EsuBft925_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft925_9a-0001
Unique NameEsuBft925_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_491contigScaffold_491:481256..483166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft925_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length123
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft925_9aEsuBft925_9aEctocarpus subulatus male Bft15bgeneScaffold_491 481256..483166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_9a-0001-exonEsuBft925_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_491 481256..482427 -
EsuBft925_9a-0001-exonagat-exon-45101Ectocarpus subulatus male Bft15bexonScaffold_491 483104..483166 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_9a-0001-exonagat-three_prime_utr-23124Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 481256..482381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_9a-0001-cdsEsuBft925_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_491 482382..482427 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_9a-0001-exonagat-five_prime_utr-15035Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_491 483139..483166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_9a-0001EsuBft925_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_491 482382..483138 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft925_9a-0001 ID=EsuBft925_9a-0001|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1235bp|location=Sequence derived from alignment at Scaffold_491:481256..483166- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCGCCAATGGCACCACGCAGCCATGGAGGGTGCCGGAATGAGTT
CGATGGAAGGCAAGCCTCCGGACGACATCAATAAGTGGAATAACAAAGGC
CGGGGTTAGGACGGTTGGGTTCGACTCCCCTCCAATCCAACCTAGCAAAG
ACAATGCCTGGCCGACGCGTCCTTTTTATACCGCTCCGTTTGGTGCCGGC
TGGGCGTCTACCATGCTGTTTCCCACCTTGTGCATTGCCGCTAGCCACAG
TTATGACGGTCTTGCCGTAGGCGAGCTGCTTTGCCTTGATGCTGTGCCTC
TTGTTGCAAAGAGTGCTGTAGTACATGGTAGATCGCGATTGATCGTCTTT
GTGCCGGTTTCGTCTCAGCCAACGATTCCCACTCTGCTGCAAAGGCGCCA
ACCGATGAAATATTGTCGTGCGTTCCATTTCATTCCGTCATTTGGCAGTA
TCACGTCGATGTGGGGAAATGTTTCAGAGACTAAGGCTTACACCCTTTTT
CGGGAACGACTGTGTTTTCAACACGAAACGAGTCGAGGTATTCCCAAAGA
CCGGACTTGCGGGTTACAAGTTTGGAAGGGTTCGAGCCCATGGAAGGGCC
TGTCGGTTGAATCGGAATATGTTATCGTTGATTTATGGCGACCTCTTCAA
TCTTGTCGACCTCCCCTCTGTCTCGTTTAGTTCTTCCTATGTTGACCCGG
CTTGCCCTTAGGCTTGGCGACGAACTCCACGCGATGGGGGGCCAAGTGGG
TGACCGTGACGGTTGACTTGGGGTGCTTCCGCGATCAGCTGTTTCGTGGT
TTGTTTAGTCTATTGTTGTGGTGGATGAAGCACAACAGCAGGAAGGGAGA
GAAGGGGAGGGGATGTGCAGCTGATGGTGTTTTTTTGTGTGATTACATTC
CGCTGAGCTTGGCACAATCATCATAACCCCGTGAAGGTTGACCCTCAAGA
GCGTACGACCTTACTGTGGATGTTCTCGTCGCGTGGTACAAGTTGTACAT
GTCTGCGTCGAAGGGTAGTCCAAATACACTATGCGACAGAGAGGAAGTGT
TGCAGAATGGTGTATGCGACAACGTTGAAGAAGGAGAGCTGTCGGAGTAA
CCCGGAAGGCAGTCCGAGTAGTGGGGTCTTGCTCCTTTCATGCAAAATCC
ATCTCATATCGAGGCCTGCGGCCGCGCGACTATCCTTGGAGGAAAGAACG
ATAAGCAGGACACCAGAAATTTCTTTATTTGATAA
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protein sequence of EsuBft925_9a-0001

