EsuBft922_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft922_2a-0001
Unique NameEsuBft922_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_270contigScaffold_270:57247..58080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog400682.PAC_15703983
ProteomeIdEsuBft922_2
Protein domainsSSF56672
Protein domainsG3DSA
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length834
Hectar predicted targeting categoryother localisation
Evalue1.24e-57
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryOU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft922_2aEsuBft922_2aEctocarpus subulatus male Bft15bgeneScaffold_270 57247..58080 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_2a-0001-exonEsuBft922_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_270 57247..58080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_2a-0001-cdsEsuBft922_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_270 57247..58080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft922_2a-0001EsuBft922_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_270 57247..58080 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft922_2a-0001 ID=EsuBft922_2a-0001|Name=EsuBft922_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=834bp|location=Sequence derived from alignment at Scaffold_270:57247..58080- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAAATGGCTAGCCACATTGATACAGTAGCGGGTGCAAAATTCAT
TACTGTATGTGACGTACAAAGCGCGTACCACCAAATACCAATCGCCGAAG
AAGAACAAGACAAAACGGCATTCGTAACACGAAATGGGAAATGGGTTTTC
AAAAGACTTCCCTTCGGGATTGCTAACGCTCCCTTCCTCTTTCAACGTAC
AATGGCGTTGGCGTTTGCACATTTTGGTCCCAAATCCGGGCTCCTGGTGT
ACATGGATGACTTAATCTGTTGTTCATCGACATGGGAGGGACACTTAAAA
CTGTTGGAAAACACGTTCCAAGCTTTGCAAGCAGCAGGGCTCACCTTGAA
ACCATCCAAAGTACAATTCGGACCACAAGAGGTGAAGTACTTGGGACACA
TTCCCTCATCAGATGGAATACGTCTTGGTGAGGATCGGATAAAAGCGATA
CTAGATATACCAACGCCAACAAACATCAAAGAGCTACGATCAGTGCTGGG
GACAGTCAACTATGTGCGGAAGTTCATTCCAAACTTGGCGACAGTCACCG
CACCCCTGGTTGACCTCACGAAAAAAGAGGCAATGAAGTCAGTGGCAAAA
CGTTGGGGACCGGAGCACGATGAAGCGTTTGCGGAAGTAAAGAAATTGCT
CGCCGCAGCTCCTCTGTTAAACTTTCCAGACTTTTCTAAAGAATTTGTAA
TTCATGTCGATGCTTCTAATGCTGGTACAGGAGCATTCCTAGCCCAAGAA
GATGGTGACGACCTGAAGATCATAGCATACTTTAGTCAGCGTTTCAACAA
AAGCCAACTGCACTACTCAGCAACCATGAAATAA
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protein sequence of EsuBft922_2a-0001

>EsuBft922_2 ID=EsuBft922_2|Name=EsuBft922_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=277bp
MPEMASHIDTVAGAKFITVCDVQSAYHQIPIAEEEQDKTAFVTRNGKWVF
KRLPFGIANAPFLFQRTMALAFAHFGPKSGLLVYMDDLICCSSTWEGHLK
LLENTFQALQAAGLTLKPSKVQFGPQEVKYLGHIPSSDGIRLGEDRIKAI
