EsuBft920_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft920_7a-0001
Unique NameEsuBft920_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:592172..597169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft920_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length218
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002670.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft920_7aEsuBft920_7aEctocarpus subulatus male Bft15bgeneScaffold_91 592172..597169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_7a-0001EsuBft920_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 593587..597016 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_7a-0001-exonagat-exon-48735Ectocarpus subulatus male Bft15bexonScaffold_91 592172..593737 -
EsuBft920_7a-0001-exonEsuBft920_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 594059..594186 -
EsuBft920_7a-0001-exonagat-exon-48736Ectocarpus subulatus male Bft15bexonScaffold_91 595173..595307 -
EsuBft920_7a-0001-exonagat-exon-48734Ectocarpus subulatus male Bft15bexonScaffold_91 596813..597169 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_7a-0001-exonagat-three_prime_utr-23078Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 592172..593586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_7a-0001-cdsEsuBft920_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 593587..593737 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_7a-0001-exonagat-five_prime_utr-15009Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_91 597017..597169 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft920_7a-0001 ID=EsuBft920_7a-0001|Name=EsuBft920_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2186bp|location=Sequence derived from alignment at Scaffold_91:592172..597169- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTCTGCCTGCTGCTGACAGACCTGCTCTACGCTGTAACTCCCTGCGTC
CCGCTTACATCACAGAGAAACTGCTGTGCCAAGGTCCCTGTGCGTGTAGC
ACAGCAGGCGGAGAGAGTAAAAGAAGGACCAAGGAGCATTCAAGCCAGCG
AACATGAGCTCCGCAACTGCTGTTGCTGGAGATTCCGGCGAAGCACCTGC
TGCTGCTGGTCAGCCCATGACCACTTGGGTTGACGAGTCGATCGAGAGAT
ACAGCAACCCCGTAGCGTTCGCCAGGAAGAACACACCGATGCCTACGCCC
