EsuBft920_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft920_2a-0001
Unique Name	EsuBft920_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_91	contig	Scaffold_91:632517..637008 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft920_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	442
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft920_2a	EsuBft920_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_91 632517..637008 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_2a-0001-exon	agat-exon-48720	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 632517..636394 -
EsuBft920_2a-0001-exon	EsuBft920_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 636464..637008 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_2a-0001-exon	agat-three_prime_utr-23074	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_91 632517..636169 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_2a-0001-cds	EsuBft920_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_91 636170..636394 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_2a-0001-exon	agat-five_prime_utr-15005	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_91 636536..637008 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_2a-0001	EsuBft920_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_91 636170..636535 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_91:632517..637008-
coding sequence from alignment at Scaffold_91:632517..637008-

spliced messenger RNA

>EsuBft920_2a-0001 ID=EsuBft920_2a-0001|Name=EsuBft920_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4423bp|location=Sequence derived from alignment at Scaffold_91:632517..637008- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCCCGAAAATCCAGTTCGACGGCACGCATCCCATGTCTAGCGTACACA
TAGTCGCGGATACCGTCCTGATGATGGGGATATCCGAAGCTCCCCCGTCG
CGGAAGGACTATCGATTTCACCGCTGCGCGTACTACTCGAGGCCACCAAT
ACTCCCGCACATCCGGCACCACCACGACGGCGTGAGCCCTGCACTCCGAC
AGATGGTGAACAACGTGGCCTGCCATCCCGGGAGGCGGAAAGCAGTACCC
GAACGCGGGTGTACCTACGCCCGGTGTGATCGCCACATCTTGGCAAAAGA
AGTCCACGCCTGCCGTGCCGACACACTGGTACCGCGAGAAAAACGGCAAT
CTACTCGTCAATCCGGAACCCCCTGCCATCGTATACTGCGTGTTATCCGA
GGACGGCATGAGATCGACGGTGAAGTCACCGAAGAATTCGCGCGACCGCT
GAAACGCCACTGGCCGAAGTCGGATGGTTTCGTGGCGGCCCGGTCGTGTA
ATCCCATCTGCTACGCTATTCGCCTCCGACGGGACCCACCGTAGCCGTAA
GCCAAAATTCGTGTTCGACTTGCAGCTCGTACAGGCTGACCAACATCGCA
TGTGTACTGGAATTGCCCGATCGTCCTTTCCGAAACGCGTCTACGACCGC
