EsuBft927_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft927_13a-0001
Unique NameEsuBft927_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_245contigScaffold_245:466500..469349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7070.TC015470-PA
ProteomeIdEsuBft927_13
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1519
Hectar predicted targeting categoryother localisation
Evalue3.03e-12
EggNOG OGsCOG2801@1|root,KOG1922@1|root,KOG0017@2759|Eukaryota,KOG1922@2759|Eukaryota,38C7D@33154|Opisthokonta,3BDNK@33208|Metazoa,3CX9J@33213|Bilateria,41VES@6656|Arthropoda,3SHX8@50557|Insecta
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameFHDC1
GOsGO:0001763,GO:0002009,GO:0002064,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0007275,GO:0007424,GO:0008092,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0015629,GO:0030154,GO:0030855,GO:0031110,GO:0031113,GO:0031941,GO:0032092,GO:0032271,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033043,GO:0035146,GO:0035147,GO:0035150,GO:0035239,GO:0035295,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043393,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048468,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051128,GO:0051493,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0090066,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902903,GO:1904529,GO:1904531,GO:1904616,GO:1904618
DescriptionActin binding. It is involved in the biological process described with cellular component organization
COG categoryTZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft927_13aEsuBft927_13aEctocarpus subulatus male Bft15bgeneScaffold_245 466500..469349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_13a-0001EsuBft927_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_245 466500..467753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_13a-0001-exonEsuBft927_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_245 466500..466618 +
EsuBft927_13a-0001-exonagat-exon-37141Ectocarpus subulatus male Bft15bexonScaffold_245 466712..467525 +
EsuBft927_13a-0001-exonagat-exon-37142Ectocarpus subulatus male Bft15bexonScaffold_245 467625..467977 +
EsuBft927_13a-0001-exonagat-exon-37143Ectocarpus subulatus male Bft15bexonScaffold_245 469117..469349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_13a-0001-cdsEsuBft927_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_245 466500..466618 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft927_13a-0001-exonagat-three_prime_utr-23133Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 467754..467977 +
EsuBft927_13a-0001-exonagat-three_prime_utr-23134Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_245 469117..469349 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft927_13a-0001 ID=EsuBft927_13a-0001|Name=EsuBft927_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1519bp|location=Sequence derived from alignment at Scaffold_245:466500..469349+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGCGAGGAGGC
GCCGACGGCACCCGGCAACGGGATTCCGGGGGACGGAGGCAGCGTTCCCC
CCTCGCCCCCTTCGGGAAGTGACGCCGGCGGTGCCGGCGGCCCGGGCGGC
GAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGG
CGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCT
ACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCGAACGCT
GGCCCGCTGCGCCATGGGCTTGACAGTGGCCGCACGCGGAAGCAGACCCG
GGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACC
CGGAAGAGGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATT
GTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGA
GCAGACACGCCGTATGGAGGAGATGTACAGGCACGAGATGCAGGAGGTGT
TGGGCCCGGAACAGGAGGTGTTCGGGGCCGAGGTCGACGCCAGCGGGCCT
TCGCAATCACTCCCAGACCCACAGCTAAGGCCGAAGATAGATGACCAGCC
CGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGA
AGCTGACGAGGCCAGACATCGCCCTGCCTTTGAACAAGCTCGAGAAGATC
GCCCACTCACCCACCGGGAGGATATGGAACGCGCTTGTGCGGATCATGTC
CTACCTGAACTTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAG
GACTAGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTA
GACAGGCGTTCTACGACCGGGCTAGCTGTGACCGAGGCGCTGTTTGTGCG
TGGCATTCTGTCGTTCATAGCGCCCGAGACGAGAGGGGTGAAGATCAAGG
TCCTCGAGGACAACAAGGCGGCTCGCCTTAAGCGAGAACCCGTTCAGCTC
AGCAAAGAGTAAGCACATCGACGTGCTGTTCATTTCATTCGCGAGCTATT
CACGTCGGGCAAGATCACTGCAGAGTATGTTTCGACTGCAGAGCAGCACG
CCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAATTAGAGTACCACAGG
AAGGCTCTGATGAACCTACCGATGTAGTGTTCTCGTGTTCTGTTTGGTTT
ATGTGGTGGTTTTAGCACTTGGCATATATGACCATGAACTTCGCGAGGCC
GTCTTCGGCGCGAGAGAACAGATAGATTGAATGAATCTGCGGTGGAGCAA
ATCCACTTCATCCACTCGACCTTCAGTGTTGCGTCTCCTTGTACACAGTC
GCTGCAGCCAATCCTGCTGCTAGAAAGGCGCTTGGGCTGTAGGCCTACCC
TCCCCCCTGAGGGTGCGTTGATTATGTTCTCCCTCTTGCCTAGCTGGTAC
GCAACACATAGCGTGCATC
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protein sequence of EsuBft927_13a-0001

>EsuBft927_13 ID=EsuBft927_13|Name=EsuBft927_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=353bp
MEARGPGQATPFVREEAPTAPGNGIPGDGGSVPPSPPSGSDAGGAGGPGG
EESGDPGGDGGSDGDPGDSENLEELKYDPADDRYPRGLEGKKLLWGASNA
GPLRHGLDSGRTRKQTREMQGAGEMPGPGETPDPEEALLATILETGGTGI
VEDYICNSLVKEQWDEEQTRRMEEMYRHEMQEVLGPEQEVFGAEVDASGP
SQSLPDPQLRPKIDDQPAVDKPVREAIGCLMWTKLTRPDIALPLNKLEKI
AHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEV
DRRSTTGLAVTEALFVRGILSFIAPETRGVKIKVLEDNKAARLKREPVQL
SKE
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mRNA from alignment at Scaffold_245:466500..469349+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft927_13a-0001 ID=EsuBft927_13a-0001|Name=EsuBft927_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2850bp|location=Sequence derived from alignment at Scaffold_245:466500..469349+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGCGAGGAGGC
GCCGACGGCACCCGGCAACGGGATTCCGGGGGACGGAGGCAGCGTTCCCC
CCTCGCCCCCTTCGGGAAGGTGCGACTTCGGCGGAGGCGGTGACAGCCCC
ACCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCGAG
CAGCAGCAACAGTGACGCCGGCGGTGCCGGCGGCCCGGGCGGCGAAGAGT
CCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTCC
GAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCTACCCCCG
CGGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCGAACGCTGGCCCGC
TGCGCCATGGGCTTGACAGTGGCCGCACGCGGAAGCAGACCCGGGAGATG
CAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGA
GGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTTGAGG
ACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACA
CGCCGTATGGAGGAGATGTACAGGCACGAGATGCAGGAGGTGTTGGGCCC
GGAACAGGAGGTGTTCGGGGCCGAGGTCGACGCCAGCGGGCCTTCGCAAT
CACTCCCAGACCCACAGCTAAGGCCGAAGATAGATGACCAGCCCGCGGTG
GATAAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGAC
GAGGCCAGACATCGCCCTGCCTTTGAACAAGCTCGAGAAGATCGCCCACT
CACCCACCGGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTACCTG
AACTTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGA
CCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGC
GTTCTACGACCGGGCTAGCTGTGACCGTAGGTGGTACCGTAGTGTGTGCA
