EsuBft920_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft920_8a-0001
Unique NameEsuBft920_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:589148..591739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog9785.ENSLAFP00000012346
ProteomeIdEsuBft920_8
Protein domainsSSF57845
Ownerapollo_admin@sb-roscoff.fr
Noteabscission ut checkpoint regulator os:homo sapiens gn:zfyve19 pe:1 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1355
Hectar predicted targeting categoryother localisation
Evalue3.46e-06
EggNOG OGsKOG1818@1|root,KOG1818@2759|Eukaryota,38G71@33154|Opisthokonta,3BF4N@33208|Metazoa,3CXXH@33213|Bilateria,485RH@7711|Chordata,49677@7742|Vertebrata,3J30S@40674|Mammalia,34VYF@311790|Afrotheria
Ec32 ortholog descriptionzinc finger, FYVE domain containing 19, isoform CRA_g
Ec32 orthologEc-01_002660.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameZFYVE19
GOsGO:0000075,GO:0000278,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0007049,GO:0007093,GO:0007275,GO:0007346,GO:0008150,GO:0008289,GO:0009838,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0015630,GO:0016020,GO:0022402,GO:0030496,GO:0032153,GO:0032154,GO:0032155,GO:0032266,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0035091,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044878,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0051302,GO:0051726,GO:0051782,GO:0065007,GO:0071944,GO:0098590,GO:1901981,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047
DescriptionZinc finger FYVE domain-containing protein 19
COG categoryTU
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0005813
GO0031565
GO0032466
GO0032266
GO0032154
GO0030496
GO0009838
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft920_8aEsuBft920_8aEctocarpus subulatus male Bft15bgeneScaffold_91 589148..591739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_8a-0001EsuBft920_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 589297..591712 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_8a-0001-exonagat-exon-48738Ectocarpus subulatus male Bft15bexonScaffold_91 589148..589605 +
EsuBft920_8a-0001-exonEsuBft920_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 589887..590216 +
