EsuBft928_8a-0001-exonagat-exon-45946Ectocarpus subulatus male Bft15bexonScaffold_611 43315..43372 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_8a-0001-exonagat-five_prime_utr-15054Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_611 40925..40988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_8a-0001-cdsEsuBft928_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_611 40989..41198 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_8a-0001-exonagat-three_prime_utr-23150Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_611 42977..43000 +
EsuBft928_8a-0001-exonagat-three_prime_utr-23151Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_611 43315..43372 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft928_8a-0001 ID=EsuBft928_8a-0001|Name=EsuBft928_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1160bp|location=Sequence derived from alignment at Scaffold_611:40925..43372+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCGTGCCTCGTCGGCCTCGGTCCCAGACCGCGCTACGCCGACGAAGGT
GTACATCGATCGGAATGAATTCTCGGTCTAGCCTGGAGAAGCCGGGGAAC
CCTCAGCAGGCCGCGCTCGGTGACTTGAGGTCGCTGTTGGGTGCTGTCGT
GCGGAAACCTCGCGGGGACGCCCATGGCATCGCAGTTGACCATCCAGCTG
TGGCGGAGGCCAAACGTCGCGCCCTACAGAAAGGTGGCCCCTTCGACCAT
TTCCCTCTACCTTCACCGTCCCAGACGGACCGAGAGCTGTTGGAAAAAGG
AGCGGAACAGTGCCACTTCACCTCCGCCATTCTTCGCGGTATCAATCACG
AAGATGGGCGTGAGGCAGGCACTCCCTATCTTACGGATGGAGACGGCAAC
TGCTTGTTGAACGCCGTGGCCATGCTGCTCGTGAAGAAGCAACCACGTGG
GGTCAGGAACGCCGTGAAGACGATGGCAGCTCAGCTCCGGCTGGGGATTG
TCGTGGAAGGCTTGCGCAACATCGAGGTGTACCTCGATCGCAAGTATGAG
TTCTACGGCACGTGGTACAACTATGTGGATCAGTTGGTGTTCGACCTGAA
GAGGTGTGGCTGGGTGGTGGACGCAATGCCGGAGAACCGTTGGCGAATGG
CGTCGCTCACCAGCGTCCAGAACGTCAACGGTGGAGAGTGGCAGTGGACC
CTGTTCCAACCGCTGGTCGCACCGGACCCGGGACGTCAGACCGTTCATGT
TGTTATGACGTATGTTTCGAGCGCGGACTACAGACCCCAGTTCAGCGACG
CCCACGAGTACAAACGTCTCAACGGTGGCCGCATCAGGGAGTTGAACCAC
TTCGTGGCTCTGTCTCACGACAACACCGCGAAGTATCACGAAACTGCTGT
CACGAGGATGGCCGGTCTTGTGCGCTTGGCACAAGACGACTGCAAGGAGT
CGGAGGCGAGGCTCAAGGAAGCTGTAGGGGACTCGGGTGGTTCACCGTCG
GCTCCTCATACCTGCACGGAACTGGCGGACGCGCAGGGCAAGGCGCAAGA
GCAGCTCGGGCGGAGGCAGGCCGCTTAAAGATGTATAACGGGCACGTACT
TCACCCCGCTGGCTTCCGCGGCGGAGGTAACCGCGTTGGAGAAGGAGTGC
TTCAACAAGC
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protein sequence of EsuBft928_8a-0001

>EsuBft928_8 ID=EsuBft928_8|Name=EsuBft928_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=337bp
