EsuBft925_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft925_13a-0001
Unique NameEsuBft925_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_491contigScaffold_491:457609..461284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPP8
ProteomeIdEsuBft925_13
Protein domainsSSF52402
Protein domainsIPR014730
Protein domainsPTHR10909
Protein domainsIPR014731
Protein domainsIPR014729
Protein domainsIPR001308
Protein domainsIPR029035
Ownerapollo_admin@sb-roscoff.fr
Noteelectron transfer flavoprotein subunit mitochondrial os:macaca fascicularis gn:etfa pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length2041
Hectar predicted targeting categorymitochondrion
Evalue9.82e-166
EggNOG OGsCOG2025@1|root,KOG3954@2759|Eukaryota
Ec32 ortholog descriptionDHS-like NAD/FAD-binding domain
Ec32 orthologEc-18_002000.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameETFA
KEGG koko:K03522
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046872,GO:0046914,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575
Descriptionfatty acid beta-oxidation using acyl-CoA dehydrogenase
COG categoryC
BRITEko00000,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0044281
GO0005759
GO0016491
GO0005507
GO0050660
GO0009055
GO0070062
GO0022904
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft925_13aEsuBft925_13aEctocarpus subulatus male Bft15bgeneScaffold_491 457609..461284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_13a-0001EsuBft925_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_491 457690..460152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_13a-0001-exonEsuBft925_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_491 457609..457893 +
EsuBft925_13a-0001-exonagat-exon-45120Ectocarpus subulatus male Bft15bexonScaffold_491 458092..458193 +
EsuBft925_13a-0001-exonagat-exon-45119Ectocarpus subulatus male Bft15bexonScaffold_491 459631..461284 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_13a-0001-exonagat-five_prime_utr-15029Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_491 457609..457689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_13a-0001-cdsEsuBft925_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_491 457690..457893 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_13a-0001-exonagat-three_prime_utr-23105Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 460153..461284 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft925_13a-0001 ID=EsuBft925_13a-0001|Name=EsuBft925_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2041bp|location=Sequence derived from alignment at Scaffold_491:457609..461284+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTAGTTATACAGAATAGAGCCTGCTTTAGGTCGTTATCTCGCATCCACA