EsuBft920_8a-0001-exonagat-exon-48737Ectocarpus subulatus male Bft15bexonScaffold_91 591173..591739 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_8a-0001-exonagat-five_prime_utr-15010Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_91 589148..589296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_8a-0001-cdsEsuBft920_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 589297..589605 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_8a-0001-exonagat-three_prime_utr-23079Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 591713..591739 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft920_8a-0001 ID=EsuBft920_8a-0001|Name=EsuBft920_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1355bp|location=Sequence derived from alignment at Scaffold_91:589148..591739+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGGGCGTGTGCCTGTATACTCTTGTACTGCTATCGCACATCCCTACTGA
TTGTAGCCAATGCCGTAGGAGCAGTTGCTGAGCAGGGGGACGAAGCACTT
TGATAACGTATCGTTGGCGCGTGTGCCAGGTACAGCAGTGAGAACGAATA
TGCCCGACATAGACAAAGAATTGGCGGACAGATTAGGCAGGCTTCAGGGA
CTGTCCACAAGCAGTAGTTCAGGAGGCCATAGCACCGGCGTCGGGCTTCA
AGAACGCCTGGACGCTTTATCTGTGCACTGTCCAGAAGGTGCAGAGGAGG
AGTTCAACAACCGATTAGCTTCGCTTTCAGCAGCAAGAGACACGCCATCC
TCCGCGGAGAATCTCAACACACGGCTCTCTAGGTTAGCGACCGGGAGCGA
TTCCGGGTCCAAGTCAGCTATGGCTGCTCCTGGGAAACGGCAGTACGATG
TACCAGAGGACTTTTCCGTCGAATGGGAAGACCTGGATGATTTGTTGGCA
AACGCGCTTGAGGGAAGCGAAGGTTCGCCTTCAACTGGCGAGCCATCGCT
ACTGGGGGAGTCCGATGTCGACCGGAAGCTCAGCGAGCTCGATGTGCTGC
TGAGAGCCGAAGCTTCTCGAGTAACACTCGGCGGCAGCGCCCCAACCGAA
CACGCCGCGGCGACGGTCGACCAAGCGGTGGAGGCATTTCTTGGAGGAGG
AGGAGCGGGTGGGGATGGGGCCGGGCGGGGAGACCAGGGCATGAGAGGCG
GTTCACTAAACGTTGAGGAAGAGCGTCTACTGCAGATGGTGTCCGACCAA
GTACTGCTCGAGGGTGGCGGCCTAATCAAACAAGCATCCGCGCCAGTGCA
GGAGAAACCGGGAGAGATGTGGCTCCCCGTCGCCCCCACAGGCCGACCAG
AAATTTCTTCTCCTGCCGCCGGCGCAAACGTCGGCGCCGGATCAGCAGAC
GCAAGACTCATCGCGCAGCAGGCGATGGATGAAGCACGTTTAGGCCTTAC
CAGCACCAGCGACGGGTACAAACCGGCGTCCGAGAATGGAAAAAGTGTGT
CACATCGAGATGGGTGGCAGGCGGCGGCGTGTCCGAAGGATGAAGCGTTG
TCATCCTCGTGGTGCTGCATTTGCAGTGAGGACGCGAGCTTGAGGTGCAG
GCCCTGCGAACGGGAAAACGGTCAGGACGAACCGGAACTCTTTTGCGCGC
GGTGCTTCAAGGAAACCCACAGAGGGGACTCCGAGATGGAGGTGCACCAA
CCGCAGGCGTTGTCGAGGGCAAGGCAACAGGAGGAGGACGGGAGAAAAGG
CCGTCGAACCTGGCGGCGCCGGAAGTAATTGTGTGTTCGTGTGATCGTTT
GTGAT
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protein sequence of EsuBft920_8a-0001

>EsuBft920_8 ID=EsuBft920_8|Name=EsuBft920_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=392bp
MPDIDKELADRLGRLQGLSTSSSSGGHSTGVGLQERLDALSVHCPEGAEE
EFNNRLASLSAARDTPSSAENLNTRLSRLATGSDSGSKSAMAAPGKRQYD
VPEDFSVEWEDLDDLLANALEGSEGSPSTGEPSLLGESDVDRKLSELDVL
LRAEASRVTLGGSAPTEHAAATVDQAVEAFLGGGGAGGDGAGRGDQGMRG
