EsuBft927_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft927_6a-0001
Unique Name	EsuBft927_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:565886..567289 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft927_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	140
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft927_6a	EsuBft927_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 565886..567289 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_6a-0001-exon	EsuBft927_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 565886..567289 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_6a-0001-cds	EsuBft927_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 565886..567067 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_6a-0001-exon	agat-three_prime_utr-23138	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 567068..567289 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_6a-0001	EsuBft927_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 565886..567067 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:565886..567289+
coding sequence from alignment at Scaffold_245:565886..567289+

spliced messenger RNA

>EsuBft927_6a-0001 ID=EsuBft927_6a-0001|Name=EsuBft927_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1404bp|location=Sequence derived from alignment at Scaffold_245:565886..567289+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGACGCTATCAAAGAACTCAACCAGGAGCATGGAGTATCGGTGGA
GATTCTGAAGGGGATCCTTCCCCCGTCATGGGTTGAGTGGGCCTTAGAAC
CGACAGGAGAAACCGGAAGACGTCAGCCCACCGTTGCAGAACGGGCAGCA
CACGATGGGGAATCTACTACGCCGAGGAAAGCCCAGCACAAACTGGGCAA
GGCGATTAACAAGATACAACTTGAAAAGTTCATGGAGTCTCTGGAGCACC
TCCCCCAGGAGGCGGTACCACCCACGCGGGACAACCCCTACGGAGGTCAA
GAGGCCAGGAACATGGCATACGCACGAACGAGAAGCTCGCAAGGGCAAGG
GGGGCACGCGTTCCTGAGAGCGGCTCCCACCGACCGAGCTCGAGAGATTC
CATCGAACGAATTCGTCTACGCGACGAGACGCGCCTTGGGAGTTGAAGAA
TTCTTGGCGGAAAGATGTCCCAGGTGCCACAGAGGCAGGGAAGGCGAGAT
CATCACAACGGTGCACGCAAGGACCTGTCGAAGGGATGGAGCACAGGTCA
ACATGCACGAGCCGTTAAAATACGCACTATCGAGAGCACTCAACGGCCTT
CGCGTCAAACACGACGTTGAAAGCGGGGCACCGTTCACGGGGGAAAGAAA
CCTGAGCATGGACATCGTCATCAGGCCAGGAGCCCTCACGAACGCATCTT
CTCCGGGGTACCGCAACAAAGGAATACTCCTCGATGTCACACACGCAGAC
CCGCAAGCACAGGTACACTTGCGGAACGGCAGCGCGACCAGCGATGGAAT
CGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCACTACGCTCGTCCGG
GACACGTGTCCTTTGACGAACGCAGCTTTAAACTTACCACCTTAGCCGTG
GAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCGATGAACT
TGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCTCTGAAAG
GAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTG
GCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCA
AGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCAATGCCAA
TGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGTTTGAA
GTTGGCGTCTTGTTTTGAGAGTAGATGTGACAGATTTGCGTAGAATAGGG
TAAGATGTTATCATGAACGGAGATGAAAGGGCTTTTCCAACACGGAGATG
TGGCATGGATCAAAGCATTTGTTGGATTTCACCTTTTACAAGCGGACATC
AACGCAGTAGTATTTTAGCAAGCTTACGAACGCACATAGGATACCATCAG
GATT

protein sequence of EsuBft927_6a-0001

>EsuBft927_6 ID=EsuBft927_6|Name=EsuBft927_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=393bp
MGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGRRQPTVAERAA
HDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQ
EARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEE
FLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGL
RVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHAD
PQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAV
ESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQV
AISRRVQRYKLALRGRQDAENRRTRSTSDQSMPMIWGWSVDAS