AGATTGACCTGGGGAGCACCTTCGGGTAGTAATGAGTCGACGACTGGCAA
TGATTGGATCGAGGCAACTGCTGTCACAAGCATGCCGACGTCAACTGTCA
AGCCTCGTCGTGGCCGAACACGACAACTCGCATCTGCTCCCTGGCACTCT
CAGTGCGGTGACTGCAGCGGCGCAGCTAAATGGAGACATCACAATGCTTG
TCCTGGGCCATGAATCCGAGGGCGTGGCGAAGCAGGCAGCGCACGTTGCT
GGTGTTTCTAAGGTTCTGCATGCTGACGATCCAGCATATGGAACATGGGT
CGCGGAAAACGTGTCCAGGGCTGTGGCGACGGTGCAGGCAAATGGGGCTT
TTTCTCACATCCTGGCTGTTTCCAGCATGGCCGGAAAAAACTTCGTGGGT
CGGTTAGGAGCCGAGCTTGACTGTGCCCCCGTGACGGATATCCTTAAAGT
AGTCGATGAGGAGACGTTTGTGCGACCGATGTACGCCGGGAATGCTGTTG
CGACAGTACGTGCAGCGGGTGCTTTGAAAATTCTGACTGTCCGACCTACC
TCGTTCGAGAAAGCGGAGGCCACTGGAGGCACCGCATCAGTAGAGTCAAC
AGCGCCCCCTGAGAGTGGCGCCGACGCTGGTCTAGCGTCGTTCGTGTCTG
AATCCAAAAGCGGAGGGGACCGACCGGACCTTACAACGGCGAGGGTGGTT
GTGGCTGGCGGCCGTGGATTGAAGGACGGCGAGAACTTCAAAATCCTTGA
GAAGTTAGCAGACAAACTTGGAGGAGCAGTAGGAGCCTCGAGAGCGGCTG
TTGATGCTGGCTTTGTGGCAAACGAACTGCAGGCAAGAGATTTTGTAGGG
TATGCATGAACCCTGGCGAAAATCGACGTGTGTGTACGGAATAATCGTAG
AAGTCTAGAGTACTCTTATGTGCGCGCTTAGCATGGTTGTTTTAAAACAT
CGTCGTTTCTGGGAATGCTCCAGAAACTTCACACATGTGTTCGTCGAGTG
CTGATGCGTTTGTGTGCTGATGATCTTATTAGCGCGAGCCGTTCTACACG
AAGGAGGGGCTCAATCTTGCTTTACCGAAGCCGGATGCAGATACTTCTGT
GAGCATACTCTGAACTACTGCCTCCGAGTTGTGCGTAACATCTGGCGTTT
CACACAGGTCGACCTTGCAGTGCTTTGATCCGGAGTACTCATTCGCCAAT
AATGCACTCCAGAAGCTATGTTTTATATTGGAGGCGCTTGTGTCAACCTG
CCGATCATGGTTGCTCGAACAACTGTTGATGTACACAGTTGGTTTTTAGA
CTGCACAAGAGGTAGGGTAGGCTTTGACTGCGACATTCTTCGCTTGCTCG
ATAAAATTTTAACAGGTGGGCCAAACAGGCAAGGTGGTGGCACCCGAACT
GTACATTGGGGTTGGTATTTCTGGGGCAATCCAGCACTTGTCGGGCATGA
AAGACAGCAAATGCATCGTGGCCATCAACAAGGACAAGGAGGCCCCCATA
TTCCAGGCGGCTGACTACGGCTTGGTCGCTGATCTTTTCGACGCCGTGCC
CGAGCTAGAATCGAAAGTATAACATCGAACGAAGAGAGTGGGAAAGTGCG
TGGTTCCGGCGATGTAAAGGTGGTTTCCACCTTGTGCCCGTTGGGAGCCT
TGTGATCATTTTATCTTAGCCATTCAGAACTTGTGTCCTTCTCGCGAACT
TTCCAGTGAACTTTGAGGACGGTAAGCAGTGTAAATAGGGAGGTGTGTGG
ATCGCGTGTTCACGGGGTCGTAATTGTCGAGGAGGGGTGCTATCAGGCAT
TGTTGGCCAAGGTCTGTTCAACAGCACTCGAGAGTAAAAGAGGTTGAGAA
TTGGCAGACGGCATGTTTTCGGCGTTGTAGAGGTTCCGAGTGGATTCCCC
GAGACTCTCCATCATAGGACTAGGTTCAAACAAGCTCTCTTGGTGCACCT
GGACCCCCATATGTATATGCCAGTGCTGGAGTTAAACAGTT
back to top

protein sequence of EsuBft925_13a-0001

>EsuBft925_13 ID=EsuBft925_13|Name=EsuBft925_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=275bp
MSRRLAMIGSRQLLSQACRRQLSSLVVAEHDNSHLLPGTLSAVTAAAQLN
GDITMLVLGHESEGVAKQAAHVAGVSKVLHADDPAYGTWVAENVSRAVAT
VQANGAFSHILAVSSMAGKNFVGRLGAELDCAPVTDILKVVDEETFVRPM
YAGNAVATVRAAGALKILTVRPTSFEKAEATGGTASVESTAPPESGADAG
LASFVSESKSGGDRPDLTTARVVVAGGRGLKDGENFKILEKLADKLGGAV
GASRAAVDAGFVANELQARDFVGYA
back to top

