Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft921_2 |
| Protein domains | IPR011990 |
| Protein domains | Coil |
| Protein domains | SSF48452 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 8 |
| Length | 196 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-01_004110.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft921_2a-0001 ID=EsuBft921_2a-0001|Name=EsuBft921_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1968bp|location=Sequence derived from alignment at Scaffold_360:233256..237836+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCATTGGCGTGGACGAAGGGGGATTGGAGAGCCAAGAAGCAGCTCGA
GAAATCGCTCAGTTCCGATCAGGATGACCACGTCACGCGGTTCGCGCTCG
TGCGTTTGCTCGCGAGCAAGGCGGAACCTGCTGCCGCTGAGGAACTCCTA
CGTGGACCTGGGGTCGAAGACAGGCTGCTGGCGGACCCGAACACTCGTGT
GGCCATGCTTTCATCGCTGGGAGGGGCCTATTTAATGTTGTGGCGGGCTC
GGGGAGAAACAACATCCGAGTCAACCGGCAGCAGGGCCGGGGGCGGTCAG
GGAAAGGATACCAGAGAAGTGGTCGAGATCAGATTGGACGTGTCATCGGA
GAGGACTGATTTGCTTCATCGGGCGCAGCATTTCCTGGAAGAGGCTCTGA
TGTCTCCCGAGAACTTGAACGACCCTGCCATACGAGCTCAAGTCGGTGAG
AGAGGAAAATGGAAGAGCGTTCTCCGTTTGCCAGGACTTGCACGCTTGCC
TCCATCGCGATTATCATTGTTTCGCCCTGACATCCGTTCCCTCCTCCATC
CCGACTGCTGTGCTTTCAAAAAAGCTTTCTGCAAAGAAGCACGTGGAGAC
TACAAGGAAGCCCTGACCCTGTACGCCAGCATTATCTCCGACTCGGCGCT
GTCGCCGGGGGCCTCTGCCGTAATCTTCCGCACTTCCGTGCTGCTGGCCT
ATGTCGGGCGGTTAGACGAGTGTGTCCGGTATTTGGAGTTTATCGAGGGA
CAGCCACCGAAGGGGTGTAGTATGCTTCTGGTACAAGCGTTACTGTACAC
GTGCTACGTGTCCCTAGGCCTCGAGGTGAAGGTATCTCGGCGTCTGATCA
CCCTCCGGGAGGCGTACAACGACGAGTACACCGCTGGTCGGATGGGGCGA
GGGTTTAGCCGGGACGAGATTCCATGGGATCGACTGCCTGGGTGGTTTTA
TATGTGGAGGGAATTGGGGGTCGAGAGCATTCGCGCCGGTAACTACTACG
CGGGCATACAGATGTTTTCACAAGCGACGCTGCAGCGACAGGATCCCGAG
ACCATGGTCTGCACCGCCGAGATGCTTTGGGTTTTAGGCGAACCAAAGCG
CGCCTTGGCGCTGTGTGAGAGGGCGTACGCAGCCGATCCACTGCACATTG
GAGCACAGCGGCGACTGTCCGGTTGGGCGCCCCAGAAGTGGAAGGAAAGA
ATTGTCAAGGAGGAGGAACGGCGCGAAGCTATTACCGAGATGCGGCGGCT
GGCTGACTTGTCGGACAAAAAGGCAGACGCCATGCTCGCTCGACGACGGC
GCAGGGAGAAGGCTCGGTTCCTGCGCGCCTGGCGACGCCTTCACGACAAG
CACAAGCATCGCAGAAGTACAAGCACAGAGGGCGAGGAGGCACAGACGGG
GAGGAGGAGGCGGGACGACACCACTACCTCCAAGAGCAGCGGAAGCGATA
AGTTCTCGTGGAGTGACTCGTCGTCCTCACGCTCCGGCTCGTCTTCTTCG
TCAGGTTCGGCAAGATTTTCCCACTCCGGTGGCAGTTCGTCGAGAAGCGA