LDIPTPTNIKELRSVLGTVNYVRKFIPNLATVTAPLVDLTKKEAMKSVAK
RWGPEHDEAFAEVKKLLAAAPLLNFPDFSKEFVIHVDASNAGTGAFLAQE
DGDDLKIIAYFSQRFNKSQLHYSATMK
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mRNA from alignment at Scaffold_270:57247..58080-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft922_2a-0001 ID=EsuBft922_2a-0001|Name=EsuBft922_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=834bp|location=Sequence derived from alignment at Scaffold_270:57247..58080- (Ectocarpus subulatus male Bft15b)
ATGCCGGAAATGGCTAGCCACATTGATACAGTAGCGGGTGCAAAATTCAT
TACTGTATGTGACGTACAAAGCGCGTACCACCAAATACCAATCGCCGAAG
AAGAACAAGACAAAACGGCATTCGTAACACGAAATGGGAAATGGGTTTTC
AAAAGACTTCCCTTCGGGATTGCTAACGCTCCCTTCCTCTTTCAACGTAC
AATGGCGTTGGCGTTTGCACATTTTGGTCCCAAATCCGGGCTCCTGGTGT
ACATGGATGACTTAATCTGTTGTTCATCGACATGGGAGGGACACTTAAAA
CTGTTGGAAAACACGTTCCAAGCTTTGCAAGCAGCAGGGCTCACCTTGAA
ACCATCCAAAGTACAATTCGGACCACAAGAGGTGAAGTACTTGGGACACA
TTCCCTCATCAGATGGAATACGTCTTGGTGAGGATCGGATAAAAGCGATA
CTAGATATACCAACGCCAACAAACATCAAAGAGCTACGATCAGTGCTGGG
GACAGTCAACTATGTGCGGAAGTTCATTCCAAACTTGGCGACAGTCACCG
CACCCCTGGTTGACCTCACGAAAAAAGAGGCAATGAAGTCAGTGGCAAAA
CGTTGGGGACCGGAGCACGATGAAGCGTTTGCGGAAGTAAAGAAATTGCT
CGCCGCAGCTCCTCTGTTAAACTTTCCAGACTTTTCTAAAGAATTTGTAA
TTCATGTCGATGCTTCTAATGCTGGTACAGGAGCATTCCTAGCCCAAGAA
GATGGTGACGACCTGAAGATCATAGCATACTTTAGTCAGCGTTTCAACAA
AAGCCAACTGCACTACTCAGCAACCATGAAATAA
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Coding sequence (CDS) from alignment at Scaffold_270:57247..58080-

>EsuBft922_2a-0001 ID=EsuBft922_2a-0001|Name=EsuBft922_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=834bp|location=Sequence derived from alignment at Scaffold_270:57247..58080- (Ectocarpus subulatus male Bft15b)
ATGCCGGAAATGGCTAGCCACATTGATACAGTAGCGGGTGCAAAATTCAT
TACTGTATGTGACGTACAAAGCGCGTACCACCAAATACCAATCGCCGAAG
AAGAACAAGACAAAACGGCATTCGTAACACGAAATGGGAAATGGGTTTTC
AAAAGACTTCCCTTCGGGATTGCTAACGCTCCCTTCCTCTTTCAACGTAC
AATGGCGTTGGCGTTTGCACATTTTGGTCCCAAATCCGGGCTCCTGGTGT
ACATGGATGACTTAATCTGTTGTTCATCGACATGGGAGGGACACTTAAAA
CTGTTGGAAAACACGTTCCAAGCTTTGCAAGCAGCAGGGCTCACCTTGAA
ACCATCCAAAGTACAATTCGGACCACAAGAGGTGAAGTACTTGGGACACA
TTCCCTCATCAGATGGAATACGTCTTGGTGAGGATCGGATAAAAGCGATA
CTAGATATACCAACGCCAACAAACATCAAAGAGCTACGATCAGTGCTGGG
GACAGTCAACTATGTGCGGAAGTTCATTCCAAACTTGGCGACAGTCACCG
CACCCCTGGTTGACCTCACGAAAAAAGAGGCAATGAAGTCAGTGGCAAAA
CGTTGGGGACCGGAGCACGATGAAGCGTTTGCGGAAGTAAAGAAATTGCT
CGCCGCAGCTCCTCTGTTAAACTTTCCAGACTTTTCTAAAGAATTTGTAA
TTCATGTCGATGCTTCTAATGCTGGTACAGGAGCATTCCTAGCCCAAGAA
GATGGTGACGACCTGAAGATCATAGCATACTTTAGTCAGCGTTTCAACAA
AAGCCAACTGCACTACTCAGCAACCATGAAATAA
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