EsuBft925_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft925_8a-0001
Unique NameEsuBft925_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_491contigScaffold_491:488644..489513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft925_8
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length38
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft925_8aEsuBft925_8aEctocarpus subulatus male Bft15bgeneScaffold_491 488644..489513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_8a-0001-exonagat-exon-45100Ectocarpus subulatus male Bft15bexonScaffold_491 488644..488652 +
EsuBft925_8a-0001-exonEsuBft925_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_491 489142..489513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_8a-0001-cdsEsuBft925_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_491 488644..488652 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_8a-0001-exonagat-three_prime_utr-23123Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 489292..489513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_8a-0001EsuBft925_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_491 488644..489291 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft925_8a-0001 ID=EsuBft925_8a-0001|Name=EsuBft925_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=381bp|location=Sequence derived from alignment at Scaffold_491:488644..489513+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGAGACGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGACGCATTGAGTGAAGAAAGCTGCATACTGAAACCT
CACAGGTTGATTTGTATTGGAGATTGCCGGACACATAGACGCGTTGAGTG
AGGATAGCTGTTACTGAAAATCCACAGTAGCCATAGTGAGGGGACACTTC
GAGGATGCAGTACACATAGACCCGACCCCCA
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protein sequence of EsuBft925_8a-0001

>EsuBft925_8 ID=EsuBft925_8|Name=EsuBft925_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MPETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXX
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mRNA from alignment at Scaffold_491:488644..489513+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft925_8a-0001 ID=EsuBft925_8a-0001|Name=EsuBft925_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=870bp|location=Sequence derived from alignment at Scaffold_491:488644..489513+ (Ectocarpus subulatus male Bft15b)
ATGCCTGAGGTATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCG
CGACTTACGAAGTCGATTATGGTTTACTAACAAACGAGCTTTGCAGCGCG
TCGCTTTCATCCTAGACCAGGATTTAATTAGTGAGAAAAAAACTATCTCC
GCCGGGACTCGAACCCATGACCTGGCCCTTAGCAGGCTGAGAGGCTACCC
ACTAGACCACTGGGGCGACCGTGATGATAGTTGTATAATGAAACGTCAAG
GGTTCACTGAGGTTTGAGATTGCCAGGCACATGGACGGGTTGAGTGGGGA
TGGCTACATATGAAACCCACGGGTTGAGTGATGTTGGAGTGCCGGACACA
TAGACCCGTTGAGTGAGGATAGACACATACTGAAACCTCACAGGTGATTT
GTGATGGAGATTACCGGACACATAGACGCGCTGAGTGAGGATAGCTACAT
ACTGAAACCTCACAGATGGATTGGTTTTTGAGTTTGCCAGACACATAGAC
GCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGACGCATTGAGTGAAGAAAGCTGCATACTGAAACCTCACAGGTTGAT
TTGTATTGGAGATTGCCGGACACATAGACGCGTTGAGTGAGGATAGCTGT
TACTGAAAATCCACAGTAGCCATAGTGAGGGGACACTTCGAGGATGCAGT
ACACATAGACCCGACCCCCA
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Coding sequence (CDS) from alignment at Scaffold_491:488644..489513+

>EsuBft925_8a-0001 ID=EsuBft925_8a-0001|Name=EsuBft925_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_491:488644..489513+ (Ectocarpus subulatus male Bft15b)
ATGCCTGAGACGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN
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