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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 82508.K1VA87 |
| ProteomeId | EsuBft920_16 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 4751|Fungi |
| Length | 2560 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.27e-35 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VGMM@5234|Tremellales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft920_16a-0001 ID=EsuBft920_16a-0001|Name=EsuBft920_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2560bp|location=Sequence derived from alignment at Scaffold_91:531386..534776- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATTCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATGG CTATGATGACATCCCGTATCAAGACTTTTTCCCCGTGTTTATCCTAGAGA GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGTATTGATGGGGGTGCT GGTTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTTGC TCTTGGTTCGACTGAAAAGTTCGTTGACATCAACTGCTTCCATCGCTCCC TCGCTTGCGAGCCTCTTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTG CTCACGGGCAAGCTGGAACGGTGCACGGACTACATGAGGACGAAGGGCAG GCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGCGGGCGTGTAAGCCACTCG GGCGTGTTCACCTGGACCTGTGTGGACCGCTGGTGCCTTCCCTGGGCGGC AACCTCTACCTGTTCGTCGCCGTGGACAGCGCCTCGCGGTGGAATACGGT CTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGC TGGCGGACGTGGGGCGGTACGACCTCGGGCGCATCGAGTGTTTCCGCGTC TACAACGCACCGAGTGGACCCGCGGCAACTTCCGGCGATTCTTCGACGAC AACGGCATCGGCGTCGAGTTCACCCCGCCTGGCGTTCCGCAGGCCCAGGC CGTCGCCCGCTCCCGTTGCCGCTGCCGCTGCGCCCCCTGCCGCAACGCCG CCGCCAGCGACCACGCCGTCGCCCGCTGCCGCTCCCGCTGCCACTTCGTC CCCTGCCGCAACGCCGCCGCCAGCGACCACGCCGTCGCCCGCTCCCGCTC CCGCTCCCGCTTCGCCCCCTGCCGCAACGCCGCCGTCAGCGACCACGCCG CCGCCCGCTCCCAAGCCTTCACAGCCGCCCTCTGCCACTTCCCCGTCACC GTCGGCGACCCCCGCTCCTGGCCAGACGTCATCTGCCGCTTCGCCGTCAC CGTCGGCGACCCCCGATCCAGACCAGCCGCCGTCGCCGCCGGACCCCGCG ATGCCCCCGCTTAAGGCTCACGCCATGCAGGGGCTTCGCCCGGGTACAAA GGCCGAGGGTATGACAGACCAGCGGCTGCCAAGCCGTACGAGATCGGGAA CAAGGCACAGCACAGGACCCGTCTCAATGCTAGACAAAAACAATCTGGTG TCGATGCTGGAGGCTCGAAGCGCGGTGGATGAGGAGCGCAGGGAGCTGGG GGGGGCGGAGGCCGGAGAGCCGGGGGGAGCGGGGGCCGGAGAGCAGGCAG GAGCACTCGCAGAGGTGGACCCGGGGGCTGGAGGAGCGGGCTTTCCACTC GCATTTGCCACGCTCCTCGCCAACCGGGAAGACACCGATGCCACGCTGCG AGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCGCTGCCAGGCCA GCGACCTTCGTGTTCCAAAGAGCTACAAAGAGGCCATGGCGTCGATGTTG GCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTCAGTTCGATATTGA GCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGACGTGTACATGCGTTTGC CGCAGGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAAGAGT CTGTATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAG CTGTTTGGTGGAGTTAGGTTTTGAGCAGTGCATGGCCGATGCTTGTGTGT TTCGTTTGATTGAGGATGGATGTATTGGTCTGACTTTGGTAGTACATGTA GATGACATTTTTGCTGTGGGAGAGAAGGAGAGATGTGACAAGTTTGGCGC CGACCTTAACAAGCCCATGCCAGTGAAGAACTTGGGAGAGTTGAGATGGT ATTCTGGGTGCTTTTACGAGAGGAACGAGGAGACCGAGCATGGAGTAGTG GGAGGTAAGAGCGTTCCGATGTCTTCGGGGGTGAAGCTTTCTGATTTTCA TGCGGATGAGATAGAGACAGACTATCCGTTTCGTGAACTAGTCGGATCTT TGATGTGGCTGGCGACTCAGACTAGATCACACATTGCGAATGCAGCAAGG GCAGTAGCTAGGTATTGCTCATCTCCAAAGCAGGTCCACTGGGATGCAGC AATAGGTATTTTAGGGTATGCAAGGAAGACGAGTTATTTCGGTATATCAT TTCAGCGAGGTACGGTAGAGGGATTCAGCTTGCAGGGGTACGCTGATGCG GACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGCGGGGATCGT CACATATGGAGGAGGCGCCGTGTCTTGGTTTTCCAGAACGCAGAAGTGTG TTACGCTTTAGACGACAGAAGCAGAGTACGTGGCGCTTGGTGACGTAGTG AAGGAGATCTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCGCAGGT CGGCATGCCGTGCATCCCAGTCTTCGAGGACAACCAGGGGGCGATTCAAC TAGCGCAGAGCCCCATCTCAAACTCGAACTCGAAGCACATAGATGTAAGG CACCGTTTTC back to topprotein sequence of EsuBft920_16a-0001 >EsuBft920_16 ID=EsuBft920_16|Name=EsuBft920_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=786bp
MILGDTSVLTDEQLMDGYDDIPYQDFFPVFILESDAANVAGVLDSIDGGA GFDLGAAALGPGASPFALGSTEKFVDINCFHRSLACEPLLRETAQQRGIV LTGKLERCTDYMRTKGRRGSVPRGPGARACKPLGRVHLDLCGPLVPSLGG NLYLFVAVDSASRWNTVYGLRRKSDALAATKRLLADVGRYDLGRIECFRV YNAPSGPAATSGDSSTTTASASSSPRLAFRRPRPSPAPVAAAAAPPAATP PPATTPSPAAAPAATSSPAATPPPATTPSPAPAPAPASPPAATPPSATTP PPAPKPSQPPSATSPSPSATPAPGQTSSAASPSPSATPDPDQPPSPPDPA MPPLKAHAMQGLRPGTKAEGMTDQRLPSRTRSGTRHSTGPVSMLDKNNLV SMLEARSAVDEERRELGGAEAGEPGGAGAGEQAGALAEVDPGAGGAGFPL AFATLLANREDTDATLRDQRPPEQRPDLPRCQASDLRVPKSYKEAMASML AALACELNLDLCQFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKS LYGLRQASRQWHAMLKSCLVELGFEQCMADACVFRLIEDGCIGLTLVVHV DDIFAVGEKERCDKFGADLNKPMPVKNLGELRWYSGCFYERNEETEHGVV GGKSVPMSSGVKLSDFHADEIETDYPFRELVGSLMWLATQTRSHIANAAR AVARYCSSPKQVHWDAAIGILGYARKTSYFGISFQRGTVEGFSLQGYADA DFASKAADRRSVSAGIVTYGGGAVSWFSRTQKCVTL back to topmRNA from alignment at Scaffold_91:531386..534776- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft920_16a-0001 ID=EsuBft920_16a-0001|Name=EsuBft920_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3391bp|location=Sequence derived from alignment at Scaffold_91:531386..534776- (Ectocarpus subulatus male Bft15b) ATGATTCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATGG
CTATGATGACATCCCGTATCAAGACTTTTTCCCCGTGTTTATCCTAGAGA
GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGTATTGATGGGGGTGCT
GGTTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTTGC
TCTTGGTTCGACTGAAAAGTTCGTTGACATCAACTGCTTCCATCGCTCCC
TCGCTTGCGAGCCTCTTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTG
CTCACGGGCAAGCTGGAACGGTGCACGGACTACATGAGGACGAAGGGCAG
GCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGCGGGCGTGTAAGCCACTCG
GGCGTGTTCACCTGGACCTGTGTGGACCGCTGGTGCCTTCCCTGGGCGGC
AACCTCTACCTGTTCGTCGCCGTGGACAGCGCCTCGCGGTGGAATACGGT
CTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGC
TGGCGGACGTGGGGCGGTACGACCTCGGGCGCATCGAGTGTTTCCGCGTC
TACAACGCACCGAGTGGACCCGCGGCAACTTCCGGCGATTCTTCGACGAC
AACGGCATCGGCGTCGAGTTCACCCCGCCTGGCGTTCCGCAGTACAACGG
CGTCGTCGAGAGCGCCATCTGGCGCATCATGAATGCCGGCATGGCCGCCC
GCCGCAGCGCTGGCCGTGTGTTCTATGTCGACTTCGCCTCCCCGGCCTCG
ACGAGCGCGGTGACCGTCTTTGGATGGAATCAGCGAAATGGGCCGCCAAC
GCTCTCAACCAGTCGGCGACCAAGGCCAACCCCGGGCGGCGCTAGCCGCA
CGAGATGTTCACCGGCGAGCAGGGACCGTTCCGCGTGCTGCCGTTCTTCC
AGCCCGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACGGCCAGGCC
ACCCTCTGCTACTACTTGAACGGCGGCGACAACCACCCGGCGTCCACCGG
CCGCATCGTCTACACCAACAACGTGTCGTGGGCGACGTCGGCGCCAGCCG
GCGAGGGGGTTCCGCTGGTATCACCGCTGCGCCGACACCCCCCCCGTTCC
CGCCGCTGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCGACC
GCCGCACCGCCACCGCCAGGGCCCAGGCCGTCGCCCGCTCCCGTTGCCGC
TGCCGCTGCGCCCCCTGCCGCAACGCCGCCGCCAGCGACCACGCCGTCGC
CCGCTGCCGCTCCCGCTGCCACTTCGTCCCCTGCCGCAACGCCGCCGCCA
GCGACCACGCCGTCGCCCGCTCCCGCTCCCGCTCCCGCTTCGCCCCCTGC
CGCAACGCCGCCGTCAGCGACCACGCCGCCGCCCGCTCCCAAGCCTTCAC
AGCCGCCCTCTGCCACTTCCCCGTCACCGTCGGCGACCCCCGCTCCTGGC
CAGACGTCATCTGCCGCTTCGCCGTCACCGTCGGCGACCCCCGATCCAGA
CCAGCCGCCGTCGCCGCCGGACCCCGCGATGCCCCCGCTTAAGGCTCACG
CCATGCAGGGGCTTCGCCCGGGTACAAAGGCCGAGGGTATGACAGACCAG
CGGCTGCCAAGCCGTACGAGATCGGGAACAAGGCACAGCACAGGACCCGT
CTCAATGCTAGACAAAAACAATCTGGTGTCGATGCTGGAGGCTCGAAGCG
CGGTGGATGAGGAGCGCAGGGAGCTGGGGGGGGCGGAGGCCGGAGAGCCG
GGGGGAGCGGGGGCCGGAGAGCAGGCAGGAGCACTCGCAGAGGTGGACCC