MNSRSSLEKPGNPQQAALGDLRSLLGAVVRKPRGDAHGIAVDHPAVAEAK
RRALQKGGPFDHFPLPSPSQTDRELLEKGAEQCHFTSAILRGINHEDGRE
AGTPYLTDGDGNCLLNAVAMLLVKKQPRGVRNAVKTMAAQLRLGIVVEGL
RNIEVYLDRKYEFYGTWYNYVDQLVFDLKRCGWVVDAMPENRWRMASLTS
VQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYK
RLNGGRIRELNHFVALSHDNTAKYHETAVTRMAGLVRLAQDDCKESEARL
KEAVGDSGGSPSAPHTCTELADAQGKAQEQLGRRQAA
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mRNA from alignment at Scaffold_611:40925..43372+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft928_8a-0001 ID=EsuBft928_8a-0001|Name=EsuBft928_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2448bp|location=Sequence derived from alignment at Scaffold_611:40925..43372+ (Ectocarpus subulatus male Bft15b)
TTCCGTGCCTCGTCGGCCTCGGTCCCAGACCGCGCTACGCCGACGAAGGT
GTACATCGATCGGAATGAATTCTCGGTCTAGCCTGGAGAAGCCGGGGAAC
CCTCAGCAGGCCGCGCTCGGTGACTTGAGGTCGCTGTTGGGTGCTGTCGT
GCGGAAACCTCGCGGGGACGCCCATGGCATCGCAGTTGACCATCCAGCTG
TGGCGGAGGCCAAACGTCGCGCCCTACAGAAAGGTGGCCCCTTCGACCAT
TTCCCTCTACCTTCACCGTCCCAGGTGTGTGCATACAACGGGGGTACATG
GTATAGGGACCGCACAACTTAATAGGCTTGAGTCCGGAAGCTGGCCCTAG
TGCACCGCGGGTTCCAAAATGGTTCGGAAATCGATTCAAATTCGATTCAA
ATTCCGTTCAAATTTCGGGCAAATTTAGCGGCGCCGTTCATGTCGTTCAT
GCTTCGCGTTCGTGTTAGCCTACATGTCCGCCTGCGTATATATGCTGCGC
AATGCAACAGTACGAGACTATTTGTTACCTCATTTCCACGGCGACGATTT
GAACAACTTCGAAGATGCCCCCGAGTAGCAGCTCTAGGGTTAGGGTTAGG
TGATTTCTCGGTTTGTACGTGCGCTACTCAGGCAGGCTACCCTCTAATGG
TGCTGATGAAACTTAGGACATGGAATCAATATGCGCATGAAGTACAGTTA
GGGGTTAGCGCCATCCGTACGTCGAAGATGCTGATGGGGGAAAAGTGCCT
GGGCTAGATACGCACGAAGACAAGTTTGACGATGCTGTACGAGTGTACGG
TTCCTGTCCATCCATCACGCACCGCTTCCCCCATGTTTCTGTCGTACCTG
ACCATGGATGTTCGGAACTACGCAGACGGACCGAGAGCTGTTGGAAAAAG
GAGCGGAACAGTGCCACTTCACCTCCGCCATTCTTCGCGGTATCAATCAC
GAAGATGGGCGTGAGGCAGGCACTCCCTATCTTACGGATGGAGACGGCAA
CTGCTTGTTGAACGCCGTGGCCATGCTGCTCGTGAAGAAGCAACCACGTG
GGGTCAGGAACGCCGTGAAGACGATGGCAGCTCAGCTCCGGCTGGGGATT
GTCGTGGAAGGCTTGCGCAACATCGAGGTGTACCTCGATCGCAAGTATGA
GTTCTACGGCACGTGGTACAACTATGTGGATCAGTTGGTGTTCGACCTGA
AGAGGTGTGGCTGGGTGGTGGACGCAATGCCGGAGAACCGTTGGCGAATG
GCGTCGCGTGACTGCGCACGGCTGGTGTTCTTAGGATGTCTGCACCATGC
ACGGGGGTCACCCGATAATGGCGGCAAACCTGCCGGCGTGAGGGCGCATG
CGAAAATTTCGCGAAGCTACGTGTGATTTCTTGTTGACGGCGTGTTGGAA
TTCCTCGCGTGCGTGTCGGTTGCATGCCATAATTCGCAGTCACCAGCGTC
CAGAACGTCAACGGTGGAGAGTGGCAGTGGACCCTGTTCCAACCGCTGGT
CGCACCGGACCCGGGACGTCAGACCGTTCATGTTGTTATGACGTATGTTT
