EsuBft922_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft922_4a-0001
Unique NameEsuBft922_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_270contigScaffold_270:74203..77877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LIP9
ProteomeIdEsuBft922_4
Protein domainsPTHR12951
Protein domainsIPR014756
Protein domainsIPR008015
Ownerapollo_admin@sb-roscoff.fr
Noteprotein unc-119 homolog a os:mus musculus gn:unc119 pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length630
Hectar predicted targeting categoryother localisation
Evalue3.88e-126
EggNOG OGsKOG4037@1|root,KOG4037@2759|Eukaryota
Ec32 ortholog descriptionGMP phosphodiesterase, delta subunit
Ec32 orthologEc-25_003230.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameUNC119
KEGG koko:K05291
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000922,GO:0001558,GO:0001932,GO:0001934,GO:0002119,GO:0002164,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006810,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007600,GO:0007601,GO:0007602,GO:0007610,GO:0007631,GO:0007635,GO:0008104,GO:0008150,GO:0008289,GO:0008361,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009653,GO:0009791,GO:0009893,GO:0009987,GO:0010171,GO:0010562,GO:0010604,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0019220,GO:0019222,GO:0022008,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030100,GO:0030154,GO:0030182,GO:0030308,GO:0030424,GO:0030516,GO:0030517,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0033036,GO:0033674,GO:0035869,GO:0040008,GO:0040011,GO:0040024,GO:0042221,GO:0042325,GO:0042327,GO:0042886,GO:0042953,GO:0042995,GO:0043005,GO:0043051,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043549,GO:0044085,GO:0044093,GO:0044421,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0044872,GO:0045171,GO:0045184,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045806,GO:0045859,GO:0045860,GO:0045926,GO:0045937,GO:0046662,GO:0048259,GO:0048261,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048640,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050767,GO:0050768,GO:0050770,GO:0050771,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050877,GO:0050896,GO:0050953,GO:0051049,GO:0051051,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051233,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051301,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0051960,GO:0051961,GO:0060255,GO:0060259,GO:0060271,GO:0060284,GO:0060627,GO:0061097,GO:0061098,GO:0061387,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070121,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090066,GO:0097458,GO:0098916,GO:0099536,GO:0099537,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:1900186,GO:1903047,GO:1903998,GO:2000026,GO:2000241,GO:2000369,GO:2001286,GO:2001287
