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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2850.Phatr45112 |
| ProteomeId | EsuBft920_9 |
| Protein domains | SSF46785 |
| Protein domains | IPR027725 |
| Protein domains | IPR011991 |
| Protein domains | IPR000232 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | heat stress transcription factor a-2e os:oryza sativa japonica gn:hsfa2e pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2836|Bacillariophyta |
| Length | 2652 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.67e-36 |
| EggNOG OGs | COG5169@1|root,KOG0627@2759|Eukaryota,2XCJ0@2836|Bacillariophyta |
| Ec32 ortholog description | Heat Shock transcription factor |
| Ec32 ortholog | Ec-01_002650.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | heat shock factor |
| COG category | K |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0010468 |
| GO | 0048530 |
| GO | 1901700 |
| GO | 0005774 |
| GO | 0001101 |
| GO | 0009958 |
| GO | 0009408 |
| GO | 0005515 |
| GO | 0009733 |
| GO | 0048527 |
| GO | 0003700 |
| GO | 0042802 |
| GO | 0003824 |
| GO | 0007034 |
| GO | 0008152 |
| GO | 0043565 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft920_9a-0001 ID=EsuBft920_9a-0001|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2652bp|location=Sequence derived from alignment at Scaffold_91:584770..588966- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGCCACACGACAACGCACAACGCTCTCAGCCTCTGGTCAGGACACCTCGG ACAGACATAATCGTGCCACACACAGCAGAACCTGCGACGAGTTCAGCACA CAGACAGCTGTTTCGTGAAGAGCACCTCGCTTAGCACCGGCCTTGTTTCA TCAAGCTAGGAACTTGTAGAAGTCAAGCTCTCCTTAGCAGACGGACAGCA AGCAGCACGAAGAGCAACAAGAGCAAACGAGCACACGGACAAAAGGGGGA CACGATGCCGGCTGACGGATCTTACACGATGCGGGCGCAGCCCCGGCGAC GGAAGGACGTGAAGGATGAGCCCATTTTCCTTCGCAAGACGTATGAGATG ATCAACACCTGCGAGGACGTGCACGCGGCCTGGACTGCTGCGGGCGACAC CTTCGTGATCAAAGACCCAGACACGTTCGCCAATGAGGTTATCCCACGGT TCTTCAAACACAACAAGTTCAGCTCCTTCGTCAGGCAACTTAACTTTTAC GGCTTCCGCAAGGTCAAATCCAACATTACTGTGGATGGGCAGGACAGCAA GTGGTGGGAATTCAAGCACGACTTGTTCCTTCGCGACAAGCCCAATCTCC TGTCAGAGATCCGCCGCGCCACCCACTACGGCGTCACGCCGGAAAAGCAA GAGGTGGATGACCTGCGATCGGAGGTGGGGAGCTTGCGGCTGCAGGTCGT CGACATGGACGGCCGCATCGACGCGCTCTCGCGCATGGTGGACCGACTCC TGGAGGAGCGCTCGGCCAGCGGCGCGGGCGTTGACGTCAAGCACGAGATC