EsuBft928_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft928_6a-0001
Unique NameEsuBft928_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_611contigScaffold_611:69859..72448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLT6
ProteomeIdEsuBft928_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR004344
Protein domainsPTHR12241
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsIPR027751
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteprobable tubulin polyglutamylase ttll9 os:rattus norvegicus gn:ttll9 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length557
Evalue2.79e-66
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameTTLL9
KEGG koko:K16603
Descriptionprotein polyglycylation
COG categoryS
BRITEko00000,ko01000,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0018095
GO0035082
GO0005737
GO0070740
GO0044430
EC6.3.2
GO0005929
GO0003351
GO0015630
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft928_6aEsuBft928_6aEctocarpus subulatus male Bft15bgeneScaffold_611 69859..72448 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_6a-0001-exonagat-exon-45934Ectocarpus subulatus male Bft15bexonScaffold_611 69859..70173 -
EsuBft928_6a-0001-exonEsuBft928_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_611 70689..70821 -
EsuBft928_6a-0001-exonagat-exon-45935Ectocarpus subulatus male Bft15bexonScaffold_611 72340..72448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_6a-0001-cdsEsuBft928_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_611 69859..70173 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_6a-0001-exonagat-five_prime_utr-15052Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_611 72390..72448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_6a-0001EsuBft928_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_611 69859..72389 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft928_6a-0001 ID=EsuBft928_6a-0001|Name=EsuBft928_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=557bp|location=Sequence derived from alignment at Scaffold_611:69859..72448- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGTCTTGACCGTCTGTGAACTGCGAGTGCGTTCGTCCATCTCGGCGCT
CGGCGAGTCATGGCGGCTGCAAAGGGTGCTGCTCTACTGGGACCGACAAT
CGTTTTTCGGTGCTCCACCCGCAACACGGTGTACGAGGTGCTCAAGGCAA
GGCCCGGGTGGGTCGAGACCCAGGACGATGTCGACTGGGACCTGTGCTGG
GCGGACGTCGGCTGGGTCAGAGACATGTACGACCAAATACAGATGGACGA
CGACCAGCGGCTCAACCACTTCCCCAACCACTACGAGTTGACGCGAAAGG
ACTTGATGGTGAAGAACCTCAAGCGAATGCGAAAGCAGCTGGAGAGGAAC
GACTGCCAAGCGGAAGCTGCAAGCTACTGGTCGCTTTATTTTGTTTGCGG
TGCTGATGTTCGTTGTTTGCGCTTTTCGTTATTGTTGTCGTTGTCGCTGC
TTCTTATCGTCGGTCATATACAGTTGGTGTTGGTGTTGGTGTTGGCGTTG
CCACTATTGTCCCTCGTGATTGGCGATACTGTCGGGAGGGGGGGGGGGGG
GGGGNNN
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protein sequence of EsuBft928_6a-0001

>EsuBft928_6 ID=EsuBft928_6|Name=EsuBft928_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MAAAKGAALLGPTIVFRCSTRNTVYEVLKARPGWVETQDDVDWDLCWADV
GWVRDMYDQIQMDDDQRLNHFPNHYELTRKDLMVKNLKRMRKQLERNDCQ
AEAASYWSLYFVCGADVRCLRFSLLLSLSLLLIVGHIQLVLVLVLALPLL
SLVIGDTVGRGGGGGX
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mRNA from alignment at Scaffold_611:69859..72448-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft928_6a-0001 ID=EsuBft928_6a-0001|Name=EsuBft928_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2590bp|location=Sequence derived from alignment at Scaffold_611:69859..72448- (Ectocarpus subulatus male Bft15b)
TGCGTCTTGACCGTCTGTGAACTGCGAGTGCGTTCGTCCATCTCGGCGCT