Descriptionlipoprotein localization
COG categoryS
BRITEko00000,ko00001
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0035869
GO0030517
GO1900186
GO0051233
GO0007635
GO0008289
GO0005829
GO0040011
GO0042953
GO0061098
GO0043051
GO2001287
GO0042384
GO0046662
GO0007109
GO0030424
GO0045171
GO0007602
GO0007601
GO0005813
GO0007268
GO0000922
GO0030163
GO0040024
GO0010171
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft922_4aEsuBft922_4aEctocarpus subulatus male Bft15bgeneScaffold_270 74203..77877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_4a-0001EsuBft922_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_270 74203..77877 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_4a-0001-exonagat-exon-65546Ectocarpus subulatus male Bft15bexonScaffold_270 74203..74304 +
EsuBft922_4a-0001-exonagat-exon-65547Ectocarpus subulatus male Bft15bexonScaffold_270 74801..74923 +
EsuBft922_4a-0001-exonEsuBft922_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_270 75678..75755 +
EsuBft922_4a-0001-exonagat-exon-65549Ectocarpus subulatus male Bft15bexonScaffold_270 77011..77110 +
EsuBft922_4a-0001-exonagat-exon-65548Ectocarpus subulatus male Bft15bexonScaffold_270 77651..77877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_4a-0001-cdsEsuBft922_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_270 74203..74304 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft922_4a-0001 ID=EsuBft922_4a-0001|Name=EsuBft922_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=630bp|location=Sequence derived from alignment at Scaffold_270:74203..77877+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCAGATTTTTTGTGCGCGCTCTCCGCGAACAAATACCAGATCGA
GTTTCTCGAGTTTACCATCAGCGACTATGATACCAAGAACATAATTTTCA
TGGTGGGGAGGGACTACCCGCCTCCGATTGATCTTGACCTCGACTTGGGC
AGCCTGGACGAGAACGCGTACCGCCTCATCAAGTACGAGTTTTCGGAAGA
TGTTCTTCGGTTGCCGTCGATACAGACGTCACTGGTGTTTTCCGTGGGGG
AGCAGGAGGTGCCAAACTTTAGAATGGTGGAGAGACACTACTTTCGAGAC
CAGTTGATCAAGAGCTATGATTTTGGGTTCGGCTTTTGCATCCCTGCGAG
CACCAACACTTGGGACGCGGTCTACCAGGTTCCTCCGCTTGACGAGGACC
TAATCGAGGAAATGATAGCAAACCCGTTTGAGACCAAGTCGGACAGCTTT
TACTTTGTGGATGACGAGCTCATCATGCACAACAAGGCCAGCTACAAGTA
CGTCCCTGAGGACACCGCCCAGGCTAAAAAGAGCTATGAGGTGAGCTTCT
CCTGTTGCTCCAACGACAGCCCCCTGCCTCCTGCGCTAGCCCAGCGAGAT
GCTGCTGTACATGAACAACGCATCTCGTAA
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protein sequence of EsuBft922_4a-0001

>EsuBft922_4 ID=EsuBft922_4|Name=EsuBft922_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=209bp
MVSDFLCALSANKYQIEFLEFTISDYDTKNIIFMVGRDYPPPIDLDLDLG