GSLNVEEERLLQMVSDQVLLEGGGLIKQASAPVQEKPGEMWLPVAPTGRP
EISSPAAGANVGAGSADARLIAQQAMDEARLGLTSTSDGYKPASENGKSV
SHRDGWQAAACPKDEALSSSWCCICSEDASLRCRPCERENGQDEPELFCA
RCFKETHRGDSEMEVHQPQALSRARQQEEDGRKGRRTWRRRK
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mRNA from alignment at Scaffold_91:589148..591739+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft920_8a-0001 ID=EsuBft920_8a-0001|Name=EsuBft920_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2592bp|location=Sequence derived from alignment at Scaffold_91:589148..591739+ (Ectocarpus subulatus male Bft15b)
TGGGGCGTGTGCCTGTATACTCTTGTACTGCTATCGCACATCCCTACTGA
TTGTAGCCAATGCCGTAGGAGCAGTTGCTGAGCAGGGGGACGAAGCACTT
TGATAACGTATCGTTGGCGCGTGTGCCAGGTACAGCAGTGAGAACGAATA
TGCCCGACATAGACAAAGAATTGGCGGACAGATTAGGCAGGCTTCAGGGA
CTGTCCACAAGCAGTAGTTCAGGAGGCCATAGCACCGGCGTCGGGCTTCA
AGAACGCCTGGACGCTTTATCTGTGCACTGTCCAGAAGGTGCAGAGGAGG
AGTTCAACAACCGATTAGCTTCGCTTTCAGCAGCAAGAGACACGCCATCC
TCCGCGGAGAATCTCAACACACGGCTCTCTAGGTTAGCGACCGGGAGCGA
TTCCGGGTCCAAGTCAGCTATGGCTGCTCCTGGGAAACGGCAGTACGATG
TACCAGAGGTGGGTAGCGCTGATTATCTCTATGTCTCTTTGGATGTCTGC
CAAACACCCTTCGCAGCAGTTGTGTTGCACTATTTGTTGGAGCTTTTTAT
GTAGCCGATGTACTGCTGTAGGACTGCTGCTGTGCATCCAATGGATGTTG
AACCGCTGGTCTTCGCAACCCTACAGATTCTTGAGTGGCAAGCCTTTTAT
GTCGAGATTGAAGCGCGAGATGTTTCCTGCTCGGCCTGCCAATGACACCC
CATTCTCAACCTCGCAAAACACGAATACGACACATTCAGGACTTTTCCGT
CGAATGGGAAGACCTGGATGATTTGTTGGCAAACGCGCTTGAGGGAAGCG
AAGGTTCGCCTTCAACTGGCGAGCCATCGCTACTGGGGGAGTCCGATGTC
GACCGGAAGCTCAGCGAGCTCGATGTGCTGCTGAGAGCCGAAGCTTCTCG
AGTAACACTCGGCGGCAGCGCCCCAACCGAACACGCCGCGGCGACGGTCG
ACCAAGCGGTGGAGGCATTTCTTGGAGGAGGAGGAGCGGGTGGGGATGGG
GCCGGGCGGGGAGACCAGGGCATGAGAGGCGGTTCACTAAACGTTGAGGA
AGAGCGTCTACTGCAGATGGTGAGTTGAAGCAGGCAATGGCGGGCCAATC
AGTCTGCACCGCACATCTGAGAGAACCTTGCTGACTTATGTACGTAAGGC
CTCTACCTGTGTTCATGGTGGGACTGTGGGGCTATGCACACGTGTTATTT
GGGTCAACAACCGCCAAACACCTTTCTTTGAGCCTCTCCATTTTGTCAAT
AGGCGCTACACGCCGTTGTTTTGGCCCCCCATGGATGATCGCACCACGTT
GTGTTAAAACGTTCAAGCACCCTCGAGGCAGTTACACAGTGCTTACAAGT
GTTTCTGGAAGTGAAAGCACCAGAAAATAAATTAAATCATACGCAGCTGT
CATCCGTATGCAAGGAAGTGAGCACAAGATGCCGAACACCCTTAACAGGA
TGCAGCGCACCCTTCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGC
TTGGTGATGTGAGAGCCTGGTCCGGTGAGGATCCGGCGTGCTCCGTCCCG
GCTTTGTAGGGATGCGAGGTCAATTGTCAAACGACTACGGCATGCACGGC
TATGAGTACATGCCTCAAAAGTGGAGCTTTCAGCTTTGCCTCTTTTCTGA
GTTGTGGGCAACCGAGTTCCCCGTATCATGAAGTACACCCCGCGTGCAGT
TGAATTTTTTTGGCACAGTTTCACGGTTGCATCCTGCTCGTTCGTTCCCG
GTGTGATGACCCAAGAGTCATCATGGATGATGCCTACGATTTTCGAATAC
