EsuBft927_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft927_14a-0001
Unique Name	EsuBft927_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:461333..465302 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	946362.XP_004987496.1
ProteomeId	EsuBft927_14
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	Coil
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	IPR013103
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	4
Max annot lvl	33154\|Opisthokonta
Length	1935
Hectar predicted targeting category	mitochondrion
Evalue	1.18e-14
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Encoded by
COG category	J

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft927_14a	EsuBft927_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 461333..465302 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_14a-0001	EsuBft927_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 461333..464924 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_14a-0001-exon	agat-exon-37145	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 461333..461413 +
EsuBft927_14a-0001-exon	agat-exon-37146	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 461458..462035 +
EsuBft927_14a-0001-exon	agat-exon-37144	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 463555..463607 +
EsuBft927_14a-0001-exon	EsuBft927_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 464080..465302 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_14a-0001-cds	EsuBft927_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 461333..461413 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft927_14a-0001-exon	agat-three_prime_utr-23135	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 464925..465302 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:461333..465302+
coding sequence from alignment at Scaffold_245:461333..465302+

spliced messenger RNA

>EsuBft927_14a-0001 ID=EsuBft927_14a-0001|Name=EsuBft927_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1935bp|location=Sequence derived from alignment at Scaffold_245:461333..465302+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGCAAGCCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATT
CGTCTTCCCCCTGGGTGCGGTGCGCTTTCCGGCGTCCCGCACATGGCATC
ATCACTTGATGCGTGGCATGAAGAGTCTTGGTTTCGAGCCTTGTGCCGCC
GATGCGTGTGTGATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGT
TATGATCCACGTAGACGACATCTTCTCTATCGGGCTCAAGAGCAGGTGCG
ATCAATTTGGTGTTGACCTCAACCGGTATGTGCCCATTTCCAACTTTGGG
GAACTGCGCTGGTATGCGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGG
GACGGTGACTATTTCGCAACAGGCTGTAGCGGAGAAGATCGTTGCCAAGT
TCGGTGTGACGACGGACAAAGAGACACCTATGGTCGTTGGGTTGAAGCTT
GAGCAGTACGACGCCGACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCT
AGTGGGACACTTGATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCA
ACGCGGTACGTGCCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGAGC
CGCCTCCCAGTCTGGGAGGCGGCTTTGCATGTTTTGATGTATGTTAGGTT
CACGAGCGGGGGGGCTGTTTGGGGTGCTCGGCAGAGTATACTGTCTACGG
GGCCTCCGGGGGGTCGCAAAGACTGGGGTGACTCCTCCAGCGACTCTGCA
ACGGAAGACAGAAAGAGGTCAAGAGAAGAGCTCGTGACCCTGAGGACGCA
AGTTAGCTCGCTGATGGATGAGATGAGCCAGCTAATGTCGCTAGTGGAAG
ATACCATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGT
GCCGCTGATCGCGGCGATACTAGGGAGAGCGCCGCCGCGGAGTCCACGAA
CGCCGAAGGAGGGGCTCCGTGGACCGGGAGTGCGCAGGACGGGAAGTACC
TGCGCGAACCTGTTCGAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAA
GCAGGGGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCA
AGATTATAGTCGTGCCATGGGAGATGGTGCTGCTGCTGTTGGCTTTGGAT
ACGGAGCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCT
CCTCCGTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTT
CCGCATGGCAGCTAATGGCGCAAACCTGTTGGAACAATTTGAAGAGAGCG
GGAGCTTGGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCA
CAGCAGTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTT
CCTGTCTCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAG
AGACGCCCCAGGGAGCGCTTTGTGAGCTCAAGACCATACACGACCCTGAA
TCATCTGTACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGAT
CTCTTGAGGTGAAAACCCCCAAAACGCCCTACATGAGATGCTCCAAACCG
CAAAGTCCTTAGACTAACCGAGAAAAGACTAACTGTCAACGAAACGTTCG
TCCTTCACCTCTTCTTGGATGCCCTTTCGGACGAGTATGCCATGACAAAG
CACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGA
AGTAATGATCGAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAG
GAAGCGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGC
CGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGG
CGGCGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCG

protein sequence of EsuBft927_14a-0001

>EsuBft927_14 ID=EsuBft927_14|Name=EsuBft927_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=518bp
MPSKPLSNQNWMRLCSFVFPLGAVRFPASRTWHHHLMRGMKSLGFEPCAA
DACVMRLIESGVVTMVVMIHVDDIFSIGLKSRCDQFGVDLNRYVPISNFG
ELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKL
EQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLS
RLPVWEAALHVLMYVRFTSGGAVWGARQSILSTGPPGGRKDWGDSSSDSA
TEDRKRSREELVTLRTQVSSLMDEMSQLMSLVEDTMKASKKEEPAGTMEG
AADRGDTRESAAAESTNAEGGAPWTGSAQDGKYLREPVRESGPSGRHSGE
AGGFVPQEVRVAAAHNQDYSRAMGDGAAAVGFGYGATTPATGYQSVRYTS
PPFSGKSKDFNEWLNDFRMAANGANLLEQFEESGSLEIPVNSGKSKFSLS
QQYRSEQVELAFHAWNFLSHALKEKDRKIMKRAETPQGALCELKTIHDPE
SSVQPSEDLKSLTSTKIS

mRNA from alignment at Scaffold_245:461333..465302+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft927_14a-0001 ID=EsuBft927_14a-0001|Name=EsuBft927_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3970bp|location=Sequence derived from alignment at Scaffold_245:461333..465302+ (Ectocarpus subulatus male Bft15b)
ATGCCGAGCAAGCCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATT
CGTCTTCCCCCTGGGTGCGGTGCGCTTTCCGGTAAGGTCGTGCGGTTGAG
ACGGAGCCTATACGGTCTGAAGCAGGCGTCCCGCACATGGCATCATCACT
TGATGCGTGGCATGAAGAGTCTTGGTTTCGAGCCTTGTGCCGCCGATGCG
TGTGTGATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTATGAT
CCACGTAGACGACATCTTCTCTATCGGGCTCAAGAGCAGGTGCGATCAAT
TTGGTGTTGACCTCAACCGGTATGTGCCCATTTCCAACTTTGGGGAACTG
CGCTGGTATGCGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGGGACGGT
GACTATTTCGCAACAGGCTGTAGCGGAGAAGATCGTTGCCAAGTTCGGTG
TGACGACGGACAAAGAGACACCTATGGTCGTTGGGTTGAAGCTTGAGCAG
TACGACGCCGACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGG
ACACTTGATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCAACGCGG
TACGTGCCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGAGCCGCCTC
CCAGTCTGGGAGGCGGCTTTGCATGTTTTGATGTATGTTAGGTTCACGAG
CGGGTACGGAATTACTTTTCAGAGGGGCACGGTGGGAGGAGACCACATGG
AACTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTGGATGTCGGAGAGAGGGTTTGGCATGTTCTTGTA
GTTTGAACTGGCCATTGAGGTGAAGCATGAATATTTATCTGAGGAATGAA
TTTGTTCTGAGAAGTCAGGACGTAAGACACGTTTTCCCGGAGTTACCCGT
CCTCCCCGTTCTGACGTGATTCTGATGGAACGTTGATCTTTTTGCCGGGT
ATTTTCCAAGGGTGATTGTTCGTGTTTTGACTGCTTGAGAATTGGGTAGA
GCACTTTTCTCGAGAGGGTGATTTGTTTTTCTTGACAGACCTTTTAGGGG
TAGAAATTTGACATCAAAAAGGTTTGAAAGCTTTGCAGGACGTGTTCTGT
TGGAAGATCCGGCGATTTCGTGGGACGTGTTCTATTGGCAGACAGAGTCG
TTTGGATTGGAATGGTGGATGATTTATTGTTAGCATAGGGGTTTTGGTTT
TTCTGTCTGCCGTTTCGTCTGGCAATGATAGTCGTGCCGGGGATTTCGTA
GATAGTATCTCGTACCGAGCAGGGGGGCTGTTTGGGGTGCTCGGCAGAGT
ATACTGTCTACGGGGCCTCCGGGGGGTACGCGGATGGAATGTATTGACAG
ACATGCTGCATGGCGATGGTGTGGCCTACCGCGTGTCTCTTACTCTCTAA
GCAACAAGGTCTTGAGTCAACCTTTTTTCTCTTTCGGCCTCTGACGAGCT
ACCGCACCCAAACAGAACCAAACGAAATGATCGACGGACACCGCGAAACA
TTAATAGGAGTTTCCAATTATCTATGCACAGCAGTGTTCCGTTCCAACTG
TTCGTGTGTTTGGATACGGACTGGTTAGATCTACCGGCAACAACAGAGGG
CACGCAGATGGGGCATATGTACACCTTGAAATGGTTGCATGTGCGGGGAC
CCCTCGAACTCCAAAGAGGGCTTCACTTCTCCCTACTCCCCTTGCGTGTC
TAATACAAAAAATAAAACGTCTTCCCCTTCCAAGTAAAGGACATATACGA
ATACACTAGTGGCTGTCCCTCGAGGGAGAGTCCATTAGGAATGTCAGGTC
GCAAAGACTGGGGTGACTCCTCCAGCGACTCTGCAACGGAAGACAGAAAG
AGGTCAAGAGAAGAGCTCGTGACCCTGAGGACGCAAGTTAGCTCGCTGAT
GGATGAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACCATGAAGGCAA
GCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGCTGATCGCGGC
GATACTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGC
TCCGTGGACCGGGAGTGCGCAGGACGGGAAGTACCTGCGCGAACCTGTTC
GAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGGCTTTGTC
CCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATTATAGTCGTGC
CATGGGAGATGGTGCTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCC
CAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCCGTTCAGCGGG
AAATCGAAAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCTAA
TGGCGCAAACCTGTTGGAACAATTTGAAGAGAGCGGGAGCTTGGAGATCC
CCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGC
GAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGTCTCACGCGTT
GAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCCCCAGGGAG
CGCTTTGTGAGCTCAAGACCATACACGACCCTGAATCATCTGTACAGCCG
TCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTTGAGGTGAAAA
CCCCCAAAACGCCCTACATGAGATGCTCCAAACCGCAAAGTCCTTAGACT
AACCGAGAAAAGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCT
TGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGACAC
GCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGATCGAATA
CAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAGCGGGGCGAAGG
GCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCGGTAC
TCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCCG
CAGCAGCAGTCGTGGCCGCG

