EsuBft920_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft920_9a-0001
Unique NameEsuBft920_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:584770..588966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2850.Phatr45112
ProteomeIdEsuBft920_9
Protein domainsSSF46785
Protein domainsIPR027725
Protein domainsIPR011991
Protein domainsIPR000232
Ownerapollo_admin@sb-roscoff.fr
Noteheat stress transcription factor a-2e os:oryza sativa japonica gn:hsfa2e pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2836|Bacillariophyta
Length2652
Hectar predicted targeting categoryother localisation
Evalue6.67e-36
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,2XCJ0@2836|Bacillariophyta
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-01_002650.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionheat shock factor
COG categoryK
Cross References
External references for this mRNA
DatabaseAccession
GO0010468
GO0048530
GO1901700
GO0005774
GO0001101
GO0009958
GO0009408
GO0005515
GO0009733
GO0048527
GO0003700
GO0042802
GO0003824
GO0007034
GO0008152
GO0043565
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft920_9aEsuBft920_9aEctocarpus subulatus male Bft15bgeneScaffold_91 584770..588966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_9a-0001EsuBft920_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 585740..588712 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_9a-0001-exonEsuBft920_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 584770..586855 -
EsuBft920_9a-0001-exonagat-exon-48740Ectocarpus subulatus male Bft15bexonScaffold_91 587770..587876 -
EsuBft920_9a-0001-exonagat-exon-48739Ectocarpus subulatus male Bft15bexonScaffold_91 588508..588966 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_9a-0001-exonagat-three_prime_utr-23080Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 584770..585739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_9a-0001-cdsEsuBft920_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 585740..586855 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_9a-0001-exonagat-five_prime_utr-15011Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_91 588713..588966 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft920_9a-0001 ID=EsuBft920_9a-0001|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2652bp|location=Sequence derived from alignment at Scaffold_91:584770..588966- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCCACACGACAACGCACAACGCTCTCAGCCTCTGGTCAGGACACCTCGG