TCGTTCTTCGTCGTTCGCCTCCTCTCTGTCGGCGAAAGAACAAGTGGAGC
GCTCAGTCGATGAGAAGTCGTCGGCATCCTCCGCGCCCGTCCCCGAACCT
TTCCCCGTGCCTTCGGCGGCCGAGGCTGCGGAAGCCGGCCGATCAAACTT
CTCGGCCTGCTTCCGAGCTGAAACGGAGCGCGCGATGCGACGAAAGCGAG
AGGCCACTGAACACCACGGGGAGATGCCGATGGACATGGCGTCGGTGAAA
GTCGCAGCGGAGGCGATTCACGAGGCCATGCGCGGTGGTGGTTGGAAGAC
GGGCACGAACGGCGCCCGCAGCGGCTTTGCAACGCACGAGATGCGTGCAC
TGGCGCGTTTCCAGTGCCATAGAAAAACCCACGAGGCGAAAATCACCAAG
GTTGTCTACGGTTCTTAG back to topprotein sequence of EsuBft921_2a-0001 >EsuBft921_2 ID=EsuBft921_2|Name=EsuBft921_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=655bp
MSLAWTKGDWRAKKQLEKSLSSDQDDHVTRFALVRLLASKAEPAAAEELL
RGPGVEDRLLADPNTRVAMLSSLGGAYLMLWRARGETTSESTGSRAGGGQ
GKDTREVVEIRLDVSSERTDLLHRAQHFLEEALMSPENLNDPAIRAQVGE
RGKWKSVLRLPGLARLPPSRLSLFRPDIRSLLHPDCCAFKKAFCKEARGD
YKEALTLYASIISDSALSPGASAVIFRTSVLLAYVGRLDECVRYLEFIEG
QPPKGCSMLLVQALLYTCYVSLGLEVKVSRRLITLREAYNDEYTAGRMGR
GFSRDEIPWDRLPGWFYMWRELGVESIRAGNYYAGIQMFSQATLQRQDPE
TMVCTAEMLWVLGEPKRALALCERAYAADPLHIGAQRRLSGWAPQKWKER
IVKEEERREAITEMRRLADLSDKKADAMLARRRRREKARFLRAWRRLHDK
HKHRRSTSTEGEEAQTGRRRRDDTTTSKSSGSDKFSWSDSSSSRSGSSSS
SGSARFSHSGGSSSRSDRSSSFASSLSAKEQVERSVDEKSSASSAPVPEP
FPVPSAAEAAEAGRSNFSACFRAETERAMRRKREATEHHGEMPMDMASVK
VAAEAIHEAMRGGGWKTGTNGARSGFATHEMRALARFQCHRKTHEAKITK
VVYGS back to topmRNA from alignment at Scaffold_360:233256..237836+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft921_2a-0001 ID=EsuBft921_2a-0001|Name=EsuBft921_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4581bp|location=Sequence derived from alignment at Scaffold_360:233256..237836+ (Ectocarpus subulatus male Bft15b)
ATGTCATTGGCGTGGACGAAGGGGGATTGGAGAGCCAAGAAGCAGCTCGA
GAAATCGCTCAGTTCCGATCAGGATGACCACGTCACGCGGTTCGCGCTCG
TGCGTTTGCTCGCGAGCAAGGCGGAACCTGCTGCCGCTGAGGTGAGTCCT
GCGTTGGAGGCGGTCACACAGCAGTGGGAGATTTCAATGAATGATTAGAA
TTGGGAACCAACCTTGCAGCAACCATCGCATCCGACATTCGGACGTTTGG
GGCGTGGGGTCGAATTCGGCGCGTTCACACGCAAAAAAAGAAGCTTTCTT
TGACAACAGCAGTGCAGTCGATGCATGGGAAATCAAATACCTATGTGTTG
TTCGCGTGTGCGCATCAAATTTGATTTCACGGTCGACGAGGGAAAGTAGC
GGCTGCCGTGCTCGTCATGCGTTCGTTCGCAGAAATTTTACCGTAAGGTA
TTTTCTACAGACCGACGCCCAGACCAAATACGTTGGTACAAGCAATATCT
AAGCCACACAAATTACAACACCACGTGGTCTGTGATACGGACACCGTACA