TCTCCTCTTTCAAATTTTTCAAGTGCTGCTTACGAGCTGCGTACAACCTG
AAGTTTTGGTCGACCCCTCCTTGCGCGGGGGAATGCCGTCATATGTCCCA
TCTGTTCCACGTGTGCATGACACCTCCAGTCGGGCAACAGCTCCTCCCGC
AAATCAATGGCAGAGAGATCTGCCTGTGGCACTACTGGCTCTCCACGCAA
CTGATTTCCGACTGCTTGCATATAGGTGTCCGACCAAGTACTGCTCGAGG
GTGGCGGCCTAATCAAACAAGCATCCGCGCCAGTGCAGGAGAAACCGGGA
GAGATGTGGCTCCCCGTCGCCCCCACAGGCCGACCAGAAATTTCTTCTCC
TGCCGCCGGCGCAAACGTCGGCGCCGGATCAGCAGACGCAAGACTCATCG
CGCAGCAGGCGATGGATGAAGCACGTTTAGGCCTTACCAGCACCAGCGAC
GGGTACAAACCGGCGTCCGAGAATGGAAAAAGTGTGTCACATCGAGATGG
GTGGCAGGCGGCGGCGTGTCCGAAGGATGAAGCGTTGTCATCCTCGTGGT
GCTGCATTTGCAGTGAGGACGCGAGCTTGAGGTGCAGGCCCTGCGAACGG
GAAAACGGTCAGGACGAACCGGAACTCTTTTGCGCGCGGTGCTTCAAGGA
AACCCACAGAGGGGACTCCGAGATGGAGGTGCACCAACCGCAGGCGTTGT
CGAGGGCAAGGCAACAGGAGGAGGACGGGAGAAAAGGCCGTCGAACCTGG
CGGCGCCGGAAGTAATTGTGTGTTCGTGTGATCGTTTGTGAT
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Coding sequence (CDS) from alignment at Scaffold_91:589148..591739+

>EsuBft920_8a-0001 ID=EsuBft920_8a-0001|Name=EsuBft920_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1179bp|location=Sequence derived from alignment at Scaffold_91:589148..591739+ (Ectocarpus subulatus male Bft15b)
ATGCCCGACATAGACAAAGAATTGGCGGACAGATTAGGCAGGCTTCAGGG
ACTGTCCACAAGCAGTAGTTCAGGAGGCCATAGCACCGGCGTCGGGCTTC
AAGAACGCCTGGACGCTTTATCTGTGCACTGTCCAGAAGGTGCAGAGGAG
GAGTTCAACAACCGATTAGCTTCGCTTTCAGCAGCAAGAGACACGCCATC
CTCCGCGGAGAATCTCAACACACGGCTCTCTAGGTTAGCGACCGGGAGCG
ATTCCGGGTCCAAGTCAGCTATGGCTGCTCCTGGGAAACGGCAGTACGAT
GTACCAGAGGACTTTTCCGTCGAATGGGAAGACCTGGATGATTTGTTGGC
AAACGCGCTTGAGGGAAGCGAAGGTTCGCCTTCAACTGGCGAGCCATCGC
TACTGGGGGAGTCCGATGTCGACCGGAAGCTCAGCGAGCTCGATGTGCTG
CTGAGAGCCGAAGCTTCTCGAGTAACACTCGGCGGCAGCGCCCCAACCGA
ACACGCCGCGGCGACGGTCGACCAAGCGGTGGAGGCATTTCTTGGAGGAG
GAGGAGCGGGTGGGGATGGGGCCGGGCGGGGAGACCAGGGCATGAGAGGC
GGTTCACTAAACGTTGAGGAAGAGCGTCTACTGCAGATGGTGTCCGACCA
AGTACTGCTCGAGGGTGGCGGCCTAATCAAACAAGCATCCGCGCCAGTGC
AGGAGAAACCGGGAGAGATGTGGCTCCCCGTCGCCCCCACAGGCCGACCA
GAAATTTCTTCTCCTGCCGCCGGCGCAAACGTCGGCGCCGGATCAGCAGA
CGCAAGACTCATCGCGCAGCAGGCGATGGATGAAGCACGTTTAGGCCTTA
CCAGCACCAGCGACGGGTACAAACCGGCGTCCGAGAATGGAAAAAGTGTG
TCACATCGAGATGGGTGGCAGGCGGCGGCGTGTCCGAAGGATGAAGCGTT
GTCATCCTCGTGGTGCTGCATTTGCAGTGAGGACGCGAGCTTGAGGTGCA
GGCCCTGCGAACGGGAAAACGGTCAGGACGAACCGGAACTCTTTTGCGCG
CGGTGCTTCAAGGAAACCCACAGAGGGGACTCCGAGATGGAGGTGCACCA
ACCGCAGGCGTTGTCGAGGGCAAGGCAACAGGAGGAGGACGGGAGAAAAG
GCCGTCGAACCTGGCGGCGCCGGAAGTAA
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