TCGATTGTCGACATCCATCAATACCTGGGCTCGCTTAAGCTCCCCGGGCC
TGGCTCTACAGCATTCTTTCAGCACTTCGAGCAAGGCAGACATCTCTTTG
CTGTTAATGGACCTGGATAACCATGCGTCTGGGAACCCTCCTCCGGCCGA
AAAATGTCCGCTCGGCAGAGACACCACGCCCCCATATTGGGTAGACGACG
CATCCGACGATGCGGTAGTAAGAGAAACCTCATAATGCCTCGCTTTATAC
CACGGTCCCTCTTGAGCGGTCGACGACAAAGTCAGCCAAATGTTCAGCTC
CGCGCGGAGATCGTGCTTATCTCGCAGCTGAATCTCGTGGCCCTTGGCCT
TCGCAATCGCCGCAAACATATAGTGAGTCCAAAGGGAAGCCGGCCGAATC
GCCACCGACATGCTGACACACTTCCCTGCAATCTTCTCCAACACCCGCAC
TGATACGGAACCCTTTGTAGGCACCTCTTCTCTAAGCTTATGAAGCTTGT
GCAGCTTGTCTTCCGGAATGCGGAATGATGCGGTACGTGAGTCGCATATT
ATCCCCAGATATCGCTGCTGTTGGGACGGGTTGAGATCACATTTCTTGAT
GGACAAGAAATATCCACATCGATACGATACGAGGATACCTTGATGAAGGG
GTTCGGCCGCTGATAGCCATTGCACTCTGTTCGACTCCCCAAAGGTAGCC
ACGAAATTCGCGTCCCACGCATCATCGATGTATGCCAGCACGGGAATACC
CTTGGAACGCATATACGCCGCTTTCGCTTCGCTCAGAGAATGGTAACAAA
ACGGACTCTCGTTCCACCCAAACGGCAGTGTGGTACAAACGTAGTCGACG
CCGTCGTAGTGCACGCCAAACAACGGCCAGCTTTCTGGCTGCAGGCTGAG
GTTGTGGAAACCCGCGCGGTTATCCAAGCTTCCCATGAAAACCCCTTCGT
CCGCCACGAGTGCTACTCTTGAAACCGTGTCCATCGTACACGGCACATGC
TTATAGCACTTGTTAAGAGGGATACCGTTGATAATCATGCGCGGTTTGGT
CGGTTCCACTGAGATAGACAGGATAATCCGCGGTCTATCCGGCCCCCCCG
GTCCTTTTACTTCTCTCCATCGCGCCAAACATCCCCGCTTAGCCAGTGCT
TGTACTTCGAGTCGCACAAATTCGGCATGCTCTTGTGGGATATGGTTAGG
GAGTACGGCCCCCGGAAACGCCTCCGCACGATACGGTTCCTTACGAGACT
TGCCTCGGTACTCGTCGTGAAGGAAATCGAATACACTGACCCCATGTCGG
AGGAAAGAAAGAAGTTGGTCTCGCTGAGGGTGATCACGTAGGATGACTTT
ATCCCAAAATTCCCAGTTATGGTTTAGTCCCCCTGGAACGAAATGTTCGC
CGTTCTCCCCGGCGTCCCGTACGGGTGCTTCCCACGGCATGCGTGTCTGC
CCGTCCCCATACGTGGCACGCTGTGAGTCTGATTCCGTATGCACGCCATC
TACCCTCGGCTGCCCCCGTGACCCCATCCACTCGCGTTGTTCGTCGGACA
AATCGGGGACCTCAGGGAACGCAACCCTTACTTGTGCGTGCCGCCGCGCT
AGGTTCTGCTGCCAATCGTCGGCGAAAACCTAGGTCGACACCACAACATG
AAACATGGTACATCGATATGCAACGATTTTGTAACGGTGGAAATTGGTAC
CTCGTAGAAGGGATTGTCCGTCGGTCTAAATTTGCAACACGAACGAACTA
CGAGCGAACGCAGTTACGATGCACTGAAACCAGACGGACCCACCGAGAGA
CATGGCGGACGTAAGGAGAGCAGATACAACGACACTCCGGGCTGACTATC
TTGCAGTTATTATATGATCTTATCATTTCCCTAATAAGAACCGTCGTAGT
GTTAATACAAGGATGAAAGAAAAAACTGCCGAATTTTGCAGCCAATGCCT
CCGCGTGGCAAAAGGTCGTTGTCTGCTTCTCCCTGATAATCCCACGCCCG
GCCGATCAAAGTATGCCGCGGGGAGTAACGTTCAGGTTGTATTTATATAT
GATTTGTCATTTAGTGGAACGTGCACACATCCACCGCGGATCATGCCCCG
GTCGTTATGGTAAACCGAGGACCGCCTCTATACACCCTGGTACTATGAAC
TCGATTCGAGCGACATACCCCACGTACCGACCCTTTCGTCACCGATCGAT
ACACCCAACATGACAGACGCGATCAACATGTATCCAACGAGTTCAGATTA
CTCTGTCTTTAACTTACTCCGGAACCTTCGACGTCATGGGAACCAAGTAC
ACGTATGACTCCGCTCTATGTTACTCCGTCCTTCATGTGCGACTGGACCT
