EsuBft928_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft928_3a-0001
Unique NameEsuBft928_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_611contigScaffold_611:95355..100155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft928_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length125
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002870.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft928_3aEsuBft928_3aEctocarpus subulatus male Bft15bgeneScaffold_611 95355..100155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_3a-0001EsuBft928_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_611 96115..98302 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_3a-0001-exonEsuBft928_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_611 95355..96239 -
EsuBft928_3a-0001-exonagat-exon-45917Ectocarpus subulatus male Bft15bexonScaffold_611 96930..97011 -
EsuBft928_3a-0001-exonagat-exon-45920Ectocarpus subulatus male Bft15bexonScaffold_611 97562..97592 -
EsuBft928_3a-0001-exonagat-exon-45919Ectocarpus subulatus male Bft15bexonScaffold_611 98223..98381 -
EsuBft928_3a-0001-exonagat-exon-45918Ectocarpus subulatus male Bft15bexonScaffold_611 100057..100155 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_3a-0001-exonagat-three_prime_utr-23144Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_611 95355..96114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_3a-0001-cdsEsuBft928_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_611 96115..96239 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_3a-0001-exonagat-five_prime_utr-15048Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_611 98303..98381 -
EsuBft928_3a-0001-exonagat-five_prime_utr-15049Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_611 100057..100155 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft928_3a-0001 ID=EsuBft928_3a-0001|Name=EsuBft928_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1256bp|location=Sequence derived from alignment at Scaffold_611:95355..100155- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGTAGCGGGGACCAAGTATCCCTGTGCGTCGTCAACCTGTGCTTTGTGGC
CTTGGCGGGACAGATTCTCAAGTGTTTTATCCTTCCGGTTGGTCAAGAGA
GTGGCGCACTGTACCATGAGCGTTCCAGTGTGGGGCCTCGCGAAGGGGAC
TTCGGTCTTCAAGGCTAACACGAGAGTCATGAAGAAGCTCATGCCCACAA
TCAAGGAGGTCAAGTGCATCATGAACCCCCTCGACGGCGGGCACAGCACG
GCCGCGAAGGATGTACTACGAAGACTCCAATCCAATGTGCTGACGAGCGC