mRNA from alignment at Scaffold_491:457609..461284+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft925_13a-0001 ID=EsuBft925_13a-0001|Name=EsuBft925_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3676bp|location=Sequence derived from alignment at Scaffold_491:457609..461284+ (Ectocarpus subulatus male Bft15b)
GTTAGTTATACAGAATAGAGCCTGCTTTAGGTCGTTATCTCGCATCCACA
AGATTGACCTGGGGAGCACCTTCGGGTAGTAATGAGTCGACGACTGGCAA
TGATTGGATCGAGGCAACTGCTGTCACAAGCATGCCGACGTCAACTGTCA
AGCCTCGTCGTGGCCGAACACGACAACTCGCATCTGCTCCCTGGCACTCT
CAGTGCGGTGACTGCAGCGGCGCAGCTAAATGGAGACATCACAATGCTTG
TCCTGGGCCATGAATCCGAGGGCGTGGCGAAGCAGGTGAAAGAGAGGATG
TAAGACGTACGAAGTAGCACGGAGCGTTCTGACGATGTACTTCAAGTTCA
ACTTCGGTTCATCCGTTCCCGCGAGAAAAGCACGTGTTGCACCGGGTAAA
CGTCATAACCACTGCTGTAGATCCAATGACGGTGCGTCAACTCGCGTTTG
CGTTGGTTTCCGTCACGCACACGGCTTGCGCAGGCAGCGCACGTTGCTGG
TGTTTCTAAGGTTCTGCATGCTGACGATCCAGCATATGGAACATGGGTCG
CGGAAAACGTGTCCAGGGCTGTGGCGACGGTGCAGGTAAGGTTATGCCGT
TACACCGACGAAACAGAAACACTCTGCTCTAATTTTGTGCCTGTTCCCTG
TCTCAGACGAAGAACGTTGGCCCTGGGCGCCTTGTGTAAGAGATATTCAG
TCCAAATCACCCACACAGACTTCAGTGCTTTCGTGTGCCCGTGTGTGTGC
GCGATGGGACACCCACCGACCACTGCTGCTGTAACAGGATTGAGAGACGA
CGAAGGGGTACTCAACAAAGCAGCTGCTACGTGTATGCGTAGATCAAACA
AGTACACAGCAGTCCCTGTAGGGAAACGCAGCAGGACCGGGACATCACGA
TGGTGCGCCGACGCACGAGCGGGGGGTCTTGTGCTTCTGTGGCTCGCGGT
TTGGGTGGCTAGCTAAGATGTTTTTGTGTTCGTACAAACGTGTCAAGGAG
CACTCTATTATGCTCACGTGACAACACCGCCGTATTGTTACTTCACGTAT
CTTGGATGTTCAGCTTGCCTCACTGCTGCAAAATGCGTGGTACGCATACA
GCAGTAGGCAACTGCTGTTGTTCTCTCACACCACCACCAACTTGCTCTCA
AGGAGTACAGCAGTACCTTCAAATTTTTCGGATGGTCGAGATTGTGACAC
TACTGTTTAAATTGTAGAGCAACGTCAAGAGAAAAAGAAAAGTGTACGAC
TTGTAGGTACATCGCCGTTTTTCGAACAATGGAGACAGGCCCGCCGCAAT
TTTGTTATTTGATGAGAGCCGACCGTAAGGACTCGTGCTGCTAGAATACA
AGTAGCTGAAAAAGAGGAGCAAAAGCGGAAAGGAATATTTGAAATATATT
TGGAATTACCATTGGCGTAGTTGTTCCGAGCGGTGGCCATGCTGTGTGTG
TGTGTGTTTGTGTGTTTTGGTCCTATTTATTATGGCGACAGTCCCCACAT
TTTTCGTGGTGAGACGTGTACTACACTTTTCAGGGTATGTGGAGTATATG
TAGAGTACTACACTATTCAGTGTATTTCTTCGTACAACTACAACCATCCA
GGGTCACACAGGAGGGGGTAAACACCAGGGCTTTTTTTTCTTCTTTTTGT
TTCTTTCGATGCCCCACCTTCCTCCTGCGGTGCGTGCTGAATTTAATTTT
TATCGCAAGAAGGGCCCAGCCGTTCCTTTCCCTCGTCGACGGTGTTAACG
TCGAAGAATTGTACTCACGAGAGCTTGTCGGCTATATTTCGCTTTCACCC
GCACATGTCCTAAATTTTTCACCCCATGGGGATTCGAACTCACTACATCT
GCAACTGGCGGATTACGAGGGTGCCACTAGACCACCGGGGCGACCTGTGT
GAACAACCGCCGAACAGGCATTCATTCTGTACATATACACCATGGTACGC
CATAGATTTGGTTGCGATTATCCTAATTCACATCCCACGACTCTTCTGGT
CGTGTTCGCTTGTACGAAGCAGGCAAATGGGGCTTTTTCTCACATCCTGG
CTGTTTCCAGCATGGCCGGAAAAAACTTCGTGGGTCGGTTAGGAGCCGAG
CTTGACTGTGCCCCCGTGACGGATATCCTTAAAGTAGTCGATGAGGAGAC
GTTTGTGCGACCGATGTACGCCGGGAATGCTGTTGCGACAGTACGTGCAG
CGGGTGCTTTGAAAATTCTGACTGTCCGACCTACCTCGTTCGAGAAAGCG
