EsuBft927_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft927_3a-0001
Unique NameEsuBft927_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:591095..594220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGV9
ProteomeIdEsuBft927_3
Protein domainsIPR025718
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length90
Evalue3.86e-80
EggNOG OGsKOG3038@1|root,KOG3038@2759|Eukaryota
Ec32 ortholog descriptionSGF29 tudor-like domain protein
Ec32 orthologEc-11_000840.1
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K03246,ko:K11364
KEGG Pathwayko03013,map03013
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564
Descriptionmethylated histone binding
COG categoryADK
BRITEko00000,ko00001,ko03012,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft927_3aEsuBft927_3aEctocarpus subulatus male Bft15bgeneScaffold_245 591095..594220 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_3a-0001-exonagat-exon-37077Ectocarpus subulatus male Bft15bexonScaffold_245 591095..591526 -
EsuBft927_3a-0001-exonEsuBft927_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 591993..592091 -
EsuBft927_3a-0001-exonagat-exon-37078Ectocarpus subulatus male Bft15bexonScaffold_245 593843..594220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_3a-0001-cdsEsuBft927_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 591095..591526 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_3a-0001-exonagat-five_prime_utr-15044Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_245 593945..594220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_3a-0001EsuBft927_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 591095..593944 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft927_3a-0001 ID=EsuBft927_3a-0001|Name=EsuBft927_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=909bp|location=Sequence derived from alignment at Scaffold_245:591095..594220- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTGTGTGTAAGCTCGCAGGGGATTACACAACGCAGGCGACAGGCGA
CAGGGTGGCAGGGGTTGCGGCTAGATCAGTGAGAGAGACACGCAGAGATA
TAGGAAGGCACACACGGAAAGTCAGGCATAAAAGGAGGGCTAAGCGAGAG
GTACCTACATCCGTCGTCGGATCGTGGTCTCGCAGACACCTCCCCCTACT
GCTGCTTGCTCGTGTCGAAGCTGCTGCTGTGTCCAGGTCGTCTCACTAGT
AAGCTCCCCCGCTGGATGCCCTCGCCATGAACGGGTTGCGCGATACGGTC
TCCCCAGGGCCGTACTTCCCCTTCCACCGAGACGAGACCTACCCCAGGAC
TCTCTGCGTGAACTTCAAGAGGCTAGAGTATCGTACCCTCCAGAAGTACT
GCAAGCTTCACGGCATCAACGTCCGCCCCGACTGCTCACAGGCCGAGCTG
GCCGTCGCTGCCGCCAGACATTTTCAGGAGGCACCTTCGGTGGACGAAGA
GAATGTGATGGTGTCGTTCCTACAGAAGGTCATCGTTCCCGACCGGCCTT
TCGAGCCCACCATCGACCTCGCCCTCGCCCGCATGGGAAGCCTTAGCGTC
GACACGGCGGACCTCGGAGGTGGTGGAGGCAGCGGCGGCGGAGGGCGGAG