CCGCCTACCGCAGGCTGGGCAAAGAAGCGCCGCCTGGCCGGGGAGTGGGA CGGGATGGCAGGCGCGAACGAGTCCGAGAGCGGCGCCGTTGTCGGGGTCG CGGCGGGACCCCCTCGCGTCAAGATGGAGGCGACCGCAGGGCCGACGGCC GTGTGCGGCAGCGGCGAGGGCGGGGAGAATGACGCCGTTGCTGTGCGGGT CAAACCTGAGCTGTCGGAGGGACCGGTATACCAGTTCTCTATGGGGACGG GCGGTGATCCCACGGCTGGCGCGGGTGACTGTGACGGACTTATCATCGGC GGCGGAGCTCTTTGCCGCGACTCTTCGTTCTTGCGGGACCTCGACAACAT GAGCGTCGGTTCGATGGGCGGCGGTGGGTCCCTGGGCCCCCTTGAGCTGA TTGACGTGGCGTCCAGCGAGGATGGCGAAAAGCCTCGCGCCGTTGGCAGC ACTGGCGAGGACGCCATCAACGAGAGCTTCTTCGACCTCGACTTCGACGC CGAAATCACTTCCATGCCTGGCTCTGACCTCGCCTCGAAAGACGGCCAGC GGCAGCAACAGCAGCCATCCGAGAGCGAGACAGCGGCGATCGAGTCTTCC TCCGCGAATCCTGCGGCTTCTGCAACGTCGACCCCGGCAGCGCCAGTATC AGACGTGGCCCCGGCCTCGGTTCCGGGTGTCGTGAACACCCTCGCGAACG GCCGGCGCGCGGGTGTGGCGGAGCCCCCTGAGATCGCTCTTCCTCTGGCC AGCGCCGCGATCGGGGCGTTCATGGTCCACTACGCGACGGCGCAAGCTGT GAAGGAGCCGGCTAGCGCGGTGGCGGCCGTCGCTTTGGACAAGTCGAGGC ATGCGCTCGAGCGGACCGCTTCACTTCATTGAGCAGCAGCGGGGGAGGAC GGGGGAGGGGCTCTGAAACCGTGGTGCCACTTTTCATGTCTGTTTTTTGT TGAGTTAGACGTTGTGTCGGGATGGAGAAAACCCCACGGTTGCCTGTCTG TTCTTGTAGTGTAGAATGGGACGATCAGGAGGTATGTACGTGCGCGGCTC TGTCGGTGTACAAAAGAGTGGGAGGGTGTACCTCGGCTGATACGGGGGTC AACGCGTCCCTTGTTGCTGCAAGTGGGAGGCCCTGACCGAGATCTGGGAA GCTGTTTCCCAGCCCGTTTAGCGTTTATTTATTTTTTTTGTACAGGGCGG GATCGACGTAAAGATTTCTGACATTAGAGGGCGTCTGGACGTTTTCTGTT CAGATGCTAGGCTTGCGTAACTTTGTTTTAGCATTCCCGCGTTGAAGTTT TGCCGTGCCTCGGGTTTTCCTGCATCCTTGAGTGAAGGCAAGCAAGCACG TAAGCATGCGTCAATTGTACAAATGTGCTCCAGTTTTTCCTACTTCGTAC TTCGAAGTACAGTACAAATTTTCGTTTTTTCACGTTGTACTTTGTCTTTG TCACGGTACGTGGGGGGGTGTACCAGCTTCAGTTTTGTTGGTATTGTGTA CCTGCACCTATTCACTTGTCTTGACAACGGTGACTTCAAGAAGAGGTGCC GGACTTGAAACTGCCCCCCCCTCCCTCGTAGGCCTTGCTGGAAAGTAACG GCCACCACAACCCGAGCTGGCAAGGGGCTCTCCGAATAATTGTGTTGAAC CCAATCAGAGAAGGGTCCGTTCGTTGTCCATACACATTTTTTGAACCAGC TGCCACCTCCGCTCCCGCTTTTTCTTTCCGGTAACGCTTTTTTTCTTTTT TTTGTGGGCGGCAGTCGGTCATCACGTACGTGCATGTGCTGCCAACCCGA AAGTTCTTCGGGTTTTGCCAAAACCGAGTTGGATGTGGTGTTGGAACGCA TA back to topprotein sequence of EsuBft920_9a-0001 >EsuBft920_9 ID=EsuBft920_9|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=475bp