AAGCCCGGACACAAAGATCGTGGGAGTATATAAGTACGAGGCGTGCTGGC
CAATGGTGGAAGCGACTTACGCGGACGGTACGGTGAGAAAGTGGTGGGCG
CACGTTCTCCCCGCGCAGACTCTCATGTCAGAAGTTTTTATGTACGCGCA
AATGGCGTACAACAACCCGGACAACCCAGCGAACAAGGGCAAGTAGTTTG
GCTTTTTTTTTTTGTTTTTTCCCGTTGTGGATGTAGAAGATAATAGCACC
TGAAGAGTGCCGTATTTTGCAGGGGGCAGGGGCTTGTTGGAATGATTGTT
GGTCGGGTTGTTTGGCCCTTTGTGCCGTGCTTGTGTGGTCCGGGTGTTTT
CCTATGCTTCTCTAAGAGAGTCATTTGTGTTAGCTCCCCTGTAAGTGTTT
TCTCGTGGGACTGCTGTGTGCGGCGCAACAGCTTGGTCAGTGCGGTTGCG
ACCCTTGCCTCTGGCGTGTGCATACATGTGACGAACCAGCGTTGACCGTG
GGATGTGTTGAAACTGCCGAATAATTCAGACGGCATCCACGCTCTGGGAA
AACGTTTCGTCCGCGATGGGAGAATCTTGTGCTGCATTCTTGTTTTTCCA
TAGGCAGCCTTTGGGATCATGTTTTGATTCTAGTTTTCTTGAGCTAGGTA
CGGTTTTTGTGTGGTTATTCCATGCGTTTCATGGTGTTTGATTTGACGAA
ATACGTACGGGGTACAGTAGGCATGTGGCAACGTTGAAGACTCTAGAACA
GATATCAGACAAAACAAGCTTGCGCTTGGAACGGATCATGTGGTGTGGTC
TCTTTTGCGTGGCTGATGTATTTCGTCCTGAGCAACGGGCACCAATACCC
AACGCTCAGGTACCACGACATCACACAAGCTCCAATAAAATTGTACCATT
ATGGTTCCATATACGACATGCTCGTGGGGTGCGGGGCACGCCCAGGGTCT
CTAAGT
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protein sequence of EsuBft928_3a-0001

>EsuBft928_3 ID=EsuBft928_3|Name=EsuBft928_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MKKLMPTIKEVKCIMNPLDGGHSTAAKDVLRRLQSNVLTSASPDTKIVGV
YKYEACWPMVEATYADGTVRKWWAHVLPAQTLMSEVFMYAQMAYNNPDNP
ANKGK
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mRNA from alignment at Scaffold_611:95355..100155-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft928_3a-0001 ID=EsuBft928_3a-0001|Name=EsuBft928_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4801bp|location=Sequence derived from alignment at Scaffold_611:95355..100155- (Ectocarpus subulatus male Bft15b)
AGTAGCGGGGACCAAGTATCCCTGTGCGTCGTCAACCTGTGCTTTGTGGC
CTTGGCGGGACAGATTCTCAAGTGTTTTATCCTTCCGGTTGGTCAAGAGG
TGCGATTGCTGAGTGATTTCGCGTTGTTTCCGGGGCGTGAGGATATGATA
TCTCCACAGCGTGCTCTCGTTGTGAACAAGATGTTGCGGCAGTTGTAGAT
TGCTGAGTGTACTTCGGTCTTCGGACCTGCGGTATCTGCTGGAGGGCAAG
CAAATATCTGTACATGTGTGACGTGCCCATCACGACACTGCGGTCACCAT
TCCTGTCTCACGCTACCGTTGTTAGTCCTTATCGCATATACTATTGTTGT
TCTCTACCACAAAACTTGTCGAACCTCCGCCGCCGCCGCCGCCTGCCGTC
TGCAACGAGACCGGTAAGGTAAGCCTATCTATAAAACTTGTACCAGGGAG
CGGCTCCGGGTACAGTACACATTGCAGCAGAATTCCACGCTTTGGGCAGC
ACGTGTTTTGATTGTGGTTGCGTTTTTCTGTTCCGCCCGCCGACCGTAAT
CATATGCGTCTTGCCAAGTGCTTGCAGTAGCATACCTTTGCAGCACGGGT
ACATTTGTGCAGTGCCTTGTGTCTACAGAACTGGCCCGGAGATAAGAAAC
GTTGCCGAAGCGCCAGCCGCAGGTAGGCCAAGTTCTTAAAACGGAGTTCT