CGAGCGCGGACTACAGACCCCAGTTCAGCGACGCCCACGAGTACAAACGT
CTCAACGGTGGCCGCATCAGGGAGTTGAACCACTTCGTGGCTCTGTCTCA
CGACAACACCGCGAAGTATCACGAAACTGCTGTCACGAGGATGGCCGGTC
TTGTGCGCTTGGCACAAGACGACTGCAAGGAGTCGGAGGCGAGGCTCAAG
GAAGCTGTAGGGGACTCGGGTGGTTCACCGTCGGCTCCTCATACCTGCAC
GGAACTGGCGGACGCGCAGGGCAAGGTGACATCGCGTACAAGTACACGTT
GTTCATTTCCCGCGTTGCGAATGGCACGTAGCGTTTCATTGTGTTGCCTG
CCCGCGTCCCGGTCTACCCGTGCCGATGTTGTTCTCCCCGTCACCGCTTC
CCGGTTCTCTCCGTTGCCTATACCGTTGCCACGGCGTTGAAAAATATGCC
AACGTCCGAACTCCAGGCGCAAGAGCAGCTCGGGCGGAGGCAGGCCGCTT
AAAGATGTATAACGGGCACGTACTTCGTGAGTGTCGACCTTCATTCGTAG
GTAGCGGTGCGGCGCAGAGGTGTGCCTCAACGCGCGTTACTCCAGACCGA
CGTTCCATCCGTTCTTTGCCCCATTTTGTGCCGACCGTTGGAATTCGAGG
CATTGTTGGGATGTGTTACGGTAGCCGACAGGGAGTTAGAGGCCGATTGC
AATTAGTTAGGCAGACCGACCTAACGAGAACTGGAAGGCGTAGGGACCTT
CTGACAGTTTTGGAAATCCTGAGTGAAATGCTTCTTCCTACGGTATGGCG
TTGACGTTTACCCGATGCGAAGTTTCTACGGCGTCCGCAGACCCCGCTGG
CTTCCGCGGCGGAGGTAACCGCGTTGGAGAAGGAGTGCTTCAACAAGC
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Coding sequence (CDS) from alignment at Scaffold_611:40925..43372+

>EsuBft928_8a-0001 ID=EsuBft928_8a-0001|Name=EsuBft928_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1014bp|location=Sequence derived from alignment at Scaffold_611:40925..43372+ (Ectocarpus subulatus male Bft15b)
ATGAATTCTCGGTCTAGCCTGGAGAAGCCGGGGAACCCTCAGCAGGCCGC
GCTCGGTGACTTGAGGTCGCTGTTGGGTGCTGTCGTGCGGAAACCTCGCG
GGGACGCCCATGGCATCGCAGTTGACCATCCAGCTGTGGCGGAGGCCAAA
CGTCGCGCCCTACAGAAAGGTGGCCCCTTCGACCATTTCCCTCTACCTTC
ACCGTCCCAGACGGACCGAGAGCTGTTGGAAAAAGGAGCGGAACAGTGCC
ACTTCACCTCCGCCATTCTTCGCGGTATCAATCACGAAGATGGGCGTGAG
GCAGGCACTCCCTATCTTACGGATGGAGACGGCAACTGCTTGTTGAACGC
CGTGGCCATGCTGCTCGTGAAGAAGCAACCACGTGGGGTCAGGAACGCCG
TGAAGACGATGGCAGCTCAGCTCCGGCTGGGGATTGTCGTGGAAGGCTTG
CGCAACATCGAGGTGTACCTCGATCGCAAGTATGAGTTCTACGGCACGTG
GTACAACTATGTGGATCAGTTGGTGTTCGACCTGAAGAGGTGTGGCTGGG
TGGTGGACGCAATGCCGGAGAACCGTTGGCGAATGGCGTCGCTCACCAGC
GTCCAGAACGTCAACGGTGGAGAGTGGCAGTGGACCCTGTTCCAACCGCT
GGTCGCACCGGACCCGGGACGTCAGACCGTTCATGTTGTTATGACGTATG
TTTCGAGCGCGGACTACAGACCCCAGTTCAGCGACGCCCACGAGTACAAA
CGTCTCAACGGTGGCCGCATCAGGGAGTTGAACCACTTCGTGGCTCTGTC
TCACGACAACACCGCGAAGTATCACGAAACTGCTGTCACGAGGATGGCCG
GTCTTGTGCGCTTGGCACAAGACGACTGCAAGGAGTCGGAGGCGAGGCTC
AAGGAAGCTGTAGGGGACTCGGGTGGTTCACCGTCGGCTCCTCATACCTG
CACGGAACTGGCGGACGCGCAGGGCAAGGCGCAAGAGCAGCTCGGGCGGA
GGCAGGCCGCTTAA
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