TCCACCAAGACGCAGCCAGTGACGGCTCAGTCGACCTCGGAAGCAGAGTA
TATGGCAGTCGGGGAGGGCATGAAGGAGGCGCTGTTTGTGCGTGGCATTC
TGTCGTTCATAGCGCCCGAGACGAGAGGGGTGAAGATCAAGGTCCTCGAG
GACAACAAGGCGGCTCGCCTTAAGCGAGAACCCGTTCAGCTCAGCAAAGA
GTAAGCACATCGACGTGCTGTTCATTTCATTCGCGAGCTATTCACGTCGG
GCAAGATCACTGCAGAGTATGTTTCGACTGCAGAGCAGCACGCCGACATG
CTGACCAAGGTCCTTGGCAGAGAGAAATTAGAGTACCACAGGAAGGCTCT
GATGAACCTACCGATGTAGTGTTCTCGTGTTCTGTTTGGTTTATGTGGTG
GTTTTAGCACTTGGCATATATGACCATGGTACGTCACGCAGGAAGCGTTG
TGCCGGCGCGTCACCCGCGGCTGGAGCCTAGAAACGCCGAGAGCGTTGCT
TCGGGTGTGTAATCAGCGTGACCGGTTCAATCTGTCCTGCCTTGGTCTTG
TCTTGGAAGTGCGGCCGTTGGAATCCTCCGTGATTGCGACGATTTTCTAT
ATTTAGGTGTTAGACGAGGGTTTTTGATCCGGTTGGCCGGGTTTTCCCTC
GAGCCTGTTGTTGTTTTGAGTCCCTTTGGTAGATCAGGGGTATCCATGCC
CCACGTTAGGTTTGCCATTCGCGTGCAAACCGGGGAGAGTGTTCGTGTGT
TTGGATACGGACTGGTTAGATCTACCGGCAACAACAGAGGGCACGCAGAT
GGGGCGTATGTACACCTTGAAATGGTTGCATATGCGGGGACCCCTCGAAC
TCCAACGAGGGCTTCACTTCTCCCTACTCCCCTTGCGTGTCTAATACAAG
AGATAAATCGTCTTCCCCTTCCAAGCAAAGGACATATACGAACACCCAAC
AGCCATATCGCACTTAGAACTTTAAACTACCCCAACTCCGAAAACCGCCT
TTTCGGAGTAAGTCTAGACCCGGGCCCCCCCGGGAGCGTACATACATCTG
GTTCCTTTTCCTTTTCCTCCTGCTTGTCCCGTTCATCCTCCTGCTCCTGC
TCCTGCTCCTCCTCTTTCTTCCTCCCCCTGCCCCCCTCCCTCTTCCTCGC
TGTCCTCTCCCCCTCCCTCGTCTTCACTGCCCCCTCCCTCTTCGCTGGAC
TCCGAGTCTTCTGTTACTGCTAATGCGGGCCAAGAACGTTTTTGACTAGT
AGTCTTGCGCCGTGCACCAGCGACAGACGTCCTGGCCCCCGGACCCTTAT
TCAGCTTTGCCATCACGTGGGATTTCTCTTTGCTCGCGTACATCGCAGCT
GGCTTTAAATCTCGCAGTATCGGGATCCATCCTTCTCTCTCATCATGGGC
GATTCCTCGCCGTGCTGCTCCTCCTGTACGTGGTAGGGCATGGAGTACTT
CCATACCAGAACCACCCAACGCTCGGGAAGGCAAAACATGCACTGCGGGA
CTTTGGTGCATCGCGTGGCGATGGAGCTTTCACCCGCTGTCTTCAGGCCT
ACTCCAACGAACGGCAGAACTTCGCGAGGCCGTCTTCGGCGCGAGAGAAC
AGATAGATTGAATGAATCTGCGGTGGAGCAAATCCACTTCATCCACTCGA
CCTTCAGTGTTGCGTCTCCTTGTACACAGTCGCTGCAGCCAATCCTGCTG
CTAGAAAGGCGCTTGGGCTGTAGGCCTACCCTCCCCCCTGAGGGTGCGTT
GATTATGTTCTCCCTCTTGCCTAGCTGGTACGCAACACATAGCGTGCATC
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Coding sequence (CDS) from alignment at Scaffold_245:466500..469349+

>EsuBft927_13a-0001 ID=EsuBft927_13a-0001|Name=EsuBft927_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1062bp|location=Sequence derived from alignment at Scaffold_245:466500..469349+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCGCGAGGAGGC
GCCGACGGCACCCGGCAACGGGATTCCGGGGGACGGAGGCAGCGTTCCCC
CCTCGCCCCCTTCGGGAAGTGACGCCGGCGGTGCCGGCGGCCCGGGCGGC
GAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCCGG
CGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCT
ACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCGAACGCT
GGCCCGCTGCGCCATGGGCTTGACAGTGGCCGCACGCGGAAGCAGACCCG
GGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACC
CGGAAGAGGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATT
GTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGA
GCAGACACGCCGTATGGAGGAGATGTACAGGCACGAGATGCAGGAGGTGT
TGGGCCCGGAACAGGAGGTGTTCGGGGCCGAGGTCGACGCCAGCGGGCCT
TCGCAATCACTCCCAGACCCACAGCTAAGGCCGAAGATAGATGACCAGCC
CGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGA
AGCTGACGAGGCCAGACATCGCCCTGCCTTTGAACAAGCTCGAGAAGATC
GCCCACTCACCCACCGGGAGGATATGGAACGCGCTTGTGCGGATCATGTC
CTACCTGAACTTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAG
GACTAGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTA
GACAGGCGTTCTACGACCGGGCTAGCTGTGACCGAGGCGCTGTTTGTGCG
TGGCATTCTGTCGTTCATAGCGCCCGAGACGAGAGGGGTGAAGATCAAGG
TCCTCGAGGACAACAAGGCGGCTCGCCTTAAGCGAGAACCCGTTCAGCTC
AGCAAAGAGTAA
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