ATGTGTGTGTGTACAGAGAAGATGTACATATGGTACTCCGTATGCCGTAA
CCCAGTGCATAGAAGACGATACGCTACCAAGGTCACGTCGCAACCTCTTA
GGTTGGGCGCGCTCAACTCCCTACGACCTACTGGTTCCTCCGGCCAACGA
TCTGTGTAATCTATAGTAGACTACTGCCCCACGCAGCCTACAGGTCATAA
ATAAACATGTTCTCATTCGCATTCCGTAGAATGTGTTTGGCCTAATCTAC
TGCAGTTGTACACATTGGACCACGGCGTACCTGGAGTCCAGCGGGTAACT
GCAGTAGTAAACAACAGAGTCTATAAATTGTTAATTGAGCAACGTGTCAC
GAGTCGGAACTTCAGACACCACCGCCAACACCTTTTTTTCGCCACAGTCT
GTGCACGCCTTAACGTGCGATCGGTGTCCTCGTCTACTGCATAGTAGTTA
CATGACATGACTCTCCTAACCAGGTCATGTCTACGTGTTCACGATATCGT
AACAGGAACTCCTACGTGGACCTGGGGTCGAAGACAGGCTGCTGGCGGAC
CCGAACACTCGTGTGGCCATGCTTTCATCGCTGGGAGGGGCCTATTTAAT
GTTGTGGCGGGCTCGGGGAGAAACAACATCCGAGTCAACCGGCAGCAGGG
CCGGGGGCGGTCAGGGAAAGGATACCAGAGAAGTGGTCGAGATCAGATTG
GACGTGTCATCGGAGAGGACTGATTTGCTTCATCGGGCGCAGCATTTCCT
GGAAGAGGCTCTGATGTCTCCCGAGAACTTGAACGACCCTGCCATACGAG
CTCAAGTCGGTGAGAGAGGAAAATGGAAGAGCGTTCTCCGTTTGCCAGGA
CTTGCACGCTTGCCTCCATCGTACGTCAGATATATCAGTAGCGGTGTATA
TTCCACTAGGGTTAGTCAACAACGGGTAGCTTGCCCGCAAGCTATGCGCT
GGGTGGACTTGTTCATGCAACCAGCGAAACTGGCCGTTTGTTCTCTCGCG
TAGGCGATTATCATTGTTTCGCCCTGACATCCGTTCCCTCCTCCATCCCG
ACTGCTGTGCTTTCAAAAAAGCTTTCTGCAAAGAAGCACGTGGAGACTAC
AAGGAAGCCCTGACCCTGTACGCCAGCATTATCTCCGACTCGGCGCTGTC
GCCGGGGGCCTCTGCCGTAATCTTCCGCACTTCCGTGCTGCTGGCCTATG
TCGGGCGGTTAGACGAGGTCAGCATCTATGTAGCTTCGTCGTATCGTTGA
CAAAAGGATGAAAGGTTGAAGCACCTACCACGCTTGCTCTTGTCTCGGCG
CTGACACGTTTTTATTGGAAACTCTTGACGCTGCTCGGAACACTGGTTAC
TCTGTTCCGGGTAGCTTCCGAAGCTTGTCCTCGAAGAGAATATCCCCGTG
GATTGAAAACCGTTGAACTCCCTCGGTTGAACCTCATGCAAAAGAGCACG
GGCGAATTTCTATTCCATGGGAGTTCGAGCTTTTTGGGTAGATATGTCGT
TGTCTCTCAGAAAGCAGTGAGTATGACAAACAACACCGCCGCCGCCCCTT
TACTTCCAATATCTTGTCCTTGACCGCCAGTGTGTCCGGTATTTGGAGTT
TATCGAGGGACAGCCACCGAAGGGGTGTAGTATGCTTCTGGTACAAGCGT
TACTGTACACGTGCTACGTGTCCCTAGGCCTCGAGGTGAAGGTATCTCGG
CGTCTGATCACCCTCCGGGAGGCGTACAACGACGAGTACACCGCTGGTCG
GATGTGAGTCGTGGTGTTCCAACGAATCTACCGAGGCCAGCGCGGTCTGT
TCTCCTGTACGAATACCGCAGTTTCACGCCACAGGTACATAGGTGCCGTT
TCGAACACACTTCAACGCACTCCCTGGCACGATCGCAATCTTTCTTATTC
GGGGTTTTGCGTGCGAGCCTCTTGAGTCGAGCCCGAAGATGCAACACGGT
GCATCAGGGACACAATGCGTGGCCCTCACGCAGGGACACCCATCCTTCGA
CCCTCACTCTCCCTCTTTTACGTCGCGAACGTTCCTACATCTACAGGGGG
CGAGGGTTTAGCCGGGACGAGATTCCATGGGATCGACTGCCTGGGTGGTT
TTATATGTGGAGGGAATTGGGGGTCGAGAGCATTCGCGCCGGTAACTACT