ACAGACATAATCGTGCCACACACAGCAGAACCTGCGACGAGTTCAGCACA
CAGACAGCTGTTTCGTGAAGAGCACCTCGCTTAGCACCGGCCTTGTTTCA
TCAAGCTAGGAACTTGTAGAAGTCAAGCTCTCCTTAGCAGACGGACAGCA
AGCAGCACGAAGAGCAACAAGAGCAAACGAGCACACGGACAAAAGGGGGA
CACGATGCCGGCTGACGGATCTTACACGATGCGGGCGCAGCCCCGGCGAC
GGAAGGACGTGAAGGATGAGCCCATTTTCCTTCGCAAGACGTATGAGATG
ATCAACACCTGCGAGGACGTGCACGCGGCCTGGACTGCTGCGGGCGACAC
CTTCGTGATCAAAGACCCAGACACGTTCGCCAATGAGGTTATCCCACGGT
TCTTCAAACACAACAAGTTCAGCTCCTTCGTCAGGCAACTTAACTTTTAC
GGCTTCCGCAAGGTCAAATCCAACATTACTGTGGATGGGCAGGACAGCAA
GTGGTGGGAATTCAAGCACGACTTGTTCCTTCGCGACAAGCCCAATCTCC
TGTCAGAGATCCGCCGCGCCACCCACTACGGCGTCACGCCGGAAAAGCAA
GAGGTGGATGACCTGCGATCGGAGGTGGGGAGCTTGCGGCTGCAGGTCGT
CGACATGGACGGCCGCATCGACGCGCTCTCGCGCATGGTGGACCGACTCC
TGGAGGAGCGCTCGGCCAGCGGCGCGGGCGTTGACGTCAAGCACGAGATC
CCGCCTACCGCAGGCTGGGCAAAGAAGCGCCGCCTGGCCGGGGAGTGGGA
CGGGATGGCAGGCGCGAACGAGTCCGAGAGCGGCGCCGTTGTCGGGGTCG
CGGCGGGACCCCCTCGCGTCAAGATGGAGGCGACCGCAGGGCCGACGGCC
GTGTGCGGCAGCGGCGAGGGCGGGGAGAATGACGCCGTTGCTGTGCGGGT
CAAACCTGAGCTGTCGGAGGGACCGGTATACCAGTTCTCTATGGGGACGG
GCGGTGATCCCACGGCTGGCGCGGGTGACTGTGACGGACTTATCATCGGC
GGCGGAGCTCTTTGCCGCGACTCTTCGTTCTTGCGGGACCTCGACAACAT
GAGCGTCGGTTCGATGGGCGGCGGTGGGTCCCTGGGCCCCCTTGAGCTGA
TTGACGTGGCGTCCAGCGAGGATGGCGAAAAGCCTCGCGCCGTTGGCAGC
ACTGGCGAGGACGCCATCAACGAGAGCTTCTTCGACCTCGACTTCGACGC
CGAAATCACTTCCATGCCTGGCTCTGACCTCGCCTCGAAAGACGGCCAGC
GGCAGCAACAGCAGCCATCCGAGAGCGAGACAGCGGCGATCGAGTCTTCC
TCCGCGAATCCTGCGGCTTCTGCAACGTCGACCCCGGCAGCGCCAGTATC
AGACGTGGCCCCGGCCTCGGTTCCGGGTGTCGTGAACACCCTCGCGAACG
GCCGGCGCGCGGGTGTGGCGGAGCCCCCTGAGATCGCTCTTCCTCTGGCC
AGCGCCGCGATCGGGGCGTTCATGGTCCACTACGCGACGGCGCAAGCTGT
GAAGGAGCCGGCTAGCGCGGTGGCGGCCGTCGCTTTGGACAAGTCGAGGC
ATGCGCTCGAGCGGACCGCTTCACTTCATTGAGCAGCAGCGGGGGAGGAC
GGGGGAGGGGCTCTGAAACCGTGGTGCCACTTTTCATGTCTGTTTTTTGT
TGAGTTAGACGTTGTGTCGGGATGGAGAAAACCCCACGGTTGCCTGTCTG
TTCTTGTAGTGTAGAATGGGACGATCAGGAGGTATGTACGTGCGCGGCTC
TGTCGGTGTACAAAAGAGTGGGAGGGTGTACCTCGGCTGATACGGGGGTC
AACGCGTCCCTTGTTGCTGCAAGTGGGAGGCCCTGACCGAGATCTGGGAA
GCTGTTTCCCAGCCCGTTTAGCGTTTATTTATTTTTTTTGTACAGGGCGG
GATCGACGTAAAGATTTCTGACATTAGAGGGCGTCTGGACGTTTTCTGTT
CAGATGCTAGGCTTGCGTAACTTTGTTTTAGCATTCCCGCGTTGAAGTTT
TGCCGTGCCTCGGGTTTTCCTGCATCCTTGAGTGAAGGCAAGCAAGCACG
TAAGCATGCGTCAATTGTACAAATGTGCTCCAGTTTTTCCTACTTCGTAC
TTCGAAGTACAGTACAAATTTTCGTTTTTTCACGTTGTACTTTGTCTTTG
TCACGGTACGTGGGGGGGTGTACCAGCTTCAGTTTTGTTGGTATTGTGTA
CCTGCACCTATTCACTTGTCTTGACAACGGTGACTTCAAGAAGAGGTGCC
GGACTTGAAACTGCCCCCCCCTCCCTCGTAGGCCTTGCTGGAAAGTAACG
GCCACCACAACCCGAGCTGGCAAGGGGCTCTCCGAATAATTGTGTTGAAC