GAGGCCACTGGAGGCACCGCATCAGTAGAGTCAACAGCGCCCCCTGAGAG
TGGCGCCGACGCTGGTCTAGCGTCGTTCGTGTCTGAATCCAAAAGCGGAG
GGGACCGACCGGACCTTACAACGGCGAGGGTGGTTGTGGCTGGCGGCCGT
GGATTGAAGGACGGCGAGAACTTCAAAATCCTTGAGAAGTTAGCAGACAA
ACTTGGAGGAGCAGTAGGAGCCTCGAGAGCGGCTGTTGATGCTGGCTTTG
TGGCAAACGAACTGCAGGCAAGAGATTTTGTAGGGTATGCATGAACCCTG
GCGAAAATCGACGTGTGTGTACGGAATAATCGTAGAAGTCTAGAGTACTC
TTATGTGCGCGCTTAGCATGGTTGTTTTAAAACATCGTCGTTTCTGGGAA
TGCTCCAGAAACTTCACACATGTGTTCGTCGAGTGCTGATGCGTTTGTGT
GCTGATGATCTTATTAGCGCGAGCCGTTCTACACGAAGGAGGGGCTCAAT
CTTGCTTTACCGAAGCCGGATGCAGATACTTCTGTGAGCATACTCTGAAC
TACTGCCTCCGAGTTGTGCGTAACATCTGGCGTTTCACACAGGTCGACCT
TGCAGTGCTTTGATCCGGAGTACTCATTCGCCAATAATGCACTCCAGAAG
CTATGTTTTATATTGGAGGCGCTTGTGTCAACCTGCCGATCATGGTTGCT
CGAACAACTGTTGATGTACACAGTTGGTTTTTAGACTGCACAAGAGGTAG
GGTAGGCTTTGACTGCGACATTCTTCGCTTGCTCGATAAAATTTTAACAG
GTGGGCCAAACAGGCAAGGTGGTGGCACCCGAACTGTACATTGGGGTTGG
TATTTCTGGGGCAATCCAGCACTTGTCGGGCATGAAAGACAGCAAATGCA
TCGTGGCCATCAACAAGGACAAGGAGGCCCCCATATTCCAGGCGGCTGAC
TACGGCTTGGTCGCTGATCTTTTCGACGCCGTGCCCGAGCTAGAATCGAA
AGTATAACATCGAACGAAGAGAGTGGGAAAGTGCGTGGTTCCGGCGATGT
AAAGGTGGTTTCCACCTTGTGCCCGTTGGGAGCCTTGTGATCATTTTATC
TTAGCCATTCAGAACTTGTGTCCTTCTCGCGAACTTTCCAGTGAACTTTG
AGGACGGTAAGCAGTGTAAATAGGGAGGTGTGTGGATCGCGTGTTCACGG
GGTCGTAATTGTCGAGGAGGGGTGCTATCAGGCATTGTTGGCCAAGGTCT
GTTCAACAGCACTCGAGAGTAAAAGAGGTTGAGAATTGGCAGACGGCATG
TTTTCGGCGTTGTAGAGGTTCCGAGTGGATTCCCCGAGACTCTCCATCAT
AGGACTAGGTTCAAACAAGCTCTCTTGGTGCACCTGGACCCCCATATGTA
TATGCCAGTGCTGGAGTTAAACAGTT
back to top

Coding sequence (CDS) from alignment at Scaffold_491:457609..461284+

>EsuBft925_13a-0001 ID=EsuBft925_13a-0001|Name=EsuBft925_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=828bp|location=Sequence derived from alignment at Scaffold_491:457609..461284+ (Ectocarpus subulatus male Bft15b)
ATGAGTCGACGACTGGCAATGATTGGATCGAGGCAACTGCTGTCACAAGC
ATGCCGACGTCAACTGTCAAGCCTCGTCGTGGCCGAACACGACAACTCGC
ATCTGCTCCCTGGCACTCTCAGTGCGGTGACTGCAGCGGCGCAGCTAAAT
GGAGACATCACAATGCTTGTCCTGGGCCATGAATCCGAGGGCGTGGCGAA
GCAGGCAGCGCACGTTGCTGGTGTTTCTAAGGTTCTGCATGCTGACGATC
CAGCATATGGAACATGGGTCGCGGAAAACGTGTCCAGGGCTGTGGCGACG
GTGCAGGCAAATGGGGCTTTTTCTCACATCCTGGCTGTTTCCAGCATGGC
CGGAAAAAACTTCGTGGGTCGGTTAGGAGCCGAGCTTGACTGTGCCCCCG
TGACGGATATCCTTAAAGTAGTCGATGAGGAGACGTTTGTGCGACCGATG
TACGCCGGGAATGCTGTTGCGACAGTACGTGCAGCGGGTGCTTTGAAAAT
TCTGACTGTCCGACCTACCTCGTTCGAGAAAGCGGAGGCCACTGGAGGCA
CCGCATCAGTAGAGTCAACAGCGCCCCCTGAGAGTGGCGCCGACGCTGGT
CTAGCGTCGTTCGTGTCTGAATCCAAAAGCGGAGGGGACCGACCGGACCT
TACAACGGCGAGGGTGGTTGTGGCTGGCGGCCGTGGATTGAAGGACGGCG
AGAACTTCAAAATCCTTGAGAAGTTAGCAGACAAACTTGGAGGAGCAGTA
GGAGCCTCGAGAGCGGCTGTTGATGCTGGCTTTGTGGCAAACGAACTGCA
GGCAAGAGATTTTGTAGGGTATGCATGA
back to top