EsuBft926_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft926_3a-0001
Unique NameEsuBft926_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_78contigScaffold_78:808190..810433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft926_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length95
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft926_3aEsuBft926_3aEctocarpus subulatus male Bft15bgeneScaffold_78 808190..810433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft926_3a-0001-exonagat-exon-88805Ectocarpus subulatus male Bft15bexonScaffold_78 808190..808884 -
EsuBft926_3a-0001-exonEsuBft926_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_78 810177..810433 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft926_3a-0001-exonagat-three_prime_utr-23126Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_78 808190..808237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft926_3a-0001-cdsEsuBft926_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_78 808238..808884 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft926_3a-0001-exonagat-five_prime_utr-15036Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_78 810223..810433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft926_3a-0001EsuBft926_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_78 808238..810222 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft926_3a-0001 ID=EsuBft926_3a-0001|Name=EsuBft926_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=952bp|location=Sequence derived from alignment at Scaffold_78:808190..810433- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCACGTGCATCACAAGAGATTGCCCTTTTTAGCCGCTTTCGAGAAGTGT
ATATTGCTAGCACACTTGAAGCCCTCCATCTTCCTGTGCCTCCAAGAGCG
GGTGGATCAAACGCCGTGAATCGCCCGTTTGTGTGGGAGCACATATTTCT
TCGTCCTTGTCGAGCTGGGCTAACTGCCGCGATCCGCAGTAGCTAAAAAG
CTGTATCCACCATGACCACCATGGCACCAGCACCGAGGACCTTCAAGATC
TATCGTGATGCTGCCATTGAGACGATCCACGCTACTCCCGCCGTACACGA
AGCGGCGGCGGCAACCCCGTGTTCTTCGCCCGTGTCTCTGAGGCCAGTGC
CCAGTTCTACGACTACGACGGCTGCGCGCGCCACCGCCACTGCCACAGTT
TCTGCCCCCGCGCGCTTGCCGCCGAGGAAACGTAGCAGACTGCAGCAGCA
GCAGCAGTCGCGGCCGCTGGGTTCGTTGCCGAGCCCGAGTGGTGGCAGCG
GCCCCGCAGGCGGCAGTAGCAGCAATACGAGCGGTTGGTGGGACGTGTCG
AACAAGGAGAACATCGATCCTGGAACCGGGAAGCAGCAGCAGCGGCAGCA
GCAACAACAGAGAGTTTCGCCCTTCTCCACTATGCTGCCAGTAGGCGACT
CCTCCGCTTGCTCCGCAGTGCATCCGCACTGCTTGGGCAGTAGCACCTCC
AAGAAGCGCCCCTTGTGCGGCGATGAGCGGTGCTGCGCGAGTGCTATTGA
CAACGGCGGTGATGGTGCTGGGAAGCCGGTTGCATTGTCGTCGCGTAAGC
CGTCTAGGGAGCCGCTGAAAGAGCTCTGGAACAGGAGCAGCTACGGCGGT
AAATTGTCCTTTCCCGTTTACCTGAACGCTCTCGGCGCCCGCACCTTGCG
GTGATGTTCAGTGGCTTCGGCTTTTGAGGAGGATGGCGGGAAAGAGGAAG
AT
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protein sequence of EsuBft926_3a-0001

>EsuBft926_3 ID=EsuBft926_3|Name=EsuBft926_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MTTMAPAPRTFKIYRDAAIETIHATPAVHEAAAATPCSSPVSLRPVPSST
TTTAARATATATVSAPARLPPRKRSRLQQQQQSRPLGSLPSPSGGSGPAG
GSSSNTSGWWDVSNKENIDPGTGKQQQRQQQQQRVSPFSTMLPVGDSSAC
SAVHPHCLGSSTSKKRPLCGDERCCASAIDNGGDGAGKPVALSSRKPSRE
PLKELWNRSSYGGKLSFPVYLNALGARTLR
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mRNA from alignment at Scaffold_78:808190..810433-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft926_3a-0001 ID=EsuBft926_3a-0001|Name=EsuBft926_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2244bp|location=Sequence derived from alignment at Scaffold_78:808190..810433- (Ectocarpus subulatus male Bft15b)