CCAATCAGAGAAGGGTCCGTTCGTTGTCCATACACATTTTTTGAACCAGC
TGCCACCTCCGCTCCCGCTTTTTCTTTCCGGTAACGCTTTTTTTCTTTTT
TTTGTGGGCGGCAGTCGGTCATCACGTACGTGCATGTGCTGCCAACCCGA
AAGTTCTTCGGGTTTTGCCAAAACCGAGTTGGATGTGGTGTTGGAACGCA
TA
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protein sequence of EsuBft920_9a-0001

>EsuBft920_9 ID=EsuBft920_9|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=475bp
MPADGSYTMRAQPRRRKDVKDEPIFLRKTYEMINTCEDVHAAWTAAGDTF
VIKDPDTFANEVIPRFFKHNKFSSFVRQLNFYGFRKVKSNITVDGQDSKW
WEFKHDLFLRDKPNLLSEIRRATHYGVTPEKQEVDDLRSEVGSLRLQVVD
MDGRIDALSRMVDRLLEERSASGAGVDVKHEIPPTAGWAKKRRLAGEWDG
MAGANESESGAVVGVAAGPPRVKMEATAGPTAVCGSGEGGENDAVAVRVK
PELSEGPVYQFSMGTGGDPTAGAGDCDGLIIGGGALCRDSSFLRDLDNMS
VGSMGGGGSLGPLELIDVASSEDGEKPRAVGSTGEDAINESFFDLDFDAE
ITSMPGSDLASKDGQRQQQQPSESETAAIESSSANPAASATSTPAAPVSD
VAPASVPGVVNTLANGRRAGVAEPPEIALPLASAAIGAFMVHYATAQAVK
EPASAVAAVALDKSRHALERTASLH
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mRNA from alignment at Scaffold_91:584770..588966-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft920_9a-0001 ID=EsuBft920_9a-0001|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4197bp|location=Sequence derived from alignment at Scaffold_91:584770..588966- (Ectocarpus subulatus male Bft15b)
CGCCACACGACAACGCACAACGCTCTCAGCCTCTGGTCAGGACACCTCGG ACAGACATAATCGTGCCACACACAGCAGAACCTGCGACGAGTTCAGCACA CAGACAGCTGTTTCGTGAAGAGCACCTCGCTTAGCACCGGCCTTGTTTCA TCAAGCTAGGAACTTGTAGAAGTCAAGCTCTCCTTAGCAGACGGACAGCA AGCAGCACGAAGAGCAACAAGAGCAAACGAGCACACGGACAAAAGGGGGA CACGATGCCGGCTGACGGATCTTACACGATGCGGGCGCAGCCCCGGCGAC GGAAGGACGTGAAGGATGAGCCCATTTTCCTTCGCAAGACGTATGAGATG ATCAACACCTGCGAGGACGTGCACGCGGCCTGGACTGCTGCGGGCGACAC CTTCGTGATCAAAGACCCAGACACGTTCGCCAATGAGGTTATCCCACGGT TCTTCAAACGTGAGCAAGTGTTGTGTGTGTCGATTCGCGTTGCTACAGCA GGCAACGGTTTGTGTGCACGAGGATAGCGTGCGCATAGTGTTACATCTCT GCTGCCACTGGCTACCTGTTGCCTGCTGCTGCTGCTGCTGCTGCCTCCCT TCCAGCTGCGGGCGGGCCTTTCTCCGCATTTTCCCCACTTGCCACGCTAC TTCCCGTTGAAGACACACGGCGAAATAACCCGGAATCTACTTGTAGCCGT TATCGGATCGTACTACGTGCCGACCTGGTTTTACAGCGCACGCGCAGAAG TCAGTTGTCGAGTTAATCTGATGGCCGATGTACTCACGCTTGCACTGTCA TCTCAAATGCTATCGTAATGTCGGGCAGACTTGTTTATATCGGGAGCGAG ATTGTCTAGCACAAAGTAAGATTCGTTTTGTTTTACACCCTTCTGTAAAT GCATTCCCACATCCCCACACGAGGGCGCCACCTGGCGCGCAGTGATATTT TTCTTTTGCACTCATGTTTTTCTGTTCCGTACAGTCAGCACACCGCAGTG CGGCCTTTATTCGGGAAGAAACTGAAGCACGGACGCAATAACAACCCAAC TGCTCTGCGTTCGTGTGCTCCGATCCATGTGTCTGCGCAGACAACAAGTT CAGCTCCTTCGTCAGGCAACTTAACTTTTACGGCTTCCGCAAGGTCAAAT CCAACATTACTGTGGATGGGCAGGACAGCAAGTGGTGGGAATTCAAGGTC