GAGTTGCAAAAGGAGGTATCCCTCGCCGTTCCAGGGGGGAAGAACGCCAA
ACTCGAGATTCACCTGCTGAAGGAGCGATCGTTCTGGAGCAAGGTTTCGC
TTTTCTGGACGTTCCGGTTGGCAGATGTCGAGGGAGATGACAACGCCGAA
CAGATGGTGGTGGCGCTTGTCTTCGATAGTTGGACGGGATCGATTGAAAT
AAGCGAAAACGCAATCGTCAAGGTAGATGAAATCCAGAAGCCAATAATGG
GCGGCTCTTGGATTACAAAGACTGATTTCGGCCGGTTGGAGATCAAGATC
GTGCCGTACTGGACAGGCGAGATACCAGTACGAGCTTTGGCACGAGGGGA
AGGAGGTGTACACGTTCTTCGCATGAGAGACCGAACTGGGCCCAAGTTGG
ACGCCCGCGCTCTGAAGTGTACGCCTTTCACAGATGTGGGATGCCATTGT
TTTGTACTTCGAAGTAGGTAGAATTTTCGAACCTCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CCCCCCCCCCCCCACCCCTGCGTTGAAGAGATTCCGCCACCTGCAAGAAT
GCTCTCAGTGCTGTCAGGAATATAATCTGTAAGTTATCTTGCTTGTATTG
TGAATGTGTAAGCTGCTTGAGTCGACAGGGAGCTAGCGGCAGGGTACAGT
ACTGCTGCAATACGCAGCTGGTTCCGCACTTACCCACCTTCTCGCGAGGG
TGTTTCGATCTGATTGGGGGAAGGCACAGGCGGGTGAGTACGGCAAGTGG
AAAGTCCATGATTTATAGCAGTAGCGTTGAATAGGATTTCAGCACGTGCA
GCACTGATTGGAGTGCAGATTATCTGAACAGGGTAGCACTGGCGCCTGTG
TCGGAACAGTTAATGGGAGCATGTCGTGGGAACACTCCACTGGGTGACTC
CACGTTTATTTGGACAGAGAGGTGTGTGTTTTGTTTGTGTGTGTGGTCGT
CTGATCTATCCTGGCGCCGGTTTAGAGGCCTTTCGGCGTATATATCTGAC
GTATCAGCCGGGGTCACACAAGAGGAAGGTTACACAGGAGTGTTTTTCAT
AGTTTTGTTTGTTTTATTGCCCCACCTTTCCCCCTGCGATCCTTACCGTG
GTTTATACGAGAGAGTTTTTTTCACCCATCGTGGTGTGGCCTGGCGGATG
ATGTTACTTTGTGCTTTCCCGTTGCATGTGGGGGCAAGCGGATCCAGGGT
ACCGCTCGTTGTTGTGTTTGGACGACAGCACATGCCGTTTTGGTTGCCAA
AACAGTTGTTGAGAGGATATGTTTTTGTAAGTTTGGCGCGTGCAGGCGAG
TGTGGCAGATGACTTGTGTATTTTGGCTATAGTAGAGCGCACGTCGTGAA
GCTTTGGGCATACAGTTTTCTTTGTCACGCGTTTTCTGATACAATTCCGG
GATTGTAGTCCCACATCGGATGATCATTGTGAGTACAGCTGCATTCATGC
CCAAGCTATGCCTCTTGGTCCTATGTACGATTTGATCCGTGTTCGCCCAC
ACCGACAGGGCCGAGATTCGTTCCGTGGTTGACGATATGCGTGTCTGGGA
CGGCAGTTTCACTTGAAAGATTCAGTTTCTCGTCTGTGTGGTGCCATAAC
GTACAAAGGCGTTCGAATCTTGCCGCTATGAGAGGCAAAGACATACGACG
CAAGCAATCGGTTGCGGAGGCGTTTCCACCGACATCACTGTAGACGCTCC
AAAAACAAGACAAACAAAAACACAAGCGCACTCTTA
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protein sequence of EsuBft920_7a-0001

>EsuBft920_7 ID=EsuBft920_7|Name=EsuBft920_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=205bp
MSSATAVAGDSGEAPAAAGQPMTTWVDESIERYSNPVAFARKNTPMPTPE
LQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQ
MVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIV
PYWTGEIPVRALARGEGGVHVLRMRDRTGPKLDARALKCTPFTDVGCHCF
VLRSR
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mRNA from alignment at Scaffold_91:592172..597169-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft920_7a-0001 ID=EsuBft920_7a-0001|Name=EsuBft920_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4998bp|location=Sequence derived from alignment at Scaffold_91:592172..597169- (Ectocarpus subulatus male Bft15b)
TGCTCTGCCTGCTGCTGACAGACCTGCTCTACGCTGTAACTCCCTGCGTC
CCGCTTACATCACAGAGAAACTGCTGTGCCAAGGTCCCTGTGCGTGTAGC
ACAGCAGGCGGAGAGAGTAAAAGAAGGACCAAGGAGCATTCAAGCCAGCG
AACATGAGCTCCGCAACTGCTGTTGCTGGAGATTCCGGCGAAGCACCTGC
TGCTGCTGGTCAGCCCATGACCACTTGGGTTGACGAGTCGATCGAGAGAT
ACAGCAACCCCGTAGCGTTCGCCAGGAAGAACACACCGATGCCTACGCCC
GAGTTGCAAAAGGAGGTATCCCTCGCCGTTCCAGGGGGGAAGAACGCCAA
ACTCGAGGTGCGATAGTGCATGCCCGTTCGTCGTCCAAGTGTGTGTTGAG
CGAGCAGATGCACAGCTCGCGCATCGGATGATACAGCAGCAGTATTGTGG
CAGAGCCGCATGGAGCAGCAGCACGTCTTTCTGTTCGTCAACTCCATAGA
AGACTCTGGCTGGCGCGAGTGTTGTGGTCATCAGCTGCAGCTTTGTGCGT
CTTGTTGTCAGATAGTTTGTATTATACGATGTTGTACGATGTGGGGGCTC
CCGCAAGACGTGATCGAACGGTAGATTCAAAGTAGATTCAAAATAAGGCT
TCTTCGTCGTTTTCCCACAGGCGCACACGCGTATGCCCGCAGCCGTACCC
TGAAGATTGTACACCACCACGCACATCCCCTCAGAGGTAGTGTTTGCTGC
TCTGGGCTCTGGGCGTACCATGAATTGTTTGTTGTCGCGCGAACATACTG
GTTTTTAGACGTGTGGAATTTGAATCGCTGCCAAAATATTGGTATCTCCT
GACAACGCCACCACTGCTGCGTGAGACGGTCCACCGGTTTGGGTCTCCAT
TGAGTTGTGAACGAATTGGGGAAAGTCCAGAGCGTACAAATAGAAAATTA
AGGGCGGTTTTACCTTTGTGGTGTGGTAGCCTCCCTTGTATTCATGGCCT
TCTCTGCCCCCCATTTTCGACACAAACGGAATAGATTCCCCATGTCGCAA
GCTCAAGTCTTAATTACATAAATTGAGAAGCCACATACTCCGCTTCTACA
GAGAACAGCAGTGTACCATATATATAAATGTATATATATTTTCTCCCATC
ATTGGACTCTGTCGTCTGCCCTTCTGGCTCCTATCCTCCACTTCTACCAG
CTAGACTACCCAACCGGGGTCACATAGGAGGGGGGGGCTGGACCCCCCCC
TGCGGTTCCTGCCTGAGATACTTTGATCGCGAGAAGGGTACAGTAATCCC
TTCCCTTGTGACTTGTGAAGTCGATCAAGTTTACTAACATTGAGCTTTGC
AGCGCGTCGCTTCCAACGGAGACCCTGGGTTTAATTAGCGAGAAAATACT
CACTCTGCCGGGACTCGAACCCACCTGGCCCTTGGAAGGCTGCGAGGCTA
CCCACTAGACCACCGGGGCGACCGGTATATATTATTGTTTCGTTCCCAAG
TTGGCATCACTTATCTCGTATGGCTTTACTTTGCATCTATACTAGGCCGC
GCCTCTGTAGCCGAAGACATGCGTTAACAACAAGGAAGGATCGACCAAAC
ATCAACCGCGCGCATCGTGCAGGCGTAGAGGCGCTCTCCTCCTGACAGCA
TCTTTCTACAATAAGCGTGCTGAAAACACATGCCTTCCGAGGCAGAAAGT