ACGCGGGCATACAGATGTGAGTTTTCTGCCCATCGCAAGAAGCTTTCTTG
TTGCAAACAACCAGCACGTATCGGAGCGGTTGGTTTCACGCCTTGCTGTC
GAAAAGAGAGGTCTGCTCAGTCTACCGTGCTCGGAGTGCGCCACCGTCTT
ACGCGCATGTTGTGCCAATCGCGCTCAGAACAGGTGCTTCAGGCTTGCCT
CTCTCCTTGAACGATGCAGGTTTTCACAAGCGACGCTGCAGCGACAGGAT
CCCGAGACCATGGTCTGCACCGCCGAGATGCTTTGGGTTTTAGGCGAACC
AAAGGTGATTTGTTGCTTGCACACCAAACTGCCTCTTCTTGTTCTCGGCG
AGTGAAGAGCCATTGATGACCTGCCTGCCTGAAAGCAGTGGGTTGTTATG
ATATGTACAGGTAGTCGCGACACGGTTAATAATACTTTGGAGCCATGCTT
TTCGGCATTGCGCATGTGCTTAGCTCACAAGATCGCGTGTGACTGTTGGT
ATCCAGGATCAGTTGACATAACGTCACCTGTACCGAGAACACTACCTGTA
ACAATAGTTCACTATGCCAGCCTCTTTCGGTTGTCGGCAATCCTAGACAT
AAATGCAACACTCTTTCTTCGTTCTTCCTCTGTACCAAGCGCGCCTTGGC
GCTGTGTGAGAGGGCGTACGCAGCCGATCCACTGCACATTGGAGCACAGC
GGCGACTGTCCGGTTGGGCGCCCCAGAAGTGGAAGGAAAGAATTGTCAAG
GAGGTGAGCGATTTGGAAGAACTTACTGTCACGTGGTTTTCTACCCCCTT
TGGTTTTGTTCCCTTGCTTTTTCGTTCGTGTCAAAATCAAGACAAAAGAA
CTCATGAGCAAACCTCCACATGTGGTGCAGTGATTGTCGGCAGCGTCGCC
CTTGCCTGATCTTGCGTGCATCTGTCCAATCGTTTGGCCGCCAGTGGTGG
TGCAGCTGGTGGTTCGTCGACACCACGTTTGTGGTGAAGTTGTCCATGCA
GCCTAGACCGTTGCCCCTTTCGACAGCATTACTGCCACCGGTATCAATGG
CTGCGATGTATGTTTTTCTCTCAAGATGTTATCTCGCCCGCCCCTCCGCT
TCTCAACTCACATGTGTCAAATCAGGAGGAACGGCGCGAAGCTATTACCG
AGATGCGGCGGCTGGCTGACTTGTCGGACAAAAAGGCAGACGCCATGCTC
GCTCGACGACGGCGCAGGGAGAAGGCTCGGTTCCTGCGCGCCTGGCGACG
CCTTCACGACAAGCACAAGCATCGCAGAAGTACAAGCACAGAGGGCGAGG
AGGCACAGACGGGGAGGAGGAGGCGGGACGACACCACTACCTCCAAGAGC
AGCGGAAGCGATAAGTTCTCGTGGAGTGACTCGTCGTCCTCACGCTCCGG
CTCGTCTTCTTCGTCAGGTTCGGCAAGATTTTCCCACTCCGGTGGCAGTT
CGTCGAGAAGCGATCGTTCTTCGTCGTTCGCCTCCTCTCTGTCGGCGAAA
GAACAAGTGGAGCGCTCAGTCGATGAGAAGTCGTCGGCATCCTCCGCGCC
CGTCCCCGAACCTTTCCCCGTGCCTTCGGCGGCCGAGGCTGCGGAAGCCG
GCCGATCAAACTTCTCGGCCTGCTTCCGAGCTGAAACGGAGCGCGCGATG
CGACGAAAGCGAGAGGCCACTGAACACCACGGGGAGATGCCGATGGACAT
GGCGTCGGTGAAAGTCGCAGCGGAGGCGATTCACGAGGCCATGCGCGGTG
GTGGTTGGAAGACGGGCACGAACGGCGCCCGCAGCGGCTTTGCAACGCAC
GAGATGCGTGCACTGGCGCGTTTCCAGTGCCATAGAAAAACCCACGAGGC
GAAAATCACCAAGGTTGTCTACGGTTCTTAG back to topCoding sequence (CDS) from alignment at Scaffold_360:233256..237836+ >EsuBft921_2a-0001 ID=EsuBft921_2a-0001|Name=EsuBft921_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1968bp|location=Sequence derived from alignment at Scaffold_360:233256..237836+ (Ectocarpus subulatus male Bft15b)