CGTGAGTCATCAGCCCAGAGAAAGAGGATGGTGTGTCTGTTCCCACAGCT GCAGCTCATAGAGCACCATCTCACCACACATGAAATGCTAATCTCGGTAA ACGAGGGCGGTGTATATAGTGTGCGGCAACAAGACAAGTTAGAATGCGAC GGGTTGGACAGGAGTACGAGCCCAAATTCATGAACAACCATCTACCACTG AAGATTTCAGCACAGTACTTTGGAGTGGTGGAAACTGCGCGGTGTCTCTC CGTTATCGTATCGATGTACGTATGTGATGTGTATGCATGTGCCATCCAAG AGTCTTCCCCCATCCCCCCGATTTCCGTCTGCCATTCGTGTTTCGCGTTC GCGGATGTGCTGAAGCTGTTGGCCACGTATGGTACTTTTTTGTTGTTTAC GTCAACGACACGAGCAAGCAGTGGCATTGAACGACTGCTGTGGTTTCAGA GAAAAACATGCAGTCAAAGCGAGACTGCTGCTGTTTTCCTTGGAGATATG CCACAGCAGTCGAAGGCCTTGTGCGTGGAAGTATTGACAGCAGTGAGTGT GAAGAAAATTGACTGGATACTGGACTCATATGTAGGGTCTTATTTAGCCC ATACACTAAATTGTTTTTCACAAGTAGGGCCAAACATTCATTCCCTCGCC ACGGTGACGATCATGTCTCTTGAATCACGCCGTCTTGGAAGTGTGTAGCG TGCGTTGTGTCGGAACTATCTGGTGCTGCGTTTTGATCAAGATGGCCCAT GGGAACCATCCGTCACAGACTCCAGTGCCCGCCGTAAAGTACTGCTGCTG TGGTCGCATACACGCACCGCGTAGTAAAGCTCGTTCACCTCAAACCTCAA GACCTTGCCTTGCGCGGGCACGCCCCTGTCCTAAATCCGTCCTTCTGCTT TAAATCCACAGCACGACTTGTTCCTTCGCGACAAGCCCAATCTCCTGTCA GAGATCCGCCGCGCCACCCACTACGGCGTCACGCCGGAAAAGCAAGAGGT GGATGACCTGCGATCGGAGGTGGGGAGCTTGCGGCTGCAGGTCGTCGACA TGGACGGCCGCATCGACGCGCTCTCGCGCATGGTGGACCGACTCCTGGAG GAGCGCTCGGCCAGCGGCGCGGGCGTTGACGTCAAGCACGAGATCCCGCC TACCGCAGGCTGGGCAAAGAAGCGCCGCCTGGCCGGGGAGTGGGACGGGA TGGCAGGCGCGAACGAGTCCGAGAGCGGCGCCGTTGTCGGGGTCGCGGCG GGACCCCCTCGCGTCAAGATGGAGGCGACCGCAGGGCCGACGGCCGTGTG CGGCAGCGGCGAGGGCGGGGAGAATGACGCCGTTGCTGTGCGGGTCAAAC CTGAGCTGTCGGAGGGACCGGTATACCAGTTCTCTATGGGGACGGGCGGT GATCCCACGGCTGGCGCGGGTGACTGTGACGGACTTATCATCGGCGGCGG AGCTCTTTGCCGCGACTCTTCGTTCTTGCGGGACCTCGACAACATGAGCG TCGGTTCGATGGGCGGCGGTGGGTCCCTGGGCCCCCTTGAGCTGATTGAC GTGGCGTCCAGCGAGGATGGCGAAAAGCCTCGCGCCGTTGGCAGCACTGG CGAGGACGCCATCAACGAGAGCTTCTTCGACCTCGACTTCGACGCCGAAA TCACTTCCATGCCTGGCTCTGACCTCGCCTCGAAAGACGGCCAGCGGCAG CAACAGCAGCCATCCGAGAGCGAGACAGCGGCGATCGAGTCTTCCTCCGC GAATCCTGCGGCTTCTGCAACGTCGACCCCGGCAGCGCCAGTATCAGACG TGGCCCCGGCCTCGGTTCCGGGTGTCGTGAACACCCTCGCGAACGGCCGG CGCGCGGGTGTGGCGGAGCCCCCTGAGATCGCTCTTCCTCTGGCCAGCGC CGCGATCGGGGCGTTCATGGTCCACTACGCGACGGCGCAAGCTGTGAAGG AGCCGGCTAGCGCGGTGGCGGCCGTCGCTTTGGACAAGTCGAGGCATGCG CTCGAGCGGACCGCTTCACTTCATTGAGCAGCAGCGGGGGAGGACGGGGG AGGGGCTCTGAAACCGTGGTGCCACTTTTCATGTCTGTTTTTTGTTGAGT TAGACGTTGTGTCGGGATGGAGAAAACCCCACGGTTGCCTGTCTGTTCTT GTAGTGTAGAATGGGACGATCAGGAGGTATGTACGTGCGCGGCTCTGTCG GTGTACAAAAGAGTGGGAGGGTGTACCTCGGCTGATACGGGGGTCAACGC GTCCCTTGTTGCTGCAAGTGGGAGGCCCTGACCGAGATCTGGGAAGCTGT TTCCCAGCCCGTTTAGCGTTTATTTATTTTTTTTGTACAGGGCGGGATCG ACGTAAAGATTTCTGACATTAGAGGGCGTCTGGACGTTTTCTGTTCAGAT