CTCGATGCCCAACGCCATGATGCACGACCACATGGACGACGGCATGAATG
ACGACATGGTGGACAGCATGGGAGGGGAGATGGGGGTCGGCGGAGGGGGC
CGGGGAGGTGTGCACGGCGGCAATGCCGGTGGTGGCCATCATGGCGGCGG
CTACGGCCGTCGCGGTGGTGGACACTCTTCTGCAATGGGTGGAGGGATGG
GGTACGACGAGAAGCCGCGGGCAGAGGGCTACTCGTCCAGGGGAATGGGG
GGGGNNNNN
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protein sequence of EsuBft927_3a-0001

>EsuBft927_3 ID=EsuBft927_3|Name=EsuBft927_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=211bp
MNGLRDTVSPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVR
PDCSQAELAVAAARHFQEAPSVDEENVMVSFLQKVIVPDRPFEPTIDLAL
ARMGSLSVDTADLGGGGGSGGGGRSSMPNAMMHDHMDDGMNDDMVDSMGG
EMGVGGGGRGGVHGGNAGGGHHGGGYGRRGGGHSSAMGGGMGYDEKPRAE
GYSSRGMGGXX
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mRNA from alignment at Scaffold_245:591095..594220-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft927_3a-0001 ID=EsuBft927_3a-0001|Name=EsuBft927_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3126bp|location=Sequence derived from alignment at Scaffold_245:591095..594220- (Ectocarpus subulatus male Bft15b)
TGCTGTGTGTGTAAGCTCGCAGGGGATTACACAACGCAGGCGACAGGCGA
CAGGGTGGCAGGGGTTGCGGCTAGATCAGTGAGAGAGACACGCAGAGATA
TAGGAAGGCACACACGGAAAGTCAGGCATAAAAGGAGGGCTAAGCGAGAG
GTACCTACATCCGTCGTCGGATCGTGGTCTCGCAGACACCTCCCCCTACT
GCTGCTTGCTCGTGTCGAAGCTGCTGCTGTGTCCAGGTCGTCTCACTAGT
AAGCTCCCCCGCTGGATGCCCTCGCCATGAACGGGTTGCGCGATACGGTC
TCCCCAGGGCCGTACTTCCCCTTCCACCGAGACGAGACCTACCCCAGGAC
TCTCTGCGTGAACTTCAAGAGGCTAGAGGTGAGCAGCGAGTCCGTATCAA
CAGGCCGCGGAATTAGCGTTGGGTCTATCCAGCTGGTTGGCACACCATCA
TCTCTACATCCCCAAACGGCAACATACGTACAGCAGAAGCAGCACCCAGC
GCTAGTCCCGTGTCTCGCTGGATGGCGCGGAGTAGGAGGATCCCGTGCCT
TTTGCTCCGCCGCTGGTAATCAGCTAGGCTCACCGGCAGTCTGTTGTCAT
TCCGCGTGTCTGTGGTGTGCTTTCGGAGCGTTCGTTGGTCTCCACATTCA
TCCTCCTCACCGCCGTTGGAGAGTTAGCTGAGAAGCTTTAGCGCTACAGC
TGTTGGTGTTACTCACGGCTGTTGCGGCTCTCCGTCTCTGACGCCCCTGC
AGCAGTACAAGCGTGGCCGCATGTGCGCTGCAGAAGTCTTACAACATGTG
TGCTGCACTCCTCGTGGGGGTTGTTGTTGAACGGCAGCCTCCGGCCTGTA
GGCACACAGCCCGCACATCCTTGCTTCCCTGAAGTCCACACGACGTTCTA
ACGGCGGCCTGGTGCTTGTCGCTGTAGAGCTCTTAAGCGTCCCCTGCCAT
GGTTCACGCCAAGACCGTGGATCCACTCGCTGTACGTACAGCAGCAGTTT
TCTGTGGAGCGTCGGTCGTCGCTCTGGCGTGTATCCCTTGGTGTTGGACG
GACTTTTTGAACGCAAGTTCAGGACACACGGAGACGCGACTCTTGCCTCT
GTATGGACACATGTGTAGCATTCAGAGGTGGAGAGAAGTGGTCGACTGTT
TGAGCTTTTGTTTCTTGTCTTGACCGGGGTGCCCCAGTCTGTCAGGTACA
CCCTGTCGCAGCCATTCCTCCTGCCGTACAATGCTGACAAAAAAAAAAAA
GCGTATGCAAGTCGAACCTCCGTCGGCACCGAACAATTGCGCACAATCGC
GAAACTATATAATATGGTGGAGCATAATTTTCGAAATTTTCAAGAACCAG
GCGTACATGCTAAAAGAAAAGCAGTCACGCGAAGGCGCAACGGCCCCAAC
AGAGCGGCCGCCTGAACACTAGCACGAGAGCGCTGCCACTGAGTAAATAG
ACGCGAGGGCGCTCAAGCGCAGGAACACAACTGCTGTAGTTGATCAACTG
AAGGGTTTCATGAAAGGGAAGCGTACGTATGCATACACGTTCGTGTTCGT