ATGTCATTGGCGTGGACGAAGGGGGATTGGAGAGCCAAGAAGCAGCTCGA
GAAATCGCTCAGTTCCGATCAGGATGACCACGTCACGCGGTTCGCGCTCG
TGCGTTTGCTCGCGAGCAAGGCGGAACCTGCTGCCGCTGAGGAACTCCTA
CGTGGACCTGGGGTCGAAGACAGGCTGCTGGCGGACCCGAACACTCGTGT
GGCCATGCTTTCATCGCTGGGAGGGGCCTATTTAATGTTGTGGCGGGCTC
GGGGAGAAACAACATCCGAGTCAACCGGCAGCAGGGCCGGGGGCGGTCAG
GGAAAGGATACCAGAGAAGTGGTCGAGATCAGATTGGACGTGTCATCGGA
GAGGACTGATTTGCTTCATCGGGCGCAGCATTTCCTGGAAGAGGCTCTGA
TGTCTCCCGAGAACTTGAACGACCCTGCCATACGAGCTCAAGTCGGTGAG
AGAGGAAAATGGAAGAGCGTTCTCCGTTTGCCAGGACTTGCACGCTTGCC
TCCATCGCGATTATCATTGTTTCGCCCTGACATCCGTTCCCTCCTCCATC
CCGACTGCTGTGCTTTCAAAAAAGCTTTCTGCAAAGAAGCACGTGGAGAC
TACAAGGAAGCCCTGACCCTGTACGCCAGCATTATCTCCGACTCGGCGCT
GTCGCCGGGGGCCTCTGCCGTAATCTTCCGCACTTCCGTGCTGCTGGCCT
ATGTCGGGCGGTTAGACGAGTGTGTCCGGTATTTGGAGTTTATCGAGGGA
CAGCCACCGAAGGGGTGTAGTATGCTTCTGGTACAAGCGTTACTGTACAC
GTGCTACGTGTCCCTAGGCCTCGAGGTGAAGGTATCTCGGCGTCTGATCA
CCCTCCGGGAGGCGTACAACGACGAGTACACCGCTGGTCGGATGGGGCGA
GGGTTTAGCCGGGACGAGATTCCATGGGATCGACTGCCTGGGTGGTTTTA
TATGTGGAGGGAATTGGGGGTCGAGAGCATTCGCGCCGGTAACTACTACG
CGGGCATACAGATGTTTTCACAAGCGACGCTGCAGCGACAGGATCCCGAG
ACCATGGTCTGCACCGCCGAGATGCTTTGGGTTTTAGGCGAACCAAAGCG
CGCCTTGGCGCTGTGTGAGAGGGCGTACGCAGCCGATCCACTGCACATTG
GAGCACAGCGGCGACTGTCCGGTTGGGCGCCCCAGAAGTGGAAGGAAAGA
ATTGTCAAGGAGGAGGAACGGCGCGAAGCTATTACCGAGATGCGGCGGCT
GGCTGACTTGTCGGACAAAAAGGCAGACGCCATGCTCGCTCGACGACGGC
GCAGGGAGAAGGCTCGGTTCCTGCGCGCCTGGCGACGCCTTCACGACAAG
CACAAGCATCGCAGAAGTACAAGCACAGAGGGCGAGGAGGCACAGACGGG
GAGGAGGAGGCGGGACGACACCACTACCTCCAAGAGCAGCGGAAGCGATA
AGTTCTCGTGGAGTGACTCGTCGTCCTCACGCTCCGGCTCGTCTTCTTCG
TCAGGTTCGGCAAGATTTTCCCACTCCGGTGGCAGTTCGTCGAGAAGCGA
TCGTTCTTCGTCGTTCGCCTCCTCTCTGTCGGCGAAAGAACAAGTGGAGC
GCTCAGTCGATGAGAAGTCGTCGGCATCCTCCGCGCCCGTCCCCGAACCT
TTCCCCGTGCCTTCGGCGGCCGAGGCTGCGGAAGCCGGCCGATCAAACTT
CTCGGCCTGCTTCCGAGCTGAAACGGAGCGCGCGATGCGACGAAAGCGAG
AGGCCACTGAACACCACGGGGAGATGCCGATGGACATGGCGTCGGTGAAA
GTCGCAGCGGAGGCGATTCACGAGGCCATGCGCGGTGGTGGTTGGAAGAC
GGGCACGAACGGCGCCCGCAGCGGCTTTGCAACGCACGAGATGCGTGCAC
TGGCGCGTTTCCAGTGCCATAGAAAAACCCACGAGGCGAAAATCACCAAG
GTTGTCTACGGTTCTTAG back to top
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