>EsuBft925_9 ID=EsuBft925_9|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=26bp
MEGAGMSSMEGKPPDDINKWNNKGRG
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mRNA from alignment at Scaffold_491:481256..483166-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft925_9a-0001 ID=EsuBft925_9a-0001|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1911bp|location=Sequence derived from alignment at Scaffold_491:481256..483166- (Ectocarpus subulatus male Bft15b)
ATGACTCCGCCAATGGCACCACGCAGCCATGGAGGGTGCCGGAATGAGTT
CGATGGAAGGCAAGTGGGAACTAACGGATGCTGGTGCCTTCTTGCGCAGG
GCAAGCATATCCGCAGACTTTATTTGGAGAACGGAGGACATGTTTGTGTC
TCGGCCATACATATTTTGTCATCTCCATGCTACCACTTCTGCGGTCTTGT
GTCGAGCGCTGGGGTATCCCGGGCTCTAGCACTGATTAATGGGTTTCAAA
TACAGTGGGGGTCCCCCTTTAGTGCAAATTGAAATTGCCAATGCCCGGTA
CAGTGCTGGTGTTTCGGCGCCCACACTGAATTGCCTGGTCATTGTCAGCG
CTTTGAACGGTGCCGGTCCGTTATAGTGCCCGTGAATTTTCTGGGCACAT
ACCGGCGGTAAACAGAGACCCCCACTGTGCTGTGTACGTGTTCAGCTTGC
GATGAGTTGAAAGACGGCACATGGCAAGACTAACGGAGGCAGCCAAAATA
ATGTTTGCACCATCTGTATTTTGTGTACAATGAACTGGCGTAAGTTTGAA
CAGATAGTGCCGAAGAATGGAAACGCCTGAACGTGTTCTTGTTAGCCAAA
CCTTCCGACTCGCTCGAGGCTATCGATCGGTGTTGATACAATCTCAGGTT
TCCTCTCATCGCCGTCCCCCTCCAAACCTGGTGCGTTCACCGCGATTATT
CCGCCGCCGTCTCCGGCCTGGTTGACCGGCACCGAGAAGGCCTCCGGACG
ACATCAATAAGTGGAATAACAAAGGCCGGGGTTAGGACGGTTGGGTTCGA
CTCCCCTCCAATCCAACCTAGCAAAGACAATGCCTGGCCGACGCGTCCTT
TTTATACCGCTCCGTTTGGTGCCGGCTGGGCGTCTACCATGCTGTTTCCC
ACCTTGTGCATTGCCGCTAGCCACAGTTATGACGGTCTTGCCGTAGGCGA
GCTGCTTTGCCTTGATGCTGTGCCTCTTGTTGCAAAGAGTGCTGTAGTAC
ATGGTAGATCGCGATTGATCGTCTTTGTGCCGGTTTCGTCTCAGCCAACG
ATTCCCACTCTGCTGCAAAGGCGCCAACCGATGAAATATTGTCGTGCGTT
CCATTTCATTCCGTCATTTGGCAGTATCACGTCGATGTGGGGAAATGTTT
CAGAGACTAAGGCTTACACCCTTTTTCGGGAACGACTGTGTTTTCAACAC
GAAACGAGTCGAGGTATTCCCAAAGACCGGACTTGCGGGTTACAAGTTTG
GAAGGGTTCGAGCCCATGGAAGGGCCTGTCGGTTGAATCGGAATATGTTA
TCGTTGATTTATGGCGACCTCTTCAATCTTGTCGACCTCCCCTCTGTCTC
GTTTAGTTCTTCCTATGTTGACCCGGCTTGCCCTTAGGCTTGGCGACGAA
CTCCACGCGATGGGGGGCCAAGTGGGTGACCGTGACGGTTGACTTGGGGT
GCTTCCGCGATCAGCTGTTTCGTGGTTTGTTTAGTCTATTGTTGTGGTGG
ATGAAGCACAACAGCAGGAAGGGAGAGAAGGGGAGGGGATGTGCAGCTGA
TGGTGTTTTTTTGTGTGATTACATTCCGCTGAGCTTGGCACAATCATCAT
AACCCCGTGAAGGTTGACCCTCAAGAGCGTACGACCTTACTGTGGATGTT
CTCGTCGCGTGGTACAAGTTGTACATGTCTGCGTCGAAGGGTAGTCCAAA
TACACTATGCGACAGAGAGGAAGTGTTGCAGAATGGTGTATGCGACAACG
TTGAAGAAGGAGAGCTGTCGGAGTAACCCGGAAGGCAGTCCGAGTAGTGG
GGTCTTGCTCCTTTCATGCAAAATCCATCTCATATCGAGGCCTGCGGCCG
CGCGACTATCCTTGGAGGAAAGAACGATAAGCAGGACACCAGAAATTTCT
TTATTTGATAA
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Coding sequence (CDS) from alignment at Scaffold_491:481256..483166-

>EsuBft925_9a-0001 ID=EsuBft925_9a-0001|Name=EsuBft925_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=81bp|location=Sequence derived from alignment at Scaffold_491:481256..483166- (Ectocarpus subulatus male Bft15b)
ATGGAGGGTGCCGGAATGAGTTCGATGGAAGGCAAGCCTCCGGACGACAT
CAATAAGTGGAATAACAAAGGCCGGGGTTAG
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