MPADGSYTMRAQPRRRKDVKDEPIFLRKTYEMINTCEDVHAAWTAAGDTF VIKDPDTFANEVIPRFFKHNKFSSFVRQLNFYGFRKVKSNITVDGQDSKW WEFKHDLFLRDKPNLLSEIRRATHYGVTPEKQEVDDLRSEVGSLRLQVVD MDGRIDALSRMVDRLLEERSASGAGVDVKHEIPPTAGWAKKRRLAGEWDG MAGANESESGAVVGVAAGPPRVKMEATAGPTAVCGSGEGGENDAVAVRVK PELSEGPVYQFSMGTGGDPTAGAGDCDGLIIGGGALCRDSSFLRDLDNMS VGSMGGGGSLGPLELIDVASSEDGEKPRAVGSTGEDAINESFFDLDFDAE ITSMPGSDLASKDGQRQQQQPSESETAAIESSSANPAASATSTPAAPVSD VAPASVPGVVNTLANGRRAGVAEPPEIALPLASAAIGAFMVHYATAQAVK EPASAVAAVALDKSRHALERTASLH back to topmRNA from alignment at Scaffold_91:584770..588966- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft920_9a-0001 ID=EsuBft920_9a-0001|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4197bp|location=Sequence derived from alignment at Scaffold_91:584770..588966- (Ectocarpus subulatus male Bft15b) CGCCACACGACAACGCACAACGCTCTCAGCCTCTGGTCAGGACACCTCGG
ACAGACATAATCGTGCCACACACAGCAGAACCTGCGACGAGTTCAGCACA
CAGACAGCTGTTTCGTGAAGAGCACCTCGCTTAGCACCGGCCTTGTTTCA
TCAAGCTAGGAACTTGTAGAAGTCAAGCTCTCCTTAGCAGACGGACAGCA
AGCAGCACGAAGAGCAACAAGAGCAAACGAGCACACGGACAAAAGGGGGA
CACGATGCCGGCTGACGGATCTTACACGATGCGGGCGCAGCCCCGGCGAC
GGAAGGACGTGAAGGATGAGCCCATTTTCCTTCGCAAGACGTATGAGATG
ATCAACACCTGCGAGGACGTGCACGCGGCCTGGACTGCTGCGGGCGACAC
CTTCGTGATCAAAGACCCAGACACGTTCGCCAATGAGGTTATCCCACGGT
TCTTCAAACGTGAGCAAGTGTTGTGTGTGTCGATTCGCGTTGCTACAGCA
GGCAACGGTTTGTGTGCACGAGGATAGCGTGCGCATAGTGTTACATCTCT
GCTGCCACTGGCTACCTGTTGCCTGCTGCTGCTGCTGCTGCTGCCTCCCT
TCCAGCTGCGGGCGGGCCTTTCTCCGCATTTTCCCCACTTGCCACGCTAC
TTCCCGTTGAAGACACACGGCGAAATAACCCGGAATCTACTTGTAGCCGT
TATCGGATCGTACTACGTGCCGACCTGGTTTTACAGCGCACGCGCAGAAG
TCAGTTGTCGAGTTAATCTGATGGCCGATGTACTCACGCTTGCACTGTCA
TCTCAAATGCTATCGTAATGTCGGGCAGACTTGTTTATATCGGGAGCGAG
ATTGTCTAGCACAAAGTAAGATTCGTTTTGTTTTACACCCTTCTGTAAAT
GCATTCCCACATCCCCACACGAGGGCGCCACCTGGCGCGCAGTGATATTT
TTCTTTTGCACTCATGTTTTTCTGTTCCGTACAGTCAGCACACCGCAGTG
CGGCCTTTATTCGGGAAGAAACTGAAGCACGGACGCAATAACAACCCAAC
TGCTCTGCGTTCGTGTGCTCCGATCCATGTGTCTGCGCAGACAACAAGTT
CAGCTCCTTCGTCAGGCAACTTAACTTTTACGGCTTCCGCAAGGTCAAAT
CCAACATTACTGTGGATGGGCAGGACAGCAAGTGGTGGGAATTCAAGGTC
CGTGAGTCATCAGCCCAGAGAAAGAGGATGGTGTGTCTGTTCCCACAGCT
GCAGCTCATAGAGCACCATCTCACCACACATGAAATGCTAATCTCGGTAA
ACGAGGGCGGTGTATATAGTGTGCGGCAACAAGACAAGTTAGAATGCGAC
GGGTTGGACAGGAGTACGAGCCCAAATTCATGAACAACCATCTACCACTG
AAGATTTCAGCACAGTACTTTGGAGTGGTGGAAACTGCGCGGTGTCTCTC
CGTTATCGTATCGATGTACGTATGTGATGTGTATGCATGTGCCATCCAAG
AGTCTTCCCCCATCCCCCCGATTTCCGTCTGCCATTCGTGTTTCGCGTTC
GCGGATGTGCTGAAGCTGTTGGCCACGTATGGTACTTTTTTGTTGTTTAC