TTCCGGCAGTCAATAGTACTTCTCGATCTGTCTCACGTTTGCACCATGTT
GTGAGCGTTCGAGTGGACACTCGGATTTGTTGCGTGGAGAGTTTTTTCGC
CCGGCTCCTGACCCGCCGATGCGTTTTTTCCAAACACCCGCCCTTCTGCC
CGTCGTGATCAGATTCACCTGCTGAAGGAGCGATCGTTCTGGAGCAAGGT
TTCGCTTTTCTGGACGTTCCGGTTGGCAGATGTCGAGGGAGATGACAACG
CCGAACAGATGGTGGTGGCGCTTGTCTTCGATAGTTGGACGGGATCGGTG
AGCTAGGCGTGATTGCTTGTTGAGGGGAGCCTGTAGAATACACCTAGTTT
CAGAGGGAAACACGAACACATATTTTTGGCTGGGAAACAGGTTGATCAAC
TAAGGGCCGTACTCCCAAGACCGGGTCGGAGGGATTTAAGCCTGCGATCA
GTCAGCAGTCTATTCAGGAGTTCGTTCGTTCATGGCGCCTTTTTGGAGAG
CGCCGGAGACATAATTGGACGTGCGCACGAAGGCCCCCGAGGACTTTGAC
TCACTGTGTGCCTGAATGTTGCAGAGTTCGAAACCCACGGAAAGAGAGTG
AGAAATGCAGCCACTGCGAAGCAACATCGACGTTTGCTTGAAAACGCGAC
AAAACTTGAGTATATACAAAACAGGAGTGTGCCGAAACACTACACTTTCT
CGAGCTGTCGTAGACCGGGTCGGAGGAATTGATGTTTGAATTCAGTCAGC
AATGGCGAAGAGGTTCGGTTGCGCCGGCGGACAATAAAACGCTTGAGTTC
GCTCAAAGCATTCCCGAGGGGATAGGGCTTATCGGTGCCGTGTATTGAAA
CATAATACTCCAAAGGAACACGTTACCGTCGTTATCGTACACAGAGCAGG
AGCTTTTTGCCGGCACGATTGCGTTGGCTTTTCACCCTCTTGGCCACCAC
GTTACGTCCACTACTCTGCTCTGTATACAAGATGCCAGTGCAGCGGCTTC
GGCAGAACGATGCAAGCCCGCATTGATTGACGACTATCAAAGAGAGCACC
AGCAAGCAACCGAATGCTCGAAAAAATATGTCCTGTGCAGGAGATGACAC
TTTCGATACTTTGGCACAATGCCGAGAGATTTGCTTTCGCTGGTGCACGT
TTTTTAAACAGGAGCGAGGTCCTTCGCTCAGGGAGTCGACACCTACCGTC
TCGCTCGCCCCCTGCTGTCGCTGTCACTTGTCGTCGCGCTTGCTCCCTCT
TGTCGCCGCGGGCGCGTTACGGATAAACTGCAGATTGAAATAAGCGAAAA
CGCAATCGTCAAGGTAGATGAAATCCAGAAGCCAATAATGGGCGGCTCTT
GGATTACAAAGACTGATTTCGGCCGGTTGGAGATCAAGATCGTGCCGTAC
TGGACAGGCGAGTAGATATTTGTGGTGTGTTACGTGCCAGGAATCCTTTC
GACGCCACTTGTATGTTGTGGAGTCGTCCATGGCGAGCATTGAACACAGC
TATAGGCGAACGAGGCCACACGGTTTATGGTATATAGTACTTTTGACTCT
GGGGTAGAATATGTGCTTCAGGCGCAGGACCAATGCGAAGGGAATACCAC
AGGGCTCATATTTATACTGTTGTCTCTCAGGCGGCGGTAGCATCCTCCGC
CGCTGGGGGTTCTCGAAAAGGTGCCACCAAAGTGTTCGCCTGTGCCTGGC
CGCCCCATGTCGGCTCTGACCTTGCAACACAGGATACCAGTACGAGCTTT
GGCACGAGGGGAAGGAGGTGTACACGTTCTTCGCATGAGAGACCGAACTG
GGCCCAAGTTGGACGCCCGCGCTCTGAAGTGTACGCCTTTCACAGATGTG
GGATGCCATTGTTTTGTACTTCGAAGTAGGTAGAATTTTCGAACCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCCCCCCCCCCCCCCACCCCTGCGTTGAAGAGATTCCGCC
ACCTGCAAGAATGCTCTCAGTGCTGTCAGGAATATAATCTGTAAGTTATC
TTGCTTGTATTGTGAATGTGTAAGCTGCTTGAGTCGACAGGGAGCTAGCG
