Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft923_3 |
| Protein domains | PTHR32134 |
| Protein domains | SSF52058 |
| Protein domains | IPR008615 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation] |
| Nb exon | 1 |
| Length | 1257 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft923_3a-0001 ID=EsuBft923_3a-0001|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1257bp|location=Sequence derived from alignment at Scaffold_230:150917..152173- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGCGGCCCTCACGATCGTGAGGTCGACCATGGACCTCCAATGCTC
GCCATTGACGCTCAACGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTGA
TGGTTGTTGGAGACTATATGCCACTCAAACGCCTGGCTGGAAGCAAGAAG
AACCACGAGGCCGGAGTGCCCCCGGCTACGGCCGGTGACATGATGACCGG
GCCAGGCCTCATGCCGGAGTCAAAAAGGGTACCTCAAATCCTTCCGCACG
GTTTGGTGTGGTGCCTGCCCCTGGAGGCGTTCGGGCAGGGTGACGTTGAC
CTCCCAGTTGTGCGTAACCTGCGACTCACCGAGGCAGCCAACCTGCCGGA
TGACCTGAAGTTGCCGCTGTCCATTGAGCACCTGGACGTTGGGGACGAGT
TCGACCACTCCATCGTTGGAGTGGAGTGGCCGGCAGCCCTGAAGCGGCTC
GACTTCGGTATTGCTTTCGACCAATCCATCGTCCAAGTCGCGTGGCCAGC
CTCCTCGCTGCGCCTCCAGTTCGTTTGTCATTTCAATCAACCGCTCGCCG
AGGGCGCGTGGCCGGACTCGTTGCTGCAGATCGAGTTCGAGTATGCGTTT
AACCAGTCAATCGCAGTCGACTGGCCAGCATCGTTGTGCGAGCTAACCTT
GGGGTCGAACTTCGACCAACCAATTTCCGGCGTCACGTGGCCGCCTTCGC
TACACCGGTTCCAGTTCGATGGATATTTCGACCAATCGCTCTTGGAGGTT
GTGTGGCCACCCACACTGCAGCGCCTCCAATTCGGATACGGCTTCAACAA
GCCTATCGCCGGAGTCGCCTGGCCGTCTTCATTGCAGCGCCTCCAGTTCG
GCAGTTATTTCAACCAACCGCTGGTGGAGGTTGCCTGGCGGGCCTCACTG
CTGAAACTCCAGTTCGGGGAATTCTTCAATCAGCCCCTCGCCGGAGTCAC
ATGGCCCTTGTCGCTGCAAGACCTAGAGTTCAATGTTGAATTCAATCAGC
GCCTCACCGGAGTCGTGTGGCCGCCTTTCCTGAAGCGGCTCAAGTTCGGT
TTCTACTTCAACCATCCAATAATCGGAATCGGATGGCCTTCATCCCTACA
GCACCTAGCTTTCGGTGGGGGATTCCACCAGTCAATCGAACGAGTTGTGT
GGCCGCGCTCGGCCCTTGCTCTGAAGATGGCCATTTGGGATGAGTGGCCG
CCCTCGGCACCAGCTCTGTTTTTTAACGGCGAGATTCTTCGCGTACCAGA
AACTTAG back to topprotein sequence of EsuBft923_3a-0001 >EsuBft923_3 ID=EsuBft923_3|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=418bp
MEAALTIVRSTMDLQCSPLTLNEACRRAPTLVVMVVGDYMPLKRLAGSKK
NHEAGVPPATAGDMMTGPGLMPESKRVPQILPHGLVWCLPLEAFGQGDVD
LPVVRNLRLTEAANLPDDLKLPLSIEHLDVGDEFDHSIVGVEWPAALKRL
DFGIAFDQSIVQVAWPASSLRLQFVCHFNQPLAEGAWPDSLLQIEFEYAF
NQSIAVDWPASLCELTLGSNFDQPISGVTWPPSLHRFQFDGYFDQSLLEV
VWPPTLQRLQFGYGFNKPIAGVAWPSSLQRLQFGSYFNQPLVEVAWRASL
LKLQFGEFFNQPLAGVTWPLSLQDLEFNVEFNQRLTGVVWPPFLKRLKFG
FYFNHPIIGIGWPSSLQHLAFGGGFHQSIERVVWPRSALALKMAIWDEWP
PSAPALFFNGEILRVPET back to topmRNA from alignment at Scaffold_230:150917..152173- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft923_3a-0001 ID=EsuBft923_3a-0001|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1257bp|location=Sequence derived from alignment at Scaffold_230:150917..152173- (Ectocarpus subulatus male Bft15b)
ATGGAGGCGGCCCTCACGATCGTGAGGTCGACCATGGACCTCCAATGCTC
GCCATTGACGCTCAACGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTGA
TGGTTGTTGGAGACTATATGCCACTCAAACGCCTGGCTGGAAGCAAGAAG
AACCACGAGGCCGGAGTGCCCCCGGCTACGGCCGGTGACATGATGACCGG
GCCAGGCCTCATGCCGGAGTCAAAAAGGGTACCTCAAATCCTTCCGCACG
GTTTGGTGTGGTGCCTGCCCCTGGAGGCGTTCGGGCAGGGTGACGTTGAC
CTCCCAGTTGTGCGTAACCTGCGACTCACCGAGGCAGCCAACCTGCCGGA
TGACCTGAAGTTGCCGCTGTCCATTGAGCACCTGGACGTTGGGGACGAGT
TCGACCACTCCATCGTTGGAGTGGAGTGGCCGGCAGCCCTGAAGCGGCTC
GACTTCGGTATTGCTTTCGACCAATCCATCGTCCAAGTCGCGTGGCCAGC
CTCCTCGCTGCGCCTCCAGTTCGTTTGTCATTTCAATCAACCGCTCGCCG
AGGGCGCGTGGCCGGACTCGTTGCTGCAGATCGAGTTCGAGTATGCGTTT
AACCAGTCAATCGCAGTCGACTGGCCAGCATCGTTGTGCGAGCTAACCTT
GGGGTCGAACTTCGACCAACCAATTTCCGGCGTCACGTGGCCGCCTTCGC
TACACCGGTTCCAGTTCGATGGATATTTCGACCAATCGCTCTTGGAGGTT
GTGTGGCCACCCACACTGCAGCGCCTCCAATTCGGATACGGCTTCAACAA
GCCTATCGCCGGAGTCGCCTGGCCGTCTTCATTGCAGCGCCTCCAGTTCG
GCAGTTATTTCAACCAACCGCTGGTGGAGGTTGCCTGGCGGGCCTCACTG
CTGAAACTCCAGTTCGGGGAATTCTTCAATCAGCCCCTCGCCGGAGTCAC
ATGGCCCTTGTCGCTGCAAGACCTAGAGTTCAATGTTGAATTCAATCAGC
GCCTCACCGGAGTCGTGTGGCCGCCTTTCCTGAAGCGGCTCAAGTTCGGT
TTCTACTTCAACCATCCAATAATCGGAATCGGATGGCCTTCATCCCTACA
GCACCTAGCTTTCGGTGGGGGATTCCACCAGTCAATCGAACGAGTTGTGT
GGCCGCGCTCGGCCCTTGCTCTGAAGATGGCCATTTGGGATGAGTGGCCG
CCCTCGGCACCAGCTCTGTTTTTTAACGGCGAGATTCTTCGCGTACCAGA
AACTTAG back to topCoding sequence (CDS) from alignment at Scaffold_230:150917..152173- >EsuBft923_3a-0001 ID=EsuBft923_3a-0001|Name=EsuBft923_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1257bp|location=Sequence derived from alignment at Scaffold_230:150917..152173- (Ectocarpus subulatus male Bft15b)
ATGGAGGCGGCCCTCACGATCGTGAGGTCGACCATGGACCTCCAATGCTC
GCCATTGACGCTCAACGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTGA
TGGTTGTTGGAGACTATATGCCACTCAAACGCCTGGCTGGAAGCAAGAAG
AACCACGAGGCCGGAGTGCCCCCGGCTACGGCCGGTGACATGATGACCGG
GCCAGGCCTCATGCCGGAGTCAAAAAGGGTACCTCAAATCCTTCCGCACG
GTTTGGTGTGGTGCCTGCCCCTGGAGGCGTTCGGGCAGGGTGACGTTGAC
CTCCCAGTTGTGCGTAACCTGCGACTCACCGAGGCAGCCAACCTGCCGGA
TGACCTGAAGTTGCCGCTGTCCATTGAGCACCTGGACGTTGGGGACGAGT
TCGACCACTCCATCGTTGGAGTGGAGTGGCCGGCAGCCCTGAAGCGGCTC
GACTTCGGTATTGCTTTCGACCAATCCATCGTCCAAGTCGCGTGGCCAGC
CTCCTCGCTGCGCCTCCAGTTCGTTTGTCATTTCAATCAACCGCTCGCCG
AGGGCGCGTGGCCGGACTCGTTGCTGCAGATCGAGTTCGAGTATGCGTTT
AACCAGTCAATCGCAGTCGACTGGCCAGCATCGTTGTGCGAGCTAACCTT
GGGGTCGAACTTCGACCAACCAATTTCCGGCGTCACGTGGCCGCCTTCGC
TACACCGGTTCCAGTTCGATGGATATTTCGACCAATCGCTCTTGGAGGTT
GTGTGGCCACCCACACTGCAGCGCCTCCAATTCGGATACGGCTTCAACAA
GCCTATCGCCGGAGTCGCCTGGCCGTCTTCATTGCAGCGCCTCCAGTTCG
GCAGTTATTTCAACCAACCGCTGGTGGAGGTTGCCTGGCGGGCCTCACTG
CTGAAACTCCAGTTCGGGGAATTCTTCAATCAGCCCCTCGCCGGAGTCAC
ATGGCCCTTGTCGCTGCAAGACCTAGAGTTCAATGTTGAATTCAATCAGC
GCCTCACCGGAGTCGTGTGGCCGCCTTTCCTGAAGCGGCTCAAGTTCGGT
TTCTACTTCAACCATCCAATAATCGGAATCGGATGGCCTTCATCCCTACA
GCACCTAGCTTTCGGTGGGGGATTCCACCAGTCAATCGAACGAGTTGTGT
GGCCGCGCTCGGCCCTTGCTCTGAAGATGGCCATTTGGGATGAGTGGCCG
CCCTCGGCACCAGCTCTGTTTTTTAACGGCGAGATTCTTCGCGTACCAGA
AACTTAG back to top
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