GCCACGTGCATCACAAGAGATTGCCCTTTTTAGCCGCTTTCGAGAAGTGT
ATATTGCTAGCACACTTGAAGCCCTCCATCTTCCTGTGCCTCCAAGAGCG
GGTGGATCAAACGCCGTGAATCGCCCGTTTGTGTGGGAGCACATATTTCT
TCGTCCTTGTCGAGCTGGGCTAACTGCCGCGATCCGCAGTAGCTAAAAAG
CTGTATCCACCATGACCACCATGGCACCAGCACCGAGGACCTTCAAGATC
TATCGTGGTGAGAAAGGCTGAGCAGTCTTGAGCAATGTGAGGTTCACGCC
TTCTTCTTTTAGGAAGTTCACAAGAGTCTCACCTGGTGCGTAGGCTACTC
CCTCGCGTGCCTGGTCTTGTTCAAAAAGGGGGCCATAATCCGTTGGGACT
CCAGCTTGCTTTGAGCGATGCTACCTCGCCCGGTTGACGTGTGTCATGCC
CAGTCTCCAAAACGCTGCACCGGGCCGCTCGCTTTGTCTGGATCTCGACC
TAACGCGCTTTTATCTCTGTACCTCCACCTACGCTAAACGCAACAACGAC
CTTTGTGCACGCTGCTCTGCAACCAACCGCTGGTGCTGTCATTTTTTGAA
ATCCGACCGGTGCCGCCGATGATTTTCAAAACACCAGTATCAAACGCCTT
CGAAACTTCATGACATAACCCCGTTTTTCGTTGGGCCACGGGTGCACACC
ACCCATGATTGACGCACACGAGGAGCACATGAGACTGCTTGCACGTACAT
GCCGCGATGGACGCCTGCTGGCCGCCATTCCCATTTCTCGGCAACCAACG
TTGAGGCCATCGATGGAACATGCTGCCGGCTTCCCGAAAAAAAAAGCGGG
GTTGGGAGGTTTGAAATTTGAAATTTCTTCACGTAGAGAATGCAGGGAAA
TGCATATGCACGTTTCGGTGTCCTGGTCTCTACGCTCACGCCTGGCCACC
GTTCCGGCCACGCCTCACTTGTTCGTTGAAGAGGACGGCCGACAGCAACA
GCAGTGGCAGCGGGAGTTGCCGCATCCTGGCATGAAAAGCTGCCTCGCAA
CTCTTTTCGGTTCCGGTGACACTCTATTTTTCCGGCCAACGTCACGTGCT
CTCCCTGCCCTTTGTCATCTGCTTCGTTGCAAGTTGCAAAGCATTTTAGT
CCGGCCGCCGGGTAGGTCAAAGGCAGCAGGCTACCACTCCCACACGTGAT
TGGTAAAATCTGGTTTAGCCACGATTGCGCTTAGCGCCCTTACTGTTTGC
ACCCACGCATTTCGTCGGTGACAGACAGACGCCCCGGGCGGGCCTCCCAC
GGTTAGAAACAACGTCTTGGGATTGAAGAATCTCGAATGGGTAGTCGTTC
TTTGCGTGTATTTATTTTTCCTTAATTAAAGAATCCGAACTTCAAAGTTC
GAACGTGTTAGATTTGCAGCAGTCACCACACCCCGAGCTAGTGTTCACCG
CCCACTGCTGTTCCCCCCGGCCTGATTGTGTGTGTCGTGGCTCATTCTTT
TCCTACCTCTTCCCCCCCTCTGCTCACTGCTGTTGTGCTGCAATTGCAGA
TGCTGCCATTGAGACGATCCACGCTACTCCCGCCGTACACGAAGCGGCGG
CGGCAACCCCGTGTTCTTCGCCCGTGTCTCTGAGGCCAGTGCCCAGTTCT
ACGACTACGACGGCTGCGCGCGCCACCGCCACTGCCACAGTTTCTGCCCC
CGCGCGCTTGCCGCCGAGGAAACGTAGCAGACTGCAGCAGCAGCAGCAGT
CGCGGCCGCTGGGTTCGTTGCCGAGCCCGAGTGGTGGCAGCGGCCCCGCA
GGCGGCAGTAGCAGCAATACGAGCGGTTGGTGGGACGTGTCGAACAAGGA
GAACATCGATCCTGGAACCGGGAAGCAGCAGCAGCGGCAGCAGCAACAAC
AGAGAGTTTCGCCCTTCTCCACTATGCTGCCAGTAGGCGACTCCTCCGCT
TGCTCCGCAGTGCATCCGCACTGCTTGGGCAGTAGCACCTCCAAGAAGCG
CCCCTTGTGCGGCGATGAGCGGTGCTGCGCGAGTGCTATTGACAACGGCG
GTGATGGTGCTGGGAAGCCGGTTGCATTGTCGTCGCGTAAGCCGTCTAGG
GAGCCGCTGAAAGAGCTCTGGAACAGGAGCAGCTACGGCGGTAAATTGTC
CTTTCCCGTTTACCTGAACGCTCTCGGCGCCCGCACCTTGCGGTGATGTT
CAGTGGCTTCGGCTTTTGAGGAGGATGGCGGGAAAGAGGAAGAT
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Coding sequence (CDS) from alignment at Scaffold_78:808190..810433-

>EsuBft926_3a-0001 ID=EsuBft926_3a-0001|Name=EsuBft926_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_78:808190..810433- (Ectocarpus subulatus male Bft15b)
ATGACCACCATGGCACCAGCACCGAGGACCTTCAAGATCTATCGTGATGC
TGCCATTGAGACGATCCACGCTACTCCCGCCGTACACGAAGCGGCGGCGG
CAACCCCGTGTTCTTCGCCCGTGTCTCTGAGGCCAGTGCCCAGTTCTACG
ACTACGACGGCTGCGCGCGCCACCGCCACTGCCACAGTTTCTGCCCCCGC
GCGCTTGCCGCCGAGGAAACGTAGCAGACTGCAGCAGCAGCAGCAGTCGC
GGCCGCTGGGTTCGTTGCCGAGCCCGAGTGGTGGCAGCGGCCCCGCAGGC
GGCAGTAGCAGCAATACGAGCGGTTGGTGGGACGTGTCGAACAAGGAGAA
CATCGATCCTGGAACCGGGAAGCAGCAGCAGCGGCAGCAGCAACAACAGA
GAGTTTCGCCCTTCTCCACTATGCTGCCAGTAGGCGACTCCTCCGCTTGC
TCCGCAGTGCATCCGCACTGCTTGGGCAGTAGCACCTCCAAGAAGCGCCC
CTTGTGCGGCGATGAGCGGTGCTGCGCGAGTGCTATTGACAACGGCGGTG
ATGGTGCTGGGAAGCCGGTTGCATTGTCGTCGCGTAAGCCGTCTAGGGAG
CCGCTGAAAGAGCTCTGGAACAGGAGCAGCTACGGCGGTAAATTGTCCTT
TCCCGTTTACCTGAACGCTCTCGGCGCCCGCACCTTGCGGTGA
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