CCTCTGCTGGTACGTGGCGGACAGGTACGTGGAATATACATTAAAGCACG
TTGCGAAGAAAATGCACGATGGTAACGTTTGTTTCCGCCGTCCGTGTGTG
CGGCTCGGTGGGGCGGGCTTGGCCCTGCTGTACTGGCTGCAGATACATAG
CATGTCTTCCAGTCGCGTGCACAATTCTCCCCCCTGTAGGCGGGGTTGTC
TCTTTCACATGTGTAGCGCCTACAAAACCCATCTCCAGATCCTGAAACCC
TACAATGTGTGCTGTTCTGCGTCCCCTACACCAAGCTAAGCGAAGCTTGA
TTTGGAGAGACAGATGCGGCACAAACCCTAAGCCCTCCGTCCGTGCTGTG
TATTTTCTTGGTTTGCTAGAAAAAAAAAAACAAACACAGAAAGACTGACA
ACCCGTTCGAGTTTATGATGTTATGGGTGGGTGTTGAGTTGGTGATGTTT
GTCCCCGTAAGTTGATGTATGCGTTCCATCCAACAACCGTCTCCTTCCGC
CGCTGCCGTCCCATGTCCCCTCCCCCGCTGCCTCCGCTCCCGCCAACACG
ATCGCAACAACGATGACGATGACGAACAGTATCGTACCCTCCAGAAGTAC
TGCAAGCTTCACGGCATCAACGTCCGCCCCGACTGCTCACAGGCCGAGCT
GGCCGTCGCTGCCGCCAGACATTTTCAGGTATACATCTCGTGGACATCGT
CAACTAGAAGTACATACCGTTCTCGTCGTCTCTTCCTTTGTGCTGCGTGC
TAGGGGTACAGTAAGAAATTCGAAAACGCCCTTTGTGTGCTAAAGGGGGG
GGAGTGGTGGTCTGGGAAAATCTTCCTGGCTCCGTGCCTCCTGTGTGTGA
GTTGTGAAGTTTTTTTTTTGGGCTGGGTTGTGGAGAGGAGAGATTGTTGG
GTACGGGGCAGTCTGGCGGGGCGGAGGCGGGAGAAAGAGAAGCAGCACGC
CCAAAGAATCGTAAGAGTGATGAACATGGTGTGTTTGGGCTCCCAGTGCC
ATGCTGCCGCTGTCTGCACTTTTCGTGCGTTCTTACCAGCCGGGAAAGGA
ACTTGAAATCAACCTTGGGAGTCTTACCAATCAACTACTAGCTAGGATCT
CATCCCGGAACCGTCGATCCGCGCACAAAAATCCGAAATCGCAGGAGGCA
CCTTCGGTGGACGAAGAGAATGTGATGGTGTCGTTCCTACAGAAGGTCAT
CGTTCCCGACCGGCCTTTCGAGCCCACCATCGACCTCGCCCTCGCCCGCA
TGGGAAGCCTTAGCGTCGACACGGCGGACCTCGGAGGTGGTGGAGGCAGC
GGCGGCGGAGGGCGGAGCTCGATGCCCAACGCCATGATGCACGACCACAT
GGACGACGGCATGAATGACGACATGGTGGACAGCATGGGAGGGGAGATGG
GGGTCGGCGGAGGGGGCCGGGGAGGTGTGCACGGCGGCAATGCCGGTGGT
GGCCATCATGGCGGCGGCTACGGCCGTCGCGGTGGTGGACACTCTTCTGC
AATGGGTGGAGGGATGGGGTACGACGAGAAGCCGCGGGCAGAGGGCTACT
CGTCCAGGGGAATGGGGGGGGNNNNN
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Coding sequence (CDS) from alignment at Scaffold_245:591095..594220-

>EsuBft927_3a-0001 ID=EsuBft927_3a-0001|Name=EsuBft927_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_245:591095..594220- (Ectocarpus subulatus male Bft15b)
ATGAACGGGTTGCGCGATACGGTCTCCCCAGGGCCGTACTTCCCCTTCCA
CCGAGACGAGACCTACCCCAGGACTCTCTGCGTGAACTTCAAGAGGCTAG
AGTATCGTACCCTCCAGAAGTACTGCAAGCTTCACGGCATCAACGTCCGC
CCCGACTGCTCACAGGCCGAGCTGGCCGTCGCTGCCGCCAGACATTTTCA
GGAGGCACCTTCGGTGGACGAAGAGAATGTGATGGTGTCGTTCCTACAGA
AGGTCATCGTTCCCGACCGGCCTTTCGAGCCCACCATCGACCTCGCCCTC
GCCCGCATGGGAAGCCTTAGCGTCGACACGGCGGACCTCGGAGGTGGTGG
AGGCAGCGGCGGCGGAGGGCGGAGCTCGATGCCCAACGCCATGATGCACG
ACCACATGGACGACGGCATGAATGACGACATGGTGGACAGCATGGGAGGG
GAGATGGGGGTCGGCGGAGGGGGCCGGGGAGGTGTGCACGGCGGCAATGC
CGGTGGTGGCCATCATGGCGGCGGCTACGGCCGTCGCGGTGGTGGACACT
CTTCTGCAATGGGTGGAGGGATGGGGTACGACGAGAAGCCGCGGGCAGAG
GGCTACTCGTCCAGGGGAATGGGGGGGGNNNNN
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