TATTTCCGTTGGGCTGCCGCATCATCCTGTGCTCTCATTTCTCTTATTTT
CTTTATATCTGCGACGAAATCATCAACACGCCAACCCTTTTCATGCAGCA
TTCGACAGCTCGGTGGTGACTGGGGTTGTCGCCTTCCTGAACTTCGTGAT
TCCCGTGATTTGTGGCACTACCGCAGTACAACACCAGTGGGTAGCGCAGC
CCCGGGGCCCGGGGGGCGACGCGAAAATATCCACTCTCCCCCCCTACCAA
AACATTGCATGATGAGCTAGCACAGGTTGTGGTGGGAGCTGGCAGCAGCA
GTGGGACGTTTCGTATTGGACACGCTTCCTCAGCTATCCGTTGTTTTTTT
GTCTCGGAGTATCGTTCGATCATGTTTCTTATTGCGACGTTTCTTATGCC
GTTGCCGAGACAGCTGAGTTTCTTATCCCTTTCTCCTAATTTTTCGTAAT
CATTTGAGCTTTCTTTTCTCAACAGAATTTTTTTTTATTGCGGGCCTGTT
CTGTACAGCAGCACCGCCTCGTCGCTCGTTTCGGTCTTGGAGTCCTCCCT
CGATCAGAAAGTTGACTGGAGATGGCGGTGCTAATTTAACATGCTGTCTT
TGACCTTTCTTTGGTCTCGTCCCGTCCACCCGGGTACTGCTGTACCAATA
GTCGACCAAGTGCTCTTTGCGAGCGTGTTTGCTTTCAGTACCCATCGTGG
TCGACGCACCCGCCAGGGTCGCAGGACGAATTAGAAATCAACGTCCTTCG
GTTCTTGCTACGATCAACTCTCGGTCGCTCATTGCAAATCCAAGCGCCAA
TCCTATGTACCTGCGGAAACTCCTCAACGTCTGATTCTCGACAATATTTT
ATTTACAATGCAAGGTTTCCTTCACGGCCGTCCTCCTACGATATGTCTGA
CTTCCTGGGGCCGTGATTCTCCGTTTGAGCTGTATATATGGCGTTTGTGG
TGGTGGTTTTCTGAATCCTTTGTTTCCCTTGTTTCCAATATGTGCCTTCT
TTCGATGAATCACCTGTTCCGACTCTCATCCGCCCCTATCGCGTCTCCCA
ACCACCGACCCCCCTGTCTCTCAGAGTGGCGCACTGTACCATGAGCGTTC
CAGTGTGGGGCCTCGCGAAGGGGACTTCGGTCTTCAAGGCTAACACGAGA
GTCATGAAGAAGCTCATGCCCACAATCAAGGAGGTCAAGTGCATCATGAA
CCCCCTCGACGGCGGGCACAGCACGGCCGCGAAGTGAGAAAAAATCTGCG
CTGCGTTTGTTGATGCTGTTGCTGCTGTTGCCGTCGGGCGTTCCGCTTGT
TGTGTTTCGCGGGGTGATATTGGCACCTGACTATTTCCACCAAAGCTAGG
GGTGTCGTCCCGTACCTTTTGTCGTTGAATCAGCGGGGAACGAATGCTGT
GTAGAGGATACGGACGCATGTGTTGTGGCTCAACATCCTGGAGATGGTGT
CTGTTTAACAGCATGTGTTCACACTTCGTTTTGCCCCGTTTGAGCTGTTT
TTTCTCGAGTTGACCCGTTATAATGTTGGTCCTCATTCGTTTTCCTGTTT
TCCTTCGGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCAC
GCTGGGCTGATATTTTCTGTGCCCTCCCCCCTGGGCTGTCGTCCTTGCTC
TTGCCCTTGCCCTTGCCCTTGCCCTTGCCTTCGTGTTCGCCTCCCGCCCC
TCAATTGTACATGATCCATCGGCGGGGGCGTGTTTGTGCCACGCGTGGGG
GACGCGACGACAGGGATGTACTACGAAGACTCCAATCCAATGTGGTGAGA
CTCCTTGTTTTTGTCCCATCCCGTTTGTTCTTTTTTGCCCCTTCTATGTT
GTCTCTCTTCTTCCCTGCCACTCGAGTATTATGAGGTCCGGGGGGGTGGT
CCAACACAAGTCCCTCTGGGCCCCCCAAATGAGTGCGGTAACGGTGGCAA
ACTTGGAGGCTTATTTAGGGTTTCATGGGAAAAATCGGCGCAATCCAGCG
ACGGGCATACGACGGGCTTGTTCCGAGCGGAAGTTTAGCGTTCGCGAGAC
TCTGGTGTCGAGCTGTACAAGCAATCCACGCTTTCGGCGCAATCGCGCCG
GTAAGTTTCAGCTCCGCTCGTACTGCTGAATAGGCGACAAGTGGTCGCTA
TGTTGCTTGCATCTCTCTGGGCGTCTCTAAGCTCGAGAAACCCAGCACCC
CCCGCTCCCCAGGACGTTCTACCGATATGGTGATGCCTCTGTCCGTGCTG
GGAAGTGTAGTATCTACTTTTCGGTTCACGCCTTGAACACATCGTGCATC