GTCAACGACACGAGCAAGCAGTGGCATTGAACGACTGCTGTGGTTTCAGA
GAAAAACATGCAGTCAAAGCGAGACTGCTGCTGTTTTCCTTGGAGATATG
CCACAGCAGTCGAAGGCCTTGTGCGTGGAAGTATTGACAGCAGTGAGTGT
GAAGAAAATTGACTGGATACTGGACTCATATGTAGGGTCTTATTTAGCCC
ATACACTAAATTGTTTTTCACAAGTAGGGCCAAACATTCATTCCCTCGCC
ACGGTGACGATCATGTCTCTTGAATCACGCCGTCTTGGAAGTGTGTAGCG
TGCGTTGTGTCGGAACTATCTGGTGCTGCGTTTTGATCAAGATGGCCCAT
GGGAACCATCCGTCACAGACTCCAGTGCCCGCCGTAAAGTACTGCTGCTG
TGGTCGCATACACGCACCGCGTAGTAAAGCTCGTTCACCTCAAACCTCAA
GACCTTGCCTTGCGCGGGCACGCCCCTGTCCTAAATCCGTCCTTCTGCTT
TAAATCCACAGCACGACTTGTTCCTTCGCGACAAGCCCAATCTCCTGTCA
GAGATCCGCCGCGCCACCCACTACGGCGTCACGCCGGAAAAGCAAGAGGT
GGATGACCTGCGATCGGAGGTGGGGAGCTTGCGGCTGCAGGTCGTCGACA
TGGACGGCCGCATCGACGCGCTCTCGCGCATGGTGGACCGACTCCTGGAG
GAGCGCTCGGCCAGCGGCGCGGGCGTTGACGTCAAGCACGAGATCCCGCC
TACCGCAGGCTGGGCAAAGAAGCGCCGCCTGGCCGGGGAGTGGGACGGGA
TGGCAGGCGCGAACGAGTCCGAGAGCGGCGCCGTTGTCGGGGTCGCGGCG
GGACCCCCTCGCGTCAAGATGGAGGCGACCGCAGGGCCGACGGCCGTGTG
CGGCAGCGGCGAGGGCGGGGAGAATGACGCCGTTGCTGTGCGGGTCAAAC
CTGAGCTGTCGGAGGGACCGGTATACCAGTTCTCTATGGGGACGGGCGGT
GATCCCACGGCTGGCGCGGGTGACTGTGACGGACTTATCATCGGCGGCGG
AGCTCTTTGCCGCGACTCTTCGTTCTTGCGGGACCTCGACAACATGAGCG
TCGGTTCGATGGGCGGCGGTGGGTCCCTGGGCCCCCTTGAGCTGATTGAC
GTGGCGTCCAGCGAGGATGGCGAAAAGCCTCGCGCCGTTGGCAGCACTGG
CGAGGACGCCATCAACGAGAGCTTCTTCGACCTCGACTTCGACGCCGAAA
TCACTTCCATGCCTGGCTCTGACCTCGCCTCGAAAGACGGCCAGCGGCAG
CAACAGCAGCCATCCGAGAGCGAGACAGCGGCGATCGAGTCTTCCTCCGC
GAATCCTGCGGCTTCTGCAACGTCGACCCCGGCAGCGCCAGTATCAGACG
TGGCCCCGGCCTCGGTTCCGGGTGTCGTGAACACCCTCGCGAACGGCCGG
CGCGCGGGTGTGGCGGAGCCCCCTGAGATCGCTCTTCCTCTGGCCAGCGC
CGCGATCGGGGCGTTCATGGTCCACTACGCGACGGCGCAAGCTGTGAAGG
AGCCGGCTAGCGCGGTGGCGGCCGTCGCTTTGGACAAGTCGAGGCATGCG
CTCGAGCGGACCGCTTCACTTCATTGAGCAGCAGCGGGGGAGGACGGGGG
AGGGGCTCTGAAACCGTGGTGCCACTTTTCATGTCTGTTTTTTGTTGAGT
TAGACGTTGTGTCGGGATGGAGAAAACCCCACGGTTGCCTGTCTGTTCTT
GTAGTGTAGAATGGGACGATCAGGAGGTATGTACGTGCGCGGCTCTGTCG
GTGTACAAAAGAGTGGGAGGGTGTACCTCGGCTGATACGGGGGTCAACGC
GTCCCTTGTTGCTGCAAGTGGGAGGCCCTGACCGAGATCTGGGAAGCTGT
TTCCCAGCCCGTTTAGCGTTTATTTATTTTTTTTGTACAGGGCGGGATCG
ACGTAAAGATTTCTGACATTAGAGGGCGTCTGGACGTTTTCTGTTCAGAT
GCTAGGCTTGCGTAACTTTGTTTTAGCATTCCCGCGTTGAAGTTTTGCCG
TGCCTCGGGTTTTCCTGCATCCTTGAGTGAAGGCAAGCAAGCACGTAAGC
ATGCGTCAATTGTACAAATGTGCTCCAGTTTTTCCTACTTCGTACTTCGA
AGTACAGTACAAATTTTCGTTTTTTCACGTTGTACTTTGTCTTTGTCACG