SLDENAYRLIKYEFSEDVLRLPSIQTSLVFSVGEQEVPNFRMVERHYFRD
QLIKSYDFGFGFCIPASTNTWDAVYQVPPLDEDLIEEMIANPFETKSDSF
YFVDDELIMHNKASYKYVPEDTAQAKKSYEVSFSCCSNDSPLPPALAQRD
AAVHEQRIS
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mRNA from alignment at Scaffold_270:74203..77877+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft922_4a-0001 ID=EsuBft922_4a-0001|Name=EsuBft922_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3675bp|location=Sequence derived from alignment at Scaffold_270:74203..77877+ (Ectocarpus subulatus male Bft15b)
ATGGTTTCAGATTTTTTGTGCGCGCTCTCCGCGAACAAATACCAGATCGA
GTTTCTCGAGTTTACCATCAGCGACTATGATACCAAGAACATAATTTTCA
TGGTGAGAATCGTGCTGAAATGCGTAAGCGCACTGGTAGCGCCAAGCTTG
CTCGAACAGAGATGAGGCTCTCGAACATCTTGGCCGTGTTCTGCGTGACT
CCTACACTTCTGAATGTCAGCGACTACACGTATGTGCCCCTCCTTGTTTC
ATCGAGGCACTTTTCGCTGGCTGCGCGCGCGATTGGTGTGTTCAAACGAA
GCGCTAAACGAAAACCCGTGCAACCTGCAAACATGTCGGACCAGCGCCAT
GATCGCCACTGTACTCGCCATGAGACCATTAGGACATCACGATCCTTACT
CTTGGCAAAGGACACGCCATGTCTGATGCAACCACCAAACAAGCTACGGT
GCAATGAGTTTCGCTTGACGTCAATGCAAACATATGTTTCTCGGGCGCTC
TTTTCGTGGGTAGAGTTTGACCACGAGCCCATTTTTTCCGCGAGCTTTCA
TGAGAAATAGCAGCAGCAACAACTGCTGTGTACTAAATGATATAATAGGT
GGGGAGGGACTACCCGCCTCCGATTGATCTTGACCTCGACTTGGGCAGCC
TGGACGAGAACGCGTACCGCCTCATCAAGTACGAGTTTTCGGAAGATGTT
CTTCGGTTGCCGTCGATACAGGTGAGTCCTACTGGGGTGGCACTCAACAG
TCTTTCTATATGTTGTCGTGTTGTAGAGTAGCAACGCGCGTGCTTGTCTC
AAGGTCACTGCTGTTGGCGAATAACAGGTAGGTTTTCAACAGTCGGGACC
CGTTGGGTTGACTGACTTCTCGAGTACGTGTACCACGGGCTGGCTTGCCA
CTACCTTCGAGGGTCAAGCTTGCGCGTATGTATGTCGTTTTGATGTTCAC
CTTTGAAAAACGACGTGGGCGAATGCCGCAGAGTTCTCCAGCACGACACG
AAACTCGTGAAGTCCTCCGCCAGACAGCACTTGTCATTCTCGACAATTCA
ACAAATCAGGAGTGCGGACTTAGACAGAGAATCTCTTCGCACTTCCTCTG
GCATAACACCAGATTTCCGGGGGGAGACCAGGGGGTTTTGAGCCGTCCAG
AGCTGTTTTATAGAGCTGTCTTTGTACTACACCCGCCATACATTCGAGTG
TTCGGGGAAATTCGCTTTGACGGGCCACCGATTGCCAAACGCCCGGTGTA
GGTTGCATTGAAGCGCTCTACCTCTCGTGTCTGTGCTGAAAGGTAAATAT
CATGCTGAACTTCCTGCTGTATCGCGTATTCCACGTGATTCATCGGCCCG
CACCATCAGTGAAACCCCTGTACATGTCAAGAGAAATTGGATCTGGAATC
ACGGTTTCCAAAGCCTTACAATCGCTTCGTACATGACCTTGCTGTTCTTG
ATTATTTGTTGGTCGGGATGGGCAGACGTCACTGGTGTTTTCCGTGGGGG
AGCAGGAGGTGCCAAACTTTAGAATGGTGGAGAGACACTACTTTCGAGAC
CAGGTAAGGAGGGAACGTCCTCAAAGGAAATCGTAAGTCTTTGTGCGAGG
CGTAGCAAAGCGTAGCAAAGCGTATCAAAGCGTAGCAAAGCGTAGCAAAG
CGTAGCAAAGCGTAGCAAAGCGTAGCAAAGCGTAGCAAAACGCAGCGAAG
GTGTGGAGGCGCGTAATCGTGAATCCATGGGTCCGAGAGACCGGGCGAAC
AAAAACAAAATAGACTACGAAAGCGGGTGATATTTTGCATTGTTTCGGCC
TCAACAAGCATGATTTCTAACCTGTCGTTTGGGCAACGTTTCATGTGGCG
TATGAATGTGCGCCACGCCATTTCTTCTGGAAGTCGATTTTTACCCCTGT
CCGGTTTGTTCTTTTACATCCCAGCCGGGGTCACACATGAGGAAGATCAA
ACAGGAGGTTTCATTGTTTTTTTTGCACTCGTGCGTTGCAAACCTCTGTA
GTACTCGCGAGAAACAAACTGTCTTTTCATTCCCTCGCCAACGTTGAAAC
CGAACGTTATTGTGTGCTCACGAAAATGTACGCCCTAAAAATTGGTTGGA
