EsuBft923_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft923_2a-0001
Unique NameEsuBft923_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:159618..160077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft923_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length38
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft923_2aEsuBft923_2aEctocarpus subulatus male Bft15bgeneScaffold_230 159618..160077 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft923_2a-0001-exonEsuBft923_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 159618..159672 +
EsuBft923_2a-0001-exonagat-exon-86035Ectocarpus subulatus male Bft15bexonScaffold_230 159744..160077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft923_2a-0001-cdsEsuBft923_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 159618..159672 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft923_2a-0001-exonagat-three_prime_utr-23089Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 159962..160077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft923_2a-0001EsuBft923_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 159618..159961 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft923_2a-0001 ID=EsuBft923_2a-0001|Name=EsuBft923_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=389bp|location=Sequence derived from alignment at Scaffold_230:159618..160077+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTGGAACGGGCCGGAGGGGGGGACGCGTGGGGCAGACGCGGGGAG
AAGGCGGGAAGGGGCGGGGGAGGTGGGCAGTAAGACAACGGCGGCGTCGT
TCAGCTTTGCCAAGCAAGTTCCTTGGAGGAGCTGGTTCTCGGATGCGTCG
ACGAGAGCGTTGGGGGGGGTTTGCATGGAAACGAGGGTGTTCTGGAGGTA
CGAGTTGCCGATGGAGGTACAAGGAAGGACGGTATGGGCGAGGCAGAAGG
GAGAAGGGGACTTATGTGCATAAACGTGCTAGCAGTGATGGCGATGGTGA
TGACGGCGTATATGATGGTAATTTCGTGGGGGGAAAGACCGGAGCGGGAA
GGAGAGGCGATGATGATGAGGGCGGACAACGAGAGCGCC
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protein sequence of EsuBft923_2a-0001

>EsuBft923_2 ID=EsuBft923_2|Name=EsuBft923_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MGWNGPEGGTRGADAGRRREGAGEVGSKTTAASFSFAKQVPWRSWFSDAS
TRALGGVCMETRVFWRYELPMEVQGRTVWARQKGEGDLCA
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mRNA from alignment at Scaffold_230:159618..160077+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft923_2a-0001 ID=EsuBft923_2a-0001|Name=EsuBft923_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=460bp|location=Sequence derived from alignment at Scaffold_230:159618..160077+ (Ectocarpus subulatus male Bft15b)
ATGGGGTGGAACGGGCCGGAGGGGGGGACGCGTGGGGCAGACGCGGGGAG
AAGGCGTAAGCACGCAAGGTAGTAAAACTGACATGGGAGTTTATGACAGA
GGTGGGGAGGTGGCGGTGGTAACCAGGGGAAGGGGCGGGGGAGGTGGGCA
GTAAGACAACGGCGGCGTCGTTCAGCTTTGCCAAGCAAGTTCCTTGGAGG
AGCTGGTTCTCGGATGCGTCGACGAGAGCGTTGGGGGGGGTTTGCATGGA
AACGAGGGTGTTCTGGAGGTACGAGTTGCCGATGGAGGTACAAGGAAGGA
CGGTATGGGCGAGGCAGAAGGGAGAAGGGGACTTATGTGCATAAACGTGC
TAGCAGTGATGGCGATGGTGATGACGGCGTATATGATGGTAATTTCGTGG
GGGGAAAGACCGGAGCGGGAAGGAGAGGCGATGATGATGAGGGCGGACAA
CGAGAGCGCC
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Coding sequence (CDS) from alignment at Scaffold_230:159618..160077+

>EsuBft923_2a-0001 ID=EsuBft923_2a-0001|Name=EsuBft923_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=273bp|location=Sequence derived from alignment at Scaffold_230:159618..160077+ (Ectocarpus subulatus male Bft15b)
ATGGGGTGGAACGGGCCGGAGGGGGGGACGCGTGGGGCAGACGCGGGGAG
AAGGCGGGAAGGGGCGGGGGAGGTGGGCAGTAAGACAACGGCGGCGTCGT
TCAGCTTTGCCAAGCAAGTTCCTTGGAGGAGCTGGTTCTCGGATGCGTCG
ACGAGAGCGTTGGGGGGGGTTTGCATGGAAACGAGGGTGTTCTGGAGGTA
CGAGTTGCCGATGGAGGTACAAGGAAGGACGGTATGGGCGAGGCAGAAGG
GAGAAGGGGACTTATGTGCATAA
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