GTACGTGGGGGGGTGTACCAGCTTCAGTTTTGTTGGTATTGTGTACCTGC
ACCTATTCACTTGTCTTGACAACGGTGACTTCAAGAAGAGGTGCCGGACT
TGAAACTGCCCCCCCCTCCCTCGTAGGCCTTGCTGGAAAGTAACGGCCAC
CACAACCCGAGCTGGCAAGGGGCTCTCCGAATAATTGTGTTGAACCCAAT
CAGAGAAGGGTCCGTTCGTTGTCCATACACATTTTTTGAACCAGCTGCCA
CCTCCGCTCCCGCTTTTTCTTTCCGGTAACGCTTTTTTTCTTTTTTTTGT
GGGCGGCAGTCGGTCATCACGTACGTGCATGTGCTGCCAACCCGAAAGTT
CTTCGGGTTTTGCCAAAACCGAGTTGGATGTGGTGTTGGAACGCATA back to topCoding sequence (CDS) from alignment at Scaffold_91:584770..588966- >EsuBft920_9a-0001 ID=EsuBft920_9a-0001|Name=EsuBft920_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1428bp|location=Sequence derived from alignment at Scaffold_91:584770..588966- (Ectocarpus subulatus male Bft15b) ATGCCGGCTGACGGATCTTACACGATGCGGGCGCAGCCCCGGCGACGGAA GGACGTGAAGGATGAGCCCATTTTCCTTCGCAAGACGTATGAGATGATCA ACACCTGCGAGGACGTGCACGCGGCCTGGACTGCTGCGGGCGACACCTTC GTGATCAAAGACCCAGACACGTTCGCCAATGAGGTTATCCCACGGTTCTT CAAACACAACAAGTTCAGCTCCTTCGTCAGGCAACTTAACTTTTACGGCT TCCGCAAGGTCAAATCCAACATTACTGTGGATGGGCAGGACAGCAAGTGG TGGGAATTCAAGCACGACTTGTTCCTTCGCGACAAGCCCAATCTCCTGTC AGAGATCCGCCGCGCCACCCACTACGGCGTCACGCCGGAAAAGCAAGAGG TGGATGACCTGCGATCGGAGGTGGGGAGCTTGCGGCTGCAGGTCGTCGAC ATGGACGGCCGCATCGACGCGCTCTCGCGCATGGTGGACCGACTCCTGGA GGAGCGCTCGGCCAGCGGCGCGGGCGTTGACGTCAAGCACGAGATCCCGC CTACCGCAGGCTGGGCAAAGAAGCGCCGCCTGGCCGGGGAGTGGGACGGG ATGGCAGGCGCGAACGAGTCCGAGAGCGGCGCCGTTGTCGGGGTCGCGGC GGGACCCCCTCGCGTCAAGATGGAGGCGACCGCAGGGCCGACGGCCGTGT GCGGCAGCGGCGAGGGCGGGGAGAATGACGCCGTTGCTGTGCGGGTCAAA CCTGAGCTGTCGGAGGGACCGGTATACCAGTTCTCTATGGGGACGGGCGG TGATCCCACGGCTGGCGCGGGTGACTGTGACGGACTTATCATCGGCGGCG GAGCTCTTTGCCGCGACTCTTCGTTCTTGCGGGACCTCGACAACATGAGC GTCGGTTCGATGGGCGGCGGTGGGTCCCTGGGCCCCCTTGAGCTGATTGA CGTGGCGTCCAGCGAGGATGGCGAAAAGCCTCGCGCCGTTGGCAGCACTG GCGAGGACGCCATCAACGAGAGCTTCTTCGACCTCGACTTCGACGCCGAA ATCACTTCCATGCCTGGCTCTGACCTCGCCTCGAAAGACGGCCAGCGGCA GCAACAGCAGCCATCCGAGAGCGAGACAGCGGCGATCGAGTCTTCCTCCG CGAATCCTGCGGCTTCTGCAACGTCGACCCCGGCAGCGCCAGTATCAGAC GTGGCCCCGGCCTCGGTTCCGGGTGTCGTGAACACCCTCGCGAACGGCCG GCGCGCGGGTGTGGCGGAGCCCCCTGAGATCGCTCTTCCTCTGGCCAGCG CCGCGATCGGGGCGTTCATGGTCCACTACGCGACGGCGCAAGCTGTGAAG GAGCCGGCTAGCGCGGTGGCGGCCGTCGCTTTGGACAAGTCGAGGCATGC GCTCGAGCGGACCGCTTCACTTCATTGA back to top
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