mRNA from alignment at Scaffold_245:565886..567289+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft927_6a-0001 ID=EsuBft927_6a-0001|Name=EsuBft927_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1404bp|location=Sequence derived from alignment at Scaffold_245:565886..567289+ (Ectocarpus subulatus male Bft15b)
ATGGGGGACGCTATCAAAGAACTCAACCAGGAGCATGGAGTATCGGTGGA
GATTCTGAAGGGGATCCTTCCCCCGTCATGGGTTGAGTGGGCCTTAGAAC
CGACAGGAGAAACCGGAAGACGTCAGCCCACCGTTGCAGAACGGGCAGCA
CACGATGGGGAATCTACTACGCCGAGGAAAGCCCAGCACAAACTGGGCAA
GGCGATTAACAAGATACAACTTGAAAAGTTCATGGAGTCTCTGGAGCACC
TCCCCCAGGAGGCGGTACCACCCACGCGGGACAACCCCTACGGAGGTCAA
GAGGCCAGGAACATGGCATACGCACGAACGAGAAGCTCGCAAGGGCAAGG
GGGGCACGCGTTCCTGAGAGCGGCTCCCACCGACCGAGCTCGAGAGATTC
CATCGAACGAATTCGTCTACGCGACGAGACGCGCCTTGGGAGTTGAAGAA
TTCTTGGCGGAAAGATGTCCCAGGTGCCACAGAGGCAGGGAAGGCGAGAT
CATCACAACGGTGCACGCAAGGACCTGTCGAAGGGATGGAGCACAGGTCA
ACATGCACGAGCCGTTAAAATACGCACTATCGAGAGCACTCAACGGCCTT
CGCGTCAAACACGACGTTGAAAGCGGGGCACCGTTCACGGGGGAAAGAAA
CCTGAGCATGGACATCGTCATCAGGCCAGGAGCCCTCACGAACGCATCTT
CTCCGGGGTACCGCAACAAAGGAATACTCCTCGATGTCACACACGCAGAC
CCGCAAGCACAGGTACACTTGCGGAACGGCAGCGCGACCAGCGATGGAAT
CGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCACTACGCTCGTCCGG
GACACGTGTCCTTTGACGAACGCAGCTTTAAACTTACCACCTTAGCCGTG
GAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCGATGAACT
TGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCTCTGAAAG
GAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTG
GCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCA
AGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCAATGCCAA
TGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGTTTGAA
GTTGGCGTCTTGTTTTGAGAGTAGATGTGACAGATTTGCGTAGAATAGGG
TAAGATGTTATCATGAACGGAGATGAAAGGGCTTTTCCAACACGGAGATG
TGGCATGGATCAAAGCATTTGTTGGATTTCACCTTTTACAAGCGGACATC
AACGCAGTAGTATTTTAGCAAGCTTACGAACGCACATAGGATACCATCAG
GATT

Coding sequence (CDS) from alignment at Scaffold_245:565886..567289+

>EsuBft927_6a-0001 ID=EsuBft927_6a-0001|Name=EsuBft927_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1182bp|location=Sequence derived from alignment at Scaffold_245:565886..567289+ (Ectocarpus subulatus male Bft15b)
ATGGGGGACGCTATCAAAGAACTCAACCAGGAGCATGGAGTATCGGTGGA
GATTCTGAAGGGGATCCTTCCCCCGTCATGGGTTGAGTGGGCCTTAGAAC
CGACAGGAGAAACCGGAAGACGTCAGCCCACCGTTGCAGAACGGGCAGCA
CACGATGGGGAATCTACTACGCCGAGGAAAGCCCAGCACAAACTGGGCAA
GGCGATTAACAAGATACAACTTGAAAAGTTCATGGAGTCTCTGGAGCACC
TCCCCCAGGAGGCGGTACCACCCACGCGGGACAACCCCTACGGAGGTCAA
GAGGCCAGGAACATGGCATACGCACGAACGAGAAGCTCGCAAGGGCAAGG
GGGGCACGCGTTCCTGAGAGCGGCTCCCACCGACCGAGCTCGAGAGATTC
CATCGAACGAATTCGTCTACGCGACGAGACGCGCCTTGGGAGTTGAAGAA
TTCTTGGCGGAAAGATGTCCCAGGTGCCACAGAGGCAGGGAAGGCGAGAT
CATCACAACGGTGCACGCAAGGACCTGTCGAAGGGATGGAGCACAGGTCA
ACATGCACGAGCCGTTAAAATACGCACTATCGAGAGCACTCAACGGCCTT
CGCGTCAAACACGACGTTGAAAGCGGGGCACCGTTCACGGGGGAAAGAAA
CCTGAGCATGGACATCGTCATCAGGCCAGGAGCCCTCACGAACGCATCTT
CTCCGGGGTACCGCAACAAAGGAATACTCCTCGATGTCACACACGCAGAC
CCGCAAGCACAGGTACACTTGCGGAACGGCAGCGCGACCAGCGATGGAAT
CGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCACTACGCTCGTCCGG
GACACGTGTCCTTTGACGAACGCAGCTTTAAACTTACCACCTTAGCCGTG
GAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCGATGAACT
TGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCTCTGAAAG
GAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTG
GCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCA
AGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCAATGCCAA
TGATATGGGGATGGAGTGTAGACGCATCGTAG