EsuBft925_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft925_3a-0001
Unique NameEsuBft925_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_491contigScaffold_491:549119..550633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft925_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length31
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft925_3aEsuBft925_3aEctocarpus subulatus male Bft15bgeneScaffold_491 549119..550633 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_3a-0001-exonEsuBft925_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_491 549119..549353 +
EsuBft925_3a-0001-exonagat-exon-45070Ectocarpus subulatus male Bft15bexonScaffold_491 550552..550633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_3a-0001-cdsEsuBft925_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_491 549119..549292 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_3a-0001-exonagat-three_prime_utr-23117Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 549293..549353 +
EsuBft925_3a-0001-exonagat-three_prime_utr-23118Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 550552..550633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_3a-0001EsuBft925_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_491 549119..549292 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft925_3a-0001 ID=EsuBft925_3a-0001|Name=EsuBft925_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=317bp|location=Sequence derived from alignment at Scaffold_491:549119..550633+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACTCACGGATGTCCACACCTGGTTGTTCCCGCGCAGCGAGCCT
CGATCAAATGATCAACAACAACGTGGTTCGAGGAGTGGCGGTGGGGCATC
GACTTTCAATGTCTACTCGCACTTGGGACAGGGCGACGTGGACAATCCCT
ACGAGCAACACAACTTGGCCGTAGTGGCTCCGAGAGATTTCTACGGGACA
ACAGATCCCATTAACCACAGAAGCAGCAGCCATAGTGCTGGCAGCAGGAG
AGGCGGCGGTTCAAGAGATAGTGACAGCAGGCGCTCTTTCGCCAGCGCCG
GCGCTCAGGCCATCGGT
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protein sequence of EsuBft925_3a-0001

>EsuBft925_3 ID=EsuBft925_3|Name=EsuBft925_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MNNSRMSTPGCSRAASLDQMINNNVVRGVAVGHRLSMSTRTWDRATWTIP
TSNTTWP
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mRNA from alignment at Scaffold_491:549119..550633+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft925_3a-0001 ID=EsuBft925_3a-0001|Name=EsuBft925_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1515bp|location=Sequence derived from alignment at Scaffold_491:549119..550633+ (Ectocarpus subulatus male Bft15b)
ATGAACAACTCACGGATGTCCACACCTGGTTGTTCCCGCGCAGCGAGCCT
CGATCAAATGATCAACAACAACGTGGTTCGAGGAGTGGCGGTGGGGCATC
GACTTTCAATGTCTACTCGCACTTGGGACAGGGCGACGTGGACAATCCCT
ACGAGCAACACAACTTGGCCGTAGTGGCTCCGAGAGATTTCTACGGGACA
ACAGATCCCATTAACCACAGAAGCAGCAGCCATAGGTAAGAATGCGCGAT
CGCTCGCTCAAGGTGAAACAAGAAGGGGGGGCAGGGCTGCATCGATCGAC
CGCACATGGCATGCTTTGAAAGAAGAAACTACAATTACAGGCAGACAGGC
AGGCACGAGTTAGGCCCTTTGCTTTATGTCCAAAAGTAGACATGGCCGAC
TGCCGGCCCTTGGCACTGATTGTAGCCTTGACATGAACGGTTCTTGTTGT
ACATCTATCGGGAGGGACGGCTCGCTGGCAGGAACAATTATGACGTATGA
TCAGTGTTAACGGTAGTGCACGTAATGTGAAAGTAAGGGTCCTTTGGGGT
CTTGTGCTGCACGCTCAGTAGTATCCATCTCGCCATTGACCTCCCAACGT
CACTTCCTTGCGCCCCCTCCCGGGTTAGCTAGTACTCCAAATTAATCGTA
CGCCCAAAATGCCTCCTCTGCCTTACTAAGAGGTCTCCGTATCACCACCT
CTCCCAAAAAGACGCTAGGATCCACTCCAAAAACAAAATAGTCTACTCGC
AGCAAGGACAAACAATGTTACCACAACTTGTGGCATGTACGTTTACGTCC
GGAAAAAACATCGCTCAAGGCACGGCAAAGCATGATGAAAAAACGGCGAC
TACTGTAGCAGGAGTGATCACGAGACTAACGGCAGTATCCTCGCCCTCCC
ACAATCAAGCGTGAACGTCACACAATGGGTGGTGCTTTGTTTGGTGGAGA
TCGCTTCCTCGTGCATGCAGTCTTCGCCGCGAGAGGATATAACAGGCACC
AACTGCTGTTGGGCCAGACTTAAAACTCTTACGCCCGAAAAAAGCGTTGC
CGACGTTCACGGGGCGGACCGTTGCATCCTCCATGCATGCATGTGGAATG
TTGTGCATGGGTTCGCTCAAATTATACCTTTGGGCAGCAAACGGTCCCAT
CTCAACTCTGCCCGGGATTGTTCTTCATAAAACGAGGAAGTACGACCTAC
ATGTAGTTCGTGTATAAGCACGAAACGACCAATGTACCCAATCGCTCATC
GCTCTTACCCGCCACCCAAGACGAGAAGTTGCCTCTCGTGCTGCCGTTGG
TGCTGGTTCGATTCGCCAAGAAAGAAGCGAAATAGCTCTCTATCCGTACC
TACCTCTCCCTACTGTCTCTGTAGATCCGGAAATAAACGCCTGCCCCACT
CTGGAATTTTTGTTCATCCATGTGATATTTCAGTGCTGGCAGCAGGAGAG
GCGGCGGTTCAAGAGATAGTGACAGCAGGCGCTCTTTCGCCAGCGCCGGC
GCTCAGGCCATCGGT
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Coding sequence (CDS) from alignment at Scaffold_491:549119..550633+

>EsuBft925_3a-0001 ID=EsuBft925_3a-0001|Name=EsuBft925_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_491:549119..550633+ (Ectocarpus subulatus male Bft15b)
ATGAACAACTCACGGATGTCCACACCTGGTTGTTCCCGCGCAGCGAGCCT
CGATCAAATGATCAACAACAACGTGGTTCGAGGAGTGGCGGTGGGGCATC
GACTTTCAATGTCTACTCGCACTTGGGACAGGGCGACGTGGACAATCCCT
ACGAGCAACACAACTTGGCCGTAG
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