CGGCGAGTCATGGCGGCTGCAAAGGGTGCTGCTCTACTGGGACCGACAAT
CGTTTTTCGGTGAGTGGGGGATTGGATAAAAACTCACGGAACTGTCAGCT
GTGTGAGTTGTAATCCTGTGTTTGAAATCCGCGGATCCATCTCAAGATCT
ACTCACACTTAAGCACTACTGCTGTACACCCGCCACGCCCGGCAGTAGCC
ACGTAGGGGCGGCACTGTAAAGCCTGCGTGTTCATACATTGATACTCACA
CGTTAAGCACTCTAACCCATCTGCAAAGCACATATCCAAGCAACGACCGC
GCAGGCTGCCTCTAAGCGATTCCCACGCTCGTTCCAGGGGTTGCGCCCTA
TTGGACCCGTAGCCTGCAGCTTGCAGCTTGCTGTAGCGCACGCTCCTCTT
TGGTTGTGGGAAAGACAAAGCGCGAGGGCTTTGCCGGCCGAATTTCAGGC
ATTATGTCCTTGCCTGTAGAGCCAGCCACCTATATATCAAGCCCGTAGAC
GGCCCGGTAGAAGTTTTTTTTTTTTCTCCCATCATCGGACTCTGTTGTCT
GCCCCTCTGGCCCCTATCCTCCACTTCTACCAGCTAGACGACCCAACCGG
GGTCACATAGGAGGGGGGGGTTGGACCCCTCCTGCGGTTTCTGCCTGAGA
TATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCGCGACTTACGA
AATCGATCAAGTTTACTAACAATGAGCTTTGCAGCGCATCGCTTCCAACG
GAGACCAGGATTTAATTAGCGAGAAAAAACTCACCCTGTCGGGACTCAAA
CCCATGACCTGGCCGAAGTGTGCGTGCTTCATTACCGATGGTACAGCAGC
AGACTACTGGTGAACAGGTCTACGCTCTTGCGTTCCAGCACTACAGCATC
TGTGTACCGCCGACTTCCAACGTCGACGGTATCTGCTGTTGGTGCAATCC
ACACGGCCTGCTGGCAACATGAAGCTACGGTGCATGTCTGCACACAGATG
CCTATGTGCGCCAACGCTTGGGCATGTCATACTCTCGAACATGGGACAAG
AAATCCTGTGGCAAGTCTGGTGTAGCAAGACGGCTTTTTACATCACGAAG
AAGTGGTCCGCCGGAAGAAGCAAATATGTCGCGAGCGTCGCTTGCGTGTT
TCAGCATGGTGCACGCAGGAGAATCGAACCAACCCGTCAAAAGATTGAGT
GATCGGATAGGTTCGGGTTTGTGTTGCTTGGTGTGTCTCTCTCGCACTTT
TTTTCTCGCGCAGGGTCCTGATAAAAGGCGGGCCGGAAACTCTCTCTCTT
TCTCTCTCTGTATCTCTCTCTCTCTCTCTCTCGGCACCGTCCTCGTTTCC
TCCGAGTCACGGGATGAACACACACAGTCAAACCTGAGCTACTACAAGCA
TCTATATCATGGCGTGCTCGGCGTATTTTTCGCCATTTGTATTGGTGCCT
GCTGGGTGGTCTTGCAAGCACGACTATGGACGCCTCCTTTCAGAATCAGC
GAAAGCTACAGCTGTTGTGCCGCCGACTCCATACCCCCCCTAACACCAGC
GTGATTTCCCGGAACCTTTTCGGGTAGGTGCTCCACCCGCAACACGGTGT
ACGAGGTGCTCAAGGCAAGGCCCGGGTGGGTCGAGACCCAGGACGATGTC
GACTGGGACCTGTGCTGGGCGGACGTCGGCTGGGTCAGAGACATGTACGA
CCAAATACAGGTACGTACACGCTGCTGCAGATCTCGGGGGCTTGGGGAGT
ATAGATACAGATATGCACGGCCAAGTGCAGGCAACCGCTTCAGATCTCGA
GACACACCTCGGGTCATGGCTAGGTCTAGGCTGGGGGGGCTGGAGACGTA
CACGACCAGTTACTAAAGTAGGCTAGCGCGGTAGGTTGTGTGTGTGCTAT
CTGGGTTATGGCTGCGCCCAGGGGCAGAAGAAGCTCGGAATCCCCGCCTG
CCTAAACAACTTGAAAAATGAATCCAATCCGCGTGCCCCCCCATCATTGC
AGGGTTCACTTTTGTAGGGGAGTGAACTTGGCTCCCGACACATCGACTTG
CGCACGTTTTTCTTCCTCTGGCTACGCGAAGTCTGTGGTCAAAATATCGA
AAAAATGAGGCGGGTTTTGTACCTCTTCGTTCACGTATCCCGTCCCCCAA
CAAGCCTACCACCGCCGTTGTACCTATGTGTCGTACACCGTGACTTGCTG
CATGTGTGCACCGAGAATTTCCCAGATGGACGACGACCAGCGGCTCAACC
ACTTCCCCAACCACTACGAGTTGACGCGAAAGGACTTGATGGTGAAGAAC
CTCAAGCGAATGCGAAAGCAGCTGGAGAGGAACGACTGCCAAGCGGAAGC
TGCAAGCTACTGGTCGCTTTATTTTGTTTGCGGTGCTGATGTTCGTTGTT
TGCGCTTTTCGTTATTGTTGTCGTTGTCGCTGCTTCTTATCGTCGGTCAT
ATACAGTTGGTGTTGGTGTTGGTGTTGGCGTTGCCACTATTGTCCCTCGT
GATTGGCGATACTGTCGGGAGGGGGGGGGGGGGGGGGNNN
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Coding sequence (CDS) from alignment at Scaffold_611:69859..72448-

>EsuBft928_6a-0001 ID=EsuBft928_6a-0001|Name=EsuBft928_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_611:69859..72448- (Ectocarpus subulatus male Bft15b)
ATGGCGGCTGCAAAGGGTGCTGCTCTACTGGGACCGACAATCGTTTTTCG
GTGCTCCACCCGCAACACGGTGTACGAGGTGCTCAAGGCAAGGCCCGGGT
GGGTCGAGACCCAGGACGATGTCGACTGGGACCTGTGCTGGGCGGACGTC
GGCTGGGTCAGAGACATGTACGACCAAATACAGATGGACGACGACCAGCG
GCTCAACCACTTCCCCAACCACTACGAGTTGACGCGAAAGGACTTGATGG
TGAAGAACCTCAAGCGAATGCGAAAGCAGCTGGAGAGGAACGACTGCCAA
GCGGAAGCTGCAAGCTACTGGTCGCTTTATTTTGTTTGCGGTGCTGATGT
TCGTTGTTTGCGCTTTTCGTTATTGTTGTCGTTGTCGCTGCTTCTTATCG
TCGGTCATATACAGTTGGTGTTGGTGTTGGTGTTGGCGTTGCCACTATTG
TCCCTCGTGATTGGCGATACTGTCGGGAGGGGGGGGGGGGGGGGGNNN
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