GCAGGGTACAGTACTGCTGCAATACGCAGCTGGTTCCGCACTTACCCACC
TTCTCGCGAGGGTGTTTCGATCTGATTGGGGGAAGGCACAGGCGGGTGAG
TACGGCAAGTGGAAAGTCCATGATTTATAGCAGTAGCGTTGAATAGGATT
TCAGCACGTGCAGCACTGATTGGAGTGCAGATTATCTGAACAGGGTAGCA
CTGGCGCCTGTGTCGGAACAGTTAATGGGAGCATGTCGTGGGAACACTCC
ACTGGGTGACTCCACGTTTATTTGGACAGAGAGGTGTGTGTTTTGTTTGT
GTGTGTGGTCGTCTGATCTATCCTGGCGCCGGTTTAGAGGCCTTTCGGCG
TATATATCTGACGTATCAGCCGGGGTCACACAAGAGGAAGGTTACACAGG
AGTGTTTTTCATAGTTTTGTTTGTTTTATTGCCCCACCTTTCCCCCTGCG
ATCCTTACCGTGGTTTATACGAGAGAGTTTTTTTCACCCATCGTGGTGTG
GCCTGGCGGATGATGTTACTTTGTGCTTTCCCGTTGCATGTGGGGGCAAG
CGGATCCAGGGTACCGCTCGTTGTTGTGTTTGGACGACAGCACATGCCGT
TTTGGTTGCCAAAACAGTTGTTGAGAGGATATGTTTTTGTAAGTTTGGCG
CGTGCAGGCGAGTGTGGCAGATGACTTGTGTATTTTGGCTATAGTAGAGC
GCACGTCGTGAAGCTTTGGGCATACAGTTTTCTTTGTCACGCGTTTTCTG
ATACAATTCCGGGATTGTAGTCCCACATCGGATGATCATTGTGAGTACAG
CTGCATTCATGCCCAAGCTATGCCTCTTGGTCCTATGTACGATTTGATCC
GTGTTCGCCCACACCGACAGGGCCGAGATTCGTTCCGTGGTTGACGATAT
GCGTGTCTGGGACGGCAGTTTCACTTGAAAGATTCAGTTTCTCGTCTGTG
TGGTGCCATAACGTACAAAGGCGTTCGAATCTTGCCGCTATGAGAGGCAA
AGACATACGACGCAAGCAATCGGTTGCGGAGGCGTTTCCACCGACATCAC
TGTAGACGCTCCAAAAACAAGACAAACAAAAACACAAGCGCACTCTTA
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Coding sequence (CDS) from alignment at Scaffold_91:592172..597169-

>EsuBft920_7a-0001 ID=EsuBft920_7a-0001|Name=EsuBft920_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=618bp|location=Sequence derived from alignment at Scaffold_91:592172..597169- (Ectocarpus subulatus male Bft15b)
ATGAGCTCCGCAACTGCTGTTGCTGGAGATTCCGGCGAAGCACCTGCTGC
TGCTGGTCAGCCCATGACCACTTGGGTTGACGAGTCGATCGAGAGATACA
GCAACCCCGTAGCGTTCGCCAGGAAGAACACACCGATGCCTACGCCCGAG
TTGCAAAAGGAGGTATCCCTCGCCGTTCCAGGGGGGAAGAACGCCAAACT
CGAGATTCACCTGCTGAAGGAGCGATCGTTCTGGAGCAAGGTTTCGCTTT
TCTGGACGTTCCGGTTGGCAGATGTCGAGGGAGATGACAACGCCGAACAG
ATGGTGGTGGCGCTTGTCTTCGATAGTTGGACGGGATCGATTGAAATAAG
CGAAAACGCAATCGTCAAGGTAGATGAAATCCAGAAGCCAATAATGGGCG
GCTCTTGGATTACAAAGACTGATTTCGGCCGGTTGGAGATCAAGATCGTG
CCGTACTGGACAGGCGAGATACCAGTACGAGCTTTGGCACGAGGGGAAGG
AGGTGTACACGTTCTTCGCATGAGAGACCGAACTGGGCCCAAGTTGGACG
CCCGCGCTCTGAAGTGTACGCCTTTCACAGATGTGGGATGCCATTGTTTT
GTACTTCGAAGTAGGTAG
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