EsuBft922_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft922_7a-0001
Unique NameEsuBft922_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_270contigScaffold_270:126379..127264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft922_7
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length81
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft922_7aEsuBft922_7aEctocarpus subulatus male Bft15bgeneScaffold_270 126379..127264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_7a-0001-exonEsuBft922_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_270 126379..126721 +
EsuBft922_7a-0001-exonagat-exon-65576Ectocarpus subulatus male Bft15bexonScaffold_270 126796..127264 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_7a-0001-exonagat-five_prime_utr-15019Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_270 126379..126440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_7a-0001-cdsEsuBft922_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_270 126441..126721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_7a-0001EsuBft922_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_270 126441..127264 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft922_7a-0001 ID=EsuBft922_7a-0001|Name=EsuBft922_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=812bp|location=Sequence derived from alignment at Scaffold_270:126379..127264+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTGTTCAACTTGTTCC
TTGCCGCGATCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCC
CAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGG
GCAAGAAGGGCAGGTCGGCGGGGAGGAAGACGACGGTGGTGACGGACGCG
GAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCG
CTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCG
GCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATACAGACC
GGTTTGTGTACCTCGGACGTACCATCTCCGCGAACGGGAACGCCGACCGG
GAGATCACGAGCCGCAGCTGCCGAGCGTGGGAGTAAGTGCTACCACCGGA
ACAGTGCTTCGATGTACGACGACAGGCGACGGGCCGACCGCCAGCTCAAG
ATCCGGCTACTCCAGGCTGAAGTGGTGGATTCTCTCTTGTATGGGTGCGC
CTCGTGGAGCCTAACAGCGGAGCACTACTACTACACGAAGTTCAATGGGA
CCCACCGCCAGTTCCTTACACGGTGCATCATCGGCTGGAGCAAGCCGAAA
CGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTG
CGAGGAAACCATCGAGGCCACCGTGCCCAAACAAACGGAGACTGTGTTTC
GCGGGCTTTGTTATTATGCGCATGGAGGACAACCGCCTCCCCAAGCGCAT
GCATGCTGCTAG
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protein sequence of EsuBft922_7a-0001

>EsuBft922_7 ID=EsuBft922_7|Name=EsuBft922_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=249bp
MLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGRKTTVVTDAEALW
AMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIIQTGLCT
SDVPSPRTGTPTGRSRAAAAERGSKCYHRNSASMYDDRRRADRQLKIRLL
QAEVVDSLLYGCASWSLTAEHYYYTKFNGTHRQFLTRCIIGWSKPKRSDR
PLSYAQALIQAGCEETIEATVPKQTETVFRGLCYYAHGGQPPPQAHACC
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mRNA from alignment at Scaffold_270:126379..127264+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft922_7a-0001 ID=EsuBft922_7a-0001|Name=EsuBft922_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=886bp|location=Sequence derived from alignment at Scaffold_270:126379..127264+ (Ectocarpus subulatus male Bft15b)
CCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTGTTCAACTTGTTCC
TTGCCGCGATCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCC
CAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGG
GCAAGAAGGGCAGGTCGGCGGGGAGGAAGACGACGGTGGTGACGGACGCG
GAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCG
CTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCG
GCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGTATGTG
CATGCTGCCGAAAGGGATTGTGGAACGCCCGTTCACGGTCAGCGCCGCCG
GCCAGACGTACAAGCAGACAGACCGGTTTGTGTACCTCGGACGTACCATC
TCCGCGAACGGGAACGCCGACCGGGAGATCACGAGCCGCAGCTGCCGAGC
GTGGGAGTAAGTGCTACCACCGGAACAGTGCTTCGATGTACGACGACAGG
CGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTGGT
GGATTCTCTCTTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCACT
ACTACTACACGAAGTTCAATGGGACCCACCGCCAGTTCCTTACACGGTGC
ATCATCGGCTGGAGCAAGCCGAAACGCTCAGACCGCCCCCTGTCCTATGC
CCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGC
CCAAACAAACGGAGACTGTGTTTCGCGGGCTTTGTTATTATGCGCATGGA
GGACAACCGCCTCCCCAAGCGCATGCATGCTGCTAG
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Coding sequence (CDS) from alignment at Scaffold_270:126379..127264+

>EsuBft922_7a-0001 ID=EsuBft922_7a-0001|Name=EsuBft922_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=750bp|location=Sequence derived from alignment at Scaffold_270:126379..127264+ (Ectocarpus subulatus male Bft15b)
ATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAGGGCA
GGTCGGCGGGGAGGAAGACGACGGTGGTGACGGACGCGGAGGCCTTGTGG
GCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGGTGTCGGAGCCAAAGACGGAGATCATACAGACCGGTTTGTGTACC
TCGGACGTACCATCTCCGCGAACGGGAACGCCGACCGGGAGATCACGAGC
CGCAGCTGCCGAGCGTGGGAGTAAGTGCTACCACCGGAACAGTGCTTCGA
TGTACGACGACAGGCGACGGGCCGACCGCCAGCTCAAGATCCGGCTACTC
CAGGCTGAAGTGGTGGATTCTCTCTTGTATGGGTGCGCCTCGTGGAGCCT
AACAGCGGAGCACTACTACTACACGAAGTTCAATGGGACCCACCGCCAGT
TCCTTACACGGTGCATCATCGGCTGGAGCAAGCCGAAACGCTCAGACCGC
CCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCAT
CGAGGCCACCGTGCCCAAACAAACGGAGACTGTGTTTCGCGGGCTTTGTT
ATTATGCGCATGGAGGACAACCGCCTCCCCAAGCGCATGCATGCTGCTAG
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