TTGTCCTCCATGTTTCTGCTTTTTTTTGTGTGTGTGATTTGAAGCTGACG
AGCGCAAGCCCGGACACAAAGATCGTGGGAGTATATAAGTACGAGGCGTG
CTGGCCAATGGTGGAAGCGACTTACGGTGAGCGCTTCGTGTGTGCAGAAA
TTTCGTGGCAACATGAGCAGCAGGAGAAGGGCGGTTACAATACCTAGCGC
GAACGCGCTTCGATGCTGTGCCCCCTTAGGTGGGGCGGCTCGCGTCGTTT
TTCGACAGGTTTTCTTGTTGAAAGCAAAACCCCGCGAACACTTGCTGCAC
TCTCTTCTGACCCGTGACCCCTGTCCCTGTTGTTTTTGTGAATCGGCGCG
CATCGATATTTCGTCCCTCAAACTGAAAACCATGAAATGCACAAACAAAA
AATAAAACTCACAGACCTATGTACAGTATATCTGAACAAGTAAATCATGT
AGGAGAACCATATATGAATTCCAGCAGGTGTAGTATAATTGTGCTCCTTG
TTGAGATCCTCTTTGTCTTGTGTACGATCCCCCGACGTCTGTCGAGGACG
ATTCCCTCTGTTCACGCCCTCTTTGTTCGTTTGTCTCTGTGTCGCCCCTT
GCGATTGTTGCACGCCGAATTCAAAAGGGTATCTCCCCCAGTTGGGGGGG
TTGCCCCCAGATGACGACACAGCACATACGCTTACGCCGGGCGCATTCAC
CCTCTCCCTGTGTTTGTTTTATTTGATTCAACAACTTGTCCGTTGTGTCT
CCCCCTTCCGCCCCCCGTATTGTATTCTCTCTGACCTTGTTCCGGTTATT
TTTTTTTGTCCCGCAGCGGACGGTACGGTGAGAAAGTGGTGGGCGCACGT
TCTCCCCGCGCAGACTCTCATGTCAGAAGTTTTTATGTACGCGCAAATGG
CGTACAACAACCCGGACAACCCAGCGAACAAGGGCAAGTAGTTTGGCTTT
TTTTTTTTGTTTTTTCCCGTTGTGGATGTAGAAGATAATAGCACCTGAAG
AGTGCCGTATTTTGCAGGGGGCAGGGGCTTGTTGGAATGATTGTTGGTCG
GGTTGTTTGGCCCTTTGTGCCGTGCTTGTGTGGTCCGGGTGTTTTCCTAT
GCTTCTCTAAGAGAGTCATTTGTGTTAGCTCCCCTGTAAGTGTTTTCTCG
TGGGACTGCTGTGTGCGGCGCAACAGCTTGGTCAGTGCGGTTGCGACCCT
TGCCTCTGGCGTGTGCATACATGTGACGAACCAGCGTTGACCGTGGGATG
TGTTGAAACTGCCGAATAATTCAGACGGCATCCACGCTCTGGGAAAACGT
TTCGTCCGCGATGGGAGAATCTTGTGCTGCATTCTTGTTTTTCCATAGGC
AGCCTTTGGGATCATGTTTTGATTCTAGTTTTCTTGAGCTAGGTACGGTT
TTTGTGTGGTTATTCCATGCGTTTCATGGTGTTTGATTTGACGAAATACG
TACGGGGTACAGTAGGCATGTGGCAACGTTGAAGACTCTAGAACAGATAT
CAGACAAAACAAGCTTGCGCTTGGAACGGATCATGTGGTGTGGTCTCTTT
TGCGTGGCTGATGTATTTCGTCCTGAGCAACGGGCACCAATACCCAACGC
TCAGGTACCACGACATCACACAAGCTCCAATAAAATTGTACCATTATGGT
TCCATATACGACATGCTCGTGGGGTGCGGGGCACGCCCAGGGTCTCTAAG
T
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Coding sequence (CDS) from alignment at Scaffold_611:95355..100155-

>EsuBft928_3a-0001 ID=EsuBft928_3a-0001|Name=EsuBft928_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_611:95355..100155- (Ectocarpus subulatus male Bft15b)
ATGAAGAAGCTCATGCCCACAATCAAGGAGGTCAAGTGCATCATGAACCC
CCTCGACGGCGGGCACAGCACGGCCGCGAAGGATGTACTACGAAGACTCC
AATCCAATGTGCTGACGAGCGCAAGCCCGGACACAAAGATCGTGGGAGTA
TATAAGTACGAGGCGTGCTGGCCAATGGTGGAAGCGACTTACGCGGACGG
TACGGTGAGAAAGTGGTGGGCGCACGTTCTCCCCGCGCAGACTCTCATGT
CAGAAGTTTTTATGTACGCGCAAATGGCGTACAACAACCCGGACAACCCA
GCGAACAAGGGCAAGTAG
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