GCTAGGCTTGCGTAACTTTGTTTTAGCATTCCCGCGTTGAAGTTTTGCCG TGCCTCGGGTTTTCCTGCATCCTTGAGTGAAGGCAAGCAAGCACGTAAGC ATGCGTCAATTGTACAAATGTGCTCCAGTTTTTCCTACTTCGTACTTCGA AGTACAGTACAAATTTTCGTTTTTTCACGTTGTACTTTGTCTTTGTCACG GTACGTGGGGGGGTGTACCAGCTTCAGTTTTGTTGGTATTGTGTACCTGC ACCTATTCACTTGTCTTGACAACGGTGACTTCAAGAAGAGGTGCCGGACT TGAAACTGCCCCCCCCTCCCTCGTAGGCCTTGCTGGAAAGTAACGGCCAC CACAACCCGAGCTGGCAAGGGGCTCTCCGAATAATTGTGTTGAACCCAAT CAGAGAAGGGTCCGTTCGTTGTCCATACACATTTTTTGAACCAGCTGCCA CCTCCGCTCCCGCTTTTTCTTTCCGGTAACGCTTTTTTTCTTTTTTTTGT GGGCGGCAGTCGGTCATCACGTACGTGCATGTGCTGCCAACCCGAAAGTT CTTCGGGTTTTGCCAAAACCGAGTTGGATGTGGTGTTGGAACGCATA
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Coding sequence (CDS) from alignment at Scaffold_91:584770..588966-

>EsuBft920_9a-0001 ID=EsuBft920_9a-0001|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1428bp|location=Sequence derived from alignment at Scaffold_91:584770..588966- (Ectocarpus subulatus male Bft15b)
ATGCCGGCTGACGGATCTTACACGATGCGGGCGCAGCCCCGGCGACGGAA
GGACGTGAAGGATGAGCCCATTTTCCTTCGCAAGACGTATGAGATGATCA
ACACCTGCGAGGACGTGCACGCGGCCTGGACTGCTGCGGGCGACACCTTC
GTGATCAAAGACCCAGACACGTTCGCCAATGAGGTTATCCCACGGTTCTT
CAAACACAACAAGTTCAGCTCCTTCGTCAGGCAACTTAACTTTTACGGCT
TCCGCAAGGTCAAATCCAACATTACTGTGGATGGGCAGGACAGCAAGTGG
TGGGAATTCAAGCACGACTTGTTCCTTCGCGACAAGCCCAATCTCCTGTC
AGAGATCCGCCGCGCCACCCACTACGGCGTCACGCCGGAAAAGCAAGAGG
TGGATGACCTGCGATCGGAGGTGGGGAGCTTGCGGCTGCAGGTCGTCGAC
ATGGACGGCCGCATCGACGCGCTCTCGCGCATGGTGGACCGACTCCTGGA
GGAGCGCTCGGCCAGCGGCGCGGGCGTTGACGTCAAGCACGAGATCCCGC
CTACCGCAGGCTGGGCAAAGAAGCGCCGCCTGGCCGGGGAGTGGGACGGG
ATGGCAGGCGCGAACGAGTCCGAGAGCGGCGCCGTTGTCGGGGTCGCGGC
GGGACCCCCTCGCGTCAAGATGGAGGCGACCGCAGGGCCGACGGCCGTGT
GCGGCAGCGGCGAGGGCGGGGAGAATGACGCCGTTGCTGTGCGGGTCAAA
CCTGAGCTGTCGGAGGGACCGGTATACCAGTTCTCTATGGGGACGGGCGG
TGATCCCACGGCTGGCGCGGGTGACTGTGACGGACTTATCATCGGCGGCG
GAGCTCTTTGCCGCGACTCTTCGTTCTTGCGGGACCTCGACAACATGAGC
GTCGGTTCGATGGGCGGCGGTGGGTCCCTGGGCCCCCTTGAGCTGATTGA
CGTGGCGTCCAGCGAGGATGGCGAAAAGCCTCGCGCCGTTGGCAGCACTG
GCGAGGACGCCATCAACGAGAGCTTCTTCGACCTCGACTTCGACGCCGAA
ATCACTTCCATGCCTGGCTCTGACCTCGCCTCGAAAGACGGCCAGCGGCA
GCAACAGCAGCCATCCGAGAGCGAGACAGCGGCGATCGAGTCTTCCTCCG
CGAATCCTGCGGCTTCTGCAACGTCGACCCCGGCAGCGCCAGTATCAGAC
GTGGCCCCGGCCTCGGTTCCGGGTGTCGTGAACACCCTCGCGAACGGCCG
GCGCGCGGGTGTGGCGGAGCCCCCTGAGATCGCTCTTCCTCTGGCCAGCG
CCGCGATCGGGGCGTTCATGGTCCACTACGCGACGGCGCAAGCTGTGAAG
GAGCCGGCTAGCGCGGTGGCGGCCGTCGCTTTGGACAAGTCGAGGCATGC
GCTCGAGCGGACCGCTTCACTTCATTGA
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