EsuBft920_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft920_14a-0001
Unique NameEsuBft920_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:541015..543903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft920_14
Protein domainsSignalP-noTM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length269
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft920_14aEsuBft920_14aEctocarpus subulatus male Bft15bgeneScaffold_91