CACAGCGCGGGAACAATCCCAGCTCGTGTGACTTAGCCGTGGCCGTGGTT
CGAACGCACGCTCAAGCGCCAGACGGTTGCGCGCCTACCAACTACACCAC
TCGTCACCTAGTCTATTGAAACGCGTATAGCATGTTCCGACCGTATGGTC
TTGCTTTCTCTGCGGTATAGCTACGATCTAGGTCACAGCATCAGCGTATA
CTGTAGTTTCTCTGCGAATTTTCACGAAAAGTGTCAAGCAACCCTGCTTT
CCTCGTCAACTATTCAGTCGAGTGTGGGTGCTCACAACAAGCAGTTTCTC
ATCAGCAATGTCATGCCGGGATAGATCCCCGAGCTCTTCGCAATCCAACG
TTTAGATAGCACCGTTCGATCATGGCGGTGACCCATCACGAGTGCTCTGT
AAATCAAATGTCGGAGAGACGGAGAAGGTGCTGTGCGACCTTTCATACTA
TGCAGAGAAAGTAGCCCTGTTGGTTTTTCTTGTGCGTTATGCTGTTTGTG
GTCGACTCGTGCGTCAAACGGCTAGAATGCGTAGACGAGCCACCATTATT
GACGAATGAACGGAGCAACGGAAACAAACCTGGGTATGCCTGCTGTCTGC
GAAGGCATACGGTTTCCTTGCGTACGTCTTTTCCATATCACCTACGTTCT
AACACTGGTCTTGCTTCCTGCCCTTGCACGTTACTCGTATTCTGAACCAA
ACAACTAGTTGATCAAGAGCTATGATTTTGGGTTCGGCTTTTGCATCCCT
GCGAGCACCAACACTTGGGACGCGGTCTACCAGGTTCCTCCGCTTGACGA
GGACCTAAGTGAGTGCATCATTGTTCCTGTCGTCGTCGTAGTTGTTGTTG
CTGTCGTTGTTGTTGTTGCCGCTGCTGTCCGGTGTCTCCATAGCGTCCAG
ATTTGTTGCCGATTTCCCCGCTTCATGAGGATTTTGAGGATGTTAGGGAG
AGCGGTATTGCTTTCAAAATGTTCATTCTTGGATGGAACCTTGCGAAAAT
ATCTGCCTTGAGCCGTATTCCGGAGTATTGCCCAACCGATCCCAGCTTGG
GCGGGAAGGTTAAGGTTGCATGTCGTGTTGCTCTTTTTCTATGTCATATG
TCCCTCCCCTGAAAATGGTCACTTTCAGTCGGGACACTGCTGTGGGGAAC
CATCGTCTAGCACATCCACGCGTCAACCAAATTCTGACTGAGACATGTTT
GCTGTTTGAGAGTTCTTAGCATCTAGGACAAGAAGTCATTGTGGCGGTTT
CCTGTTCGATGTTCCCTACCTGCTAACATCCTCGTTCGTAACCCTGCCAC
CGTCATGTTTTCGCCCACACAATGATAAAATACATCAACACAACAAAGTC
GAGGAAATGATAGCAAACCCGTTTGAGACCAAGTCGGACAGCTTTTACTT
TGTGGATGACGAGCTCATCATGCACAACAAGGCCAGCTACAAGTACGTCC
CTGAGGACACCGCCCAGGCTAAAAAGAGCTATGAGGTGAGCTTCTCCTGT
TGCTCCAACGACAGCCCCCTGCCTCCTGCGCTAGCCCAGCGAGATGCTGC
TGTACATGAACAACGCATCTCGTAA
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Coding sequence (CDS) from alignment at Scaffold_270:74203..77877+

>EsuBft922_4a-0001 ID=EsuBft922_4a-0001|Name=EsuBft922_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=630bp|location=Sequence derived from alignment at Scaffold_270:74203..77877+ (Ectocarpus subulatus male Bft15b)
ATGGTTTCAGATTTTTTGTGCGCGCTCTCCGCGAACAAATACCAGATCGA
GTTTCTCGAGTTTACCATCAGCGACTATGATACCAAGAACATAATTTTCA
TGGTGGGGAGGGACTACCCGCCTCCGATTGATCTTGACCTCGACTTGGGC
AGCCTGGACGAGAACGCGTACCGCCTCATCAAGTACGAGTTTTCGGAAGA
TGTTCTTCGGTTGCCGTCGATACAGACGTCACTGGTGTTTTCCGTGGGGG
AGCAGGAGGTGCCAAACTTTAGAATGGTGGAGAGACACTACTTTCGAGAC
CAGTTGATCAAGAGCTATGATTTTGGGTTCGGCTTTTGCATCCCTGCGAG
CACCAACACTTGGGACGCGGTCTACCAGGTTCCTCCGCTTGACGAGGACC
TAATCGAGGAAATGATAGCAAACCCGTTTGAGACCAAGTCGGACAGCTTT
TACTTTGTGGATGACGAGCTCATCATGCACAACAAGGCCAGCTACAAGTA
CGTCCCTGAGGACACCGCCCAGGCTAAAAAGAGCTATGAGGTGAGCTTCT
CCTGTTGCTCCAACGACAGCCCCCTGCCTCCTGCGCTAGCCCAGCGAGAT
GCTGCTGTACATGAACAACGCATCTCGTAA
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