GCAATTCTCCGACATGATTTCTACACCGGCGGATTCGTGCATGCGGGCGT
CCGGTGGCCGCCTTCTTTGCACCGCGAGCAGATCCAAAACGCGCACCTCA
GGTGGTCGTGGTGTGGGTCCCGATTGTTGGCCACACATTTACGGCACGGG
TCGAACGAACCGGGGATGCCCGGGTTTGCTAGTTGCTGTTGCTGGAGCGC
GTGATTTTTCTGGTTGCGTATGTCGGCCGCCATCCGGAGTTGACTCGCCG
ACATCTGTGCTCCCGTCGTACCCCCCCCGGATCCTCGTCCCCGACCGCCC
GCGTTCCGACCGGGCGGTCCCGGAGTATAGTGCCCAGCCGCTCCTTGCGC
ATAGGGCGAAGCGGCCGACGACCGGGCCTGCCGGCGAGGCTGCCGGAGGG
CATGGGGTTGCCTCCCCTGCCACGGCGCGATCGCCGTCGCGGCCGGGGGA
GGTGGGATGCCGATTGCACTCCCACCCGGGAAGAGCGGCGGCGGCAAGGG
GGGCTGGCCGTACCCCAACCCCCCCATGGCTACTCCCGTGCTCGATATGT
GAACGCCTCCTAAGGATTTGCGGATCCTCGCTACGTCCGCGGCAAAGAGG
TCGTTGGCGACGCCATGCGCATTCGGTAACAAATTGGTGAACATCTCGAG
GACATGGACTCCCGCCGCAGCGCCAGCCGTCCTACCAATCGCCGACACCA
GCCTATCGCCCCGTGCCACCGCATCAGCAATGACCTTTATTTTCGTTGCC
GGCTCTCCCACGGCGGTCATTATCTGGTGTGTCGCTACCAACGCGTTACG
CAGGTTATCCCAGGTATAGAAGCCGCCGATATTGCGCGTAACTTGCAACA
CCGTGAGGAACGCGCTGAAAACCTGTGACGTAAAGCATCGCGTCGAAAAA
CCGGCGTGCGATTGTCTCGTCAAAAACCGTCGGTGCGTTCCCATCGTAGC
TCGTCGTTGTCGCGAAATTCGTGCGAAGAACGAAGGAACCAGGATAGCTC
ATGAATTCGCGTCGAATATCATCGATTTATCCATCGTGGACCGTCGTCAT
TGTCATTCTAACGTAAACACATCGTTAGTGTGTGTCGCAAACCGTCGTCG
TTGTCGCGAAATTTCGTGCAAAAGGAACGGATGGCTCGAAATCGCGCGCA
TCCTCGTATAACGGAAACACATTCTTTGCTTGCGTCGCAACTCTTCGTCG
TCGTCGCTAAAATTCATGTAAACCAACGGATGGCTCGAAACCGCACGCAT
CCTCGCTGAACGTAACACCACGGCCCACGAATTTACGTCGAATATCGTGG
GTTTTAATATGTCGCAAATCGTCGTCGTTGTCGCGAAAATTCGTGCAAAA
CAACAGGATGGCTCGAAGCCGCACGCATCCTCGTTAAACGTAAACACACT
ATTTGCATGCGTCGCAAACCGTC

protein sequence of EsuBft920_2a-0001

>EsuBft920_2 ID=EsuBft920_2|Name=EsuBft920_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=98bp
MVSWRPGRVIPSATLFASDGTHRSRKPKFVFDLQLVQADQHRMCTGIARS
SFPKRVYDRSIVDIHQYLGSLKLPGPGSTAFFQHFEQGRHLFAVNGPG

mRNA from alignment at Scaffold_91:632517..637008-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft920_2a-0001 ID=EsuBft920_2a-0001|Name=EsuBft920_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4492bp|location=Sequence derived from alignment at Scaffold_91:632517..637008- (Ectocarpus subulatus male Bft15b)
TGTCCCGAAAATCCAGTTCGACGGCACGCATCCCATGTCTAGCGTACACA
TAGTCGCGGATACCGTCCTGATGATGGGGATATCCGAAGCTCCCCCGTCG
CGGAAGGACTATCGATTTCACCGCTGCGCGTACTACTCGAGGCCACCAAT
ACTCCCGCACATCCGGCACCACCACGACGGCGTGAGCCCTGCACTCCGAC
AGATGGTGAACAACGTGGCCTGCCATCCCGGGAGGCGGAAAGCAGTACCC
GAACGCGGGTGTACCTACGCCCGGTGTGATCGCCACATCTTGGCAAAAGA
AGTCCACGCCTGCCGTGCCGACACACTGGTACCGCGAGAAAAACGGCAAT
CTACTCGTCAATCCGGAACCCCCTGCCATCGTATACTGCGTGTTATCCGA
GGACGGCATGAGATCGACGGTGAAGTCACCGAAGAATTCGCGCGACCGCT
GAAACGCCACTGGCCGAAGTCGGATGGTTTCGTGGCGGCCCGGTCGTGTA
ATCCCATCTGCTACGCTATTCGCCTCCGACGGGACCCACCGTAGCGTAAG
CCAAAATTCGTGTTCGACNAATCCCATCTGCTACGCTATTCGCCTCCGAC
GGGACCCACCGTAGCGTAAGCCAAAATTCGTGTTCGACTTGCAGCTCGTA
CAGGCTGACCAACATCGCATGTGTACTGGAATTGCCCGATCGTCCTTTCC
GAAACGCGTCTACGACCGCTCGATTGTCGACATCCATCAATACCTGGGCT
CGCTTAAGCTCCCCGGGCCTGGCTCTACAGCATTCTTTCAGCACTTCGAG
CAAGGCAGACATCTCTTTGCTGTTAATGGACCTGGATAACCATGCGTCTG
GGAACCCTCCTCCGGCCGAAAAATGTCCGCTCGGCAGAGACACCACGCCC
CCATATTGGGTAGACGACGCATCCGACGATGCGGTAGTAAGAGAAACCTC
ATAATGCCTCGCTTTATACCACGGTCCCTCTTGAGCGGTCGACGACAAAG
TCAGCCAAATGTTCAGCTCCGCGCGGAGATCGTGCTTATCTCGCAGCTGA
ATCTCGTGGCCCTTGGCCTTCGCAATCGCCGCAAACATATAGTGAGTCCA
AAGGGAAGCCGGCCGAATCGCCACCGACATGCTGACACACTTCCCTGCAA
TCTTCTCCAACACCCGCACTGATACGGAACCCTTTGTAGGCACCTCTTCT
CTAAGCTTATGAAGCTTGTGCAGCTTGTCTTCCGGAATGCGGAATGATGC
GGTACGTGAGTCGCATATTATCCCCAGATATCGCTGCTGTTGGGACGGGT
TGAGATCACATTTCTTGATGGACAAGAAATATCCACATCGATACGATACG
AGGATACCTTGATGAAGGGGTTCGGCCGCTGATAGCCATTGCACTCTGTT
CGACTCCCCAAAGGTAGCCACGAAATTCGCGTCCCACGCATCATCGATGT
ATGCCAGCACGGGAATACCCTTGGAACGCATATACGCCGCTTTCGCTTCG
CTCAGAGAATGGTAACAAAACGGACTCTCGTTCCACCCAAACGGCAGTGT
GGTACAAACGTAGTCGACGCCGTCGTAGTGCACGCCAAACAACGGCCAGC
TTTCTGGCTGCAGGCTGAGGTTGTGGAAACCCGCGCGGTTATCCAAGCTT
CCCATGAAAACCCCTTCGTCCGCCACGAGTGCTACTCTTGAAACCGTGTC
CATCGTACACGGCACATGCTTATAGCACTTGTTAAGAGGGATACCGTTGA
TAATCATGCGCGGTTTGGTCGGTTCCACTGAGATAGACAGGATAATCCGC
GGTCTATCCGGCCCCCCCGGTCCTTTTACTTCTCTCCATCGCGCCAAACA
TCCCCGCTTAGCCAGTGCTTGTACTTCGAGTCGCACAAATTCGGCATGCT
CTTGTGGGATATGGTTAGGGAGTACGGCCCCCGGAAACGCCTCCGCACGA
TACGGTTCCTTACGAGACTTGCCTCGGTACTCGTCGTGAAGGAAATCGAA
TACACTGACCCCATGTCGGAGGAAAGAAAGAAGTTGGTCTCGCTGAGGGT
GATCACGTAGGATGACTTTATCCCAAAATTCCCAGTTATGGTTTAGTCCC
CCTGGAACGAAATGTTCGCCGTTCTCCCCGGCGTCCCGTACGGGTGCTTC
CCACGGCATGCGTGTCTGCCCGTCCCCATACGTGGCACGCTGTGAGTCTG
ATTCCGTATGCACGCCATCTACCCTCGGCTGCCCCCGTGACCCCATCCAC
TCGCGTTGTTCGTCGGACAAATCGGGGACCTCAGGGAACGCAACCCTTAC
TTGTGCGTGCCGCCGCGCTAGGTTCTGCTGCCAATCGTCGGCGAAAACCT
AGGTCGACACCACAACATGAAACATGGTACATCGATATGCAACGATTTTG
TAACGGTGGAAATTGGTACCTCGTAGAAGGGATTGTCCGTCGGTCTAAAT
TTGCAACACGAACGAACTACGAGCGAACGCAGTTACGATGCACTGAAACC
AGACGGACCCACCGAGAGACATGGCGGACGTAAGGAGAGCAGATACAACG
ACACTCCGGGCTGACTATCTTGCAGTTATTATATGATCTTATCATTTCCC
TAATAAGAACCGTCGTAGTGTTAATACAAGGATGAAAGAAAAAACTGCCG
AATTTTGCAGCCAATGCCTCCGCGTGGCAAAAGGTCGTTGTCTGCTTCTC
CCTGATAATCCCACGCCCGGCCGATCAAAGTATGCCGCGGGGAGTAACGT
TCAGGTTGTATTTATATATGATTTGTCATTTAGTGGAACGTGCACACATC
CACCGCGGATCATGCCCCGGTCGTTATGGTAAACCGAGGACCGCCTCTAT
ACACCCTGGTACTATGAACTCGATTCGAGCGACATACCCCACGTACCGAC
CCTTTCGTCACCGATCGATACACCCAACATGACAGACGCGATCAACATGT
ATCCAACGAGTTCAGATTACTCTGTCTTTAACTTACTCCGGAACCTTCGA
CGTCATGGGAACCAAGTACACGTATGACTCCGCTCTATGTTACTCCGTCC
TTCATGTGCGACTGGACCTGCAATTCTCCGACATGATTTCTACACCGGCG
GATTCGTGCATGCGGGCGTCCGGTGGCCGCCTTCTTTGCACCGCGAGCAG
ATCCAAAACGCGCACCTCAGGTGGTCGTGGTGTGGGTCCCGATTGTTGGC
CACACATTTACGGCACGGGTCGAACGAACCGGGGATGCCCGGGTTTGCTA
GTTGCTGTTGCTGGAGCGCGTGATTTTTCTGGTTGCGTATGTCGGCCGCC
ATCCGGAGTTGACTCGCCGACATCTGTGCTCCCGTCGTACCCCCCCCGGA
TCCTCGTCCCCGACCGCCCGCGTTCCGACCGGGCGGTCCCGGAGTATAGT
GCCCAGCCGCTCCTTGCGCATAGGGCGAAGCGGCCGACGACCGGGCCTGC
CGGCGAGGCTGCCGGAGGGCATGGGGTTGCCTCCCCTGCCACGGCGCGAT
CGCCGTCGCGGCCGGGGGAGGTGGGATGCCGATTGCACTCCCACCCGGGA
AGAGCGGCGGCGGCAAGGGGGGCTGGCCGTACCCCAACCCCCCCATGGCT
ACTCCCGTGCTCGATATGTGAACGCCTCCTAAGGATTTGCGGATCCTCGC
TACGTCCGCGGCAAAGAGGTCGTTGGCGACGCCATGCGCATTCGGTAACA
AATTGGTGAACATCTCGAGGACATGGACTCCCGCCGCAGCGCCAGCCGTC
CTACCAATCGCCGACACCAGCCTATCGCCCCGTGCCACCGCATCAGCAAT
GACCTTTATTTTCGTTGCCGGCTCTCCCACGGCGGTCATTATCTGGTGTG
TCGCTACCAACGCGTTACGCAGGTTATCCCAGGTATAGAAGCCGCCGATA
TTGCGCGTAACTTGCAACACCGTGAGGAACGCGCTGAAAACCTGTGACGT
AAAGCATCGCGTCGAAAAACCGGCGTGCGATTGTCTCGTCAAAAACCGTC
GGTGCGTTCCCATCGTAGCTCGTCGTTGTCGCGAAATTCGTGCGAAGAAC
GAAGGAACCAGGATAGCTCATGAATTCGCGTCGAATATCATCGATTTATC
CATCGTGGACCGTCGTCATTGTCATTCTAACGTAAACACATCGTTAGTGT
GTGTCGCAAACCGTCGTCGTTGTCGCGAAATTTCGTGCAAAAGGAACGGA
TGGCTCGAAATCGCGCGCATCCTCGTATAACGGAAACACATTCTTTGCTT
GCGTCGCAACTCTTCGTCGTCGTCGCTAAAATTCATGTAAACCAACGGAT
GGCTCGAAACCGCACGCATCCTCGCTGAACGTAACACCACGGCCCACGAA
TTTACGTCGAATATCGTGGGTTTTAATATGTCGCAAATCGTCGTCGTTGT
CGCGAAAATTCGTGCAAAACAACAGGATGGCTCGAAGCCGCACGCATCCT
CGTTAAACGTAAACACACTATTTGCATGCGTCGCAAACCGTC

Coding sequence (CDS) from alignment at Scaffold_91:632517..637008-

>EsuBft920_2a-0001 ID=EsuBft920_2a-0001|Name=EsuBft920_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=297bp|location=Sequence derived from alignment at Scaffold_91:632517..637008- (Ectocarpus subulatus male Bft15b)
ATGGTTTCGTGGCGGCCCGGTCGTGTAATCCCATCTGCTACGCTATTCGC
CTCCGACGGGACCCACCGTAGCCGTAAGCCAAAATTCGTGTTCGACTTGC
AGCTCGTACAGGCTGACCAACATCGCATGTGTACTGGAATTGCCCGATCG
TCCTTTCCGAAACGCGTCTACGACCGCTCGATTGTCGACATCCATCAATA
CCTGGGCTCGCTTAAGCTCCCCGGGCCTGGCTCTACAGCATTCTTTCAGC
ACTTCGAGCAAGGCAGACATCTCTTTGCTGTTAATGGACCTGGATAA