GGGGGCTGGAGGAGCGGGCTTTCCACTCGCATTTGCCACGCTCCTCGCCA
ACCGGGAAGACACCGATGCCACGCTGCGAGACCAGCGCCCGCCGGAGCAA
CGCCCTGACCTTCCGCGCTGCCAGGCCAGCGACCTTCGTGTTCCAAAGAG
CTACAAAGAGGCCATGGCGTCGTAGCACCGGCACCTGTGGAGCGACTCTA
TGCAAAGGGAGTCTTATGGCTTGTTGGAAGCGGGGACCTTTACTCCGTCG
AAGTAGCAATTAGTGGAGAACACAAATAACAATAAGTAGGTATTCGATTG
GAAGGCAGATGAGTTTGGATGGCCCATTAAGGTTTAGTCGAGACTTTTAG
CGAGAGGTGATATGCAGAGAGAGTACATTGACTTTGGAGAGTTGTACGCG
CCTACCGTTTCTGTTTCGTGTGTTAGGATGTTGGCTGCTTTGGCGTGCGA
GTTGAACCTCGACTTGTGTCAGTTCGATATTGAGCAAGCTTTTGTGCGTT
CGGAGTTGGAGGAAGACGTGTACATGCGTTTGCCGCAGGGATGTGGAGCT
CTATCTGGAATGATTGTAAAACTAGGCAAGAGTCTGTATGGCTTGAGACA
GGCATCTAGGCAGTGGCATGCAATGCTGAAGAGCTGTTTGGTGGAGTTAG
GTTTTGAGCAGTGCATGGCCGATGCTTGTGTGTTTCGTTTGATTGAGGAT
GGATGTATTGGTCTGACTTTGGTAGTACATGTAGATGACATTTTTGCTGT
GGGAGAGAAGGAGAGATGTGACAAGTTTGGCGCCGACCTTAACAAGCCCA
TGCCAGTGAAGAACTTGGGAGAGTTGAGATGGTATTCTGGGTGCTTTTAC
GAGAGGAACGAGGAGACCGGTAGGTTGACGATTTCTCAGTAGACTTTCAC
GGATGAGCTAGCAGCAGAGCATGGAGTAGTGGGAGGTAAGAGCGTTCCGA
TGTCTTCGGGGGTGAAGCTTTCTGATTTTCATGCGGATGAGATAGAGACA
GACTATCCGTTTCGTGAACTAGTCGGATCTTTGATGTGGCTGGCGACTCA
GACTAGATCACACATTGCGAATGCAGCAAGGGCAGTAGCTAGGTATTGCT
CATCTCCAAAGCAGGTCCACTGGGATGCAGCAATAGGTATTTTAGGGTAT
GCAAGGAAGACGAGTTATTTCGGTATATCATTTCAGCGAGGTACGGTAGA
GGGATTCAGCTTGCAGGGGTACGCTGATGCGGACTTTGCAAGCAAGGCAG
CAGACCGTAGGTCGGTATCAGCGGGGATCGTCACATATGGAGGAGGCGCC
GTGTCTTGGTTTTCCAGAACGCAGAAGTGTGTTACGCTTTAGACGACAGA
AGCAGAGTACGTGGCGCTTGGTGACGTAGTGAAGGAGATCTTGTTTTTGA
GGCAGGTTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATCCCA
GTCTTCGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAGCCCCATCTC
AAACTCGAACTCGAAGCACATAGATGTAAGGCACCGTTTTC back to topCoding sequence (CDS) from alignment at Scaffold_91:531386..534776- >EsuBft920_16a-0001 ID=EsuBft920_16a-0001|Name=EsuBft920_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2361bp|location=Sequence derived from alignment at Scaffold_91:531386..534776- (Ectocarpus subulatus male Bft15b) ATGATTCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATGG CTATGATGACATCCCGTATCAAGACTTTTTCCCCGTGTTTATCCTAGAGA GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGTATTGATGGGGGTGCT GGTTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTTGC TCTTGGTTCGACTGAAAAGTTCGTTGACATCAACTGCTTCCATCGCTCCC TCGCTTGCGAGCCTCTTTTGAGAGAAACTGCCCAGCAGAGAGGCATCGTG CTCACGGGCAAGCTGGAACGGTGCACGGACTACATGAGGACGAAGGGCAG GCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGCGGGCGTGTAAGCCACTCG GGCGTGTTCACCTGGACCTGTGTGGACCGCTGGTGCCTTCCCTGGGCGGC AACCTCTACCTGTTCGTCGCCGTGGACAGCGCCTCGCGGTGGAATACGGT CTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAAAAGGCTGC TGGCGGACGTGGGGCGGTACGACCTCGGGCGCATCGAGTGTTTCCGCGTC TACAACGCACCGAGTGGACCCGCGGCAACTTCCGGCGATTCTTCGACGAC AACGGCATCGGCGTCGAGTTCACCCCGCCTGGCGTTCCGCAGGCCCAGGC CGTCGCCCGCTCCCGTTGCCGCTGCCGCTGCGCCCCCTGCCGCAACGCCG CCGCCAGCGACCACGCCGTCGCCCGCTGCCGCTCCCGCTGCCACTTCGTC CCCTGCCGCAACGCCGCCGCCAGCGACCACGCCGTCGCCCGCTCCCGCTC CCGCTCCCGCTTCGCCCCCTGCCGCAACGCCGCCGTCAGCGACCACGCCG CCGCCCGCTCCCAAGCCTTCACAGCCGCCCTCTGCCACTTCCCCGTCACC GTCGGCGACCCCCGCTCCTGGCCAGACGTCATCTGCCGCTTCGCCGTCAC CGTCGGCGACCCCCGATCCAGACCAGCCGCCGTCGCCGCCGGACCCCGCG ATGCCCCCGCTTAAGGCTCACGCCATGCAGGGGCTTCGCCCGGGTACAAA GGCCGAGGGTATGACAGACCAGCGGCTGCCAAGCCGTACGAGATCGGGAA CAAGGCACAGCACAGGACCCGTCTCAATGCTAGACAAAAACAATCTGGTG TCGATGCTGGAGGCTCGAAGCGCGGTGGATGAGGAGCGCAGGGAGCTGGG GGGGGCGGAGGCCGGAGAGCCGGGGGGAGCGGGGGCCGGAGAGCAGGCAG GAGCACTCGCAGAGGTGGACCCGGGGGCTGGAGGAGCGGGCTTTCCACTC GCATTTGCCACGCTCCTCGCCAACCGGGAAGACACCGATGCCACGCTGCG AGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCGCTGCCAGGCCA GCGACCTTCGTGTTCCAAAGAGCTACAAAGAGGCCATGGCGTCGATGTTG GCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTCAGTTCGATATTGA GCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGACGTGTACATGCGTTTGC CGCAGGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAAGAGT CTGTATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAG CTGTTTGGTGGAGTTAGGTTTTGAGCAGTGCATGGCCGATGCTTGTGTGT TTCGTTTGATTGAGGATGGATGTATTGGTCTGACTTTGGTAGTACATGTA GATGACATTTTTGCTGTGGGAGAGAAGGAGAGATGTGACAAGTTTGGCGC CGACCTTAACAAGCCCATGCCAGTGAAGAACTTGGGAGAGTTGAGATGGT ATTCTGGGTGCTTTTACGAGAGGAACGAGGAGACCGAGCATGGAGTAGTG GGAGGTAAGAGCGTTCCGATGTCTTCGGGGGTGAAGCTTTCTGATTTTCA TGCGGATGAGATAGAGACAGACTATCCGTTTCGTGAACTAGTCGGATCTT TGATGTGGCTGGCGACTCAGACTAGATCACACATTGCGAATGCAGCAAGG GCAGTAGCTAGGTATTGCTCATCTCCAAAGCAGGTCCACTGGGATGCAGC AATAGGTATTTTAGGGTATGCAAGGAAGACGAGTTATTTCGGTATATCAT TTCAGCGAGGTACGGTAGAGGGATTCAGCTTGCAGGGGTACGCTGATGCG GACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGCGGGGATCGT CACATATGGAGGAGGCGCCGTGTCTTGGTTTTCCAGAACGCAGAAGTGTG TTACGCTTTAG back to top
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