Coding sequence (CDS) from alignment at Scaffold_245:461333..465302+

>EsuBft927_14a-0001 ID=EsuBft927_14a-0001|Name=EsuBft927_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1557bp|location=Sequence derived from alignment at Scaffold_245:461333..465302+ (Ectocarpus subulatus male Bft15b)
ATGCCGAGCAAGCCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATT
CGTCTTCCCCCTGGGTGCGGTGCGCTTTCCGGCGTCCCGCACATGGCATC
ATCACTTGATGCGTGGCATGAAGAGTCTTGGTTTCGAGCCTTGTGCCGCC
GATGCGTGTGTGATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGT
TATGATCCACGTAGACGACATCTTCTCTATCGGGCTCAAGAGCAGGTGCG
ATCAATTTGGTGTTGACCTCAACCGGTATGTGCCCATTTCCAACTTTGGG
GAACTGCGCTGGTATGCGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGG
GACGGTGACTATTTCGCAACAGGCTGTAGCGGAGAAGATCGTTGCCAAGT
TCGGTGTGACGACGGACAAAGAGACACCTATGGTCGTTGGGTTGAAGCTT
GAGCAGTACGACGCCGACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCT
AGTGGGACACTTGATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCA
ACGCGGTACGTGCCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGAGC
CGCCTCCCAGTCTGGGAGGCGGCTTTGCATGTTTTGATGTATGTTAGGTT
CACGAGCGGGGGGGCTGTTTGGGGTGCTCGGCAGAGTATACTGTCTACGG
GGCCTCCGGGGGGTCGCAAAGACTGGGGTGACTCCTCCAGCGACTCTGCA
ACGGAAGACAGAAAGAGGTCAAGAGAAGAGCTCGTGACCCTGAGGACGCA
AGTTAGCTCGCTGATGGATGAGATGAGCCAGCTAATGTCGCTAGTGGAAG
ATACCATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGT
GCCGCTGATCGCGGCGATACTAGGGAGAGCGCCGCCGCGGAGTCCACGAA
CGCCGAAGGAGGGGCTCCGTGGACCGGGAGTGCGCAGGACGGGAAGTACC
TGCGCGAACCTGTTCGAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAA
GCAGGGGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCA
AGATTATAGTCGTGCCATGGGAGATGGTGCTGCTGCTGTTGGCTTTGGAT
ACGGAGCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCT
CCTCCGTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTT
CCGCATGGCAGCTAATGGCGCAAACCTGTTGGAACAATTTGAAGAGAGCG
GGAGCTTGGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCA
CAGCAGTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTT
CCTGTCTCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAG
AGACGCCCCAGGGAGCGCTTTGTGAGCTCAAGACCATACACGACCCTGAA
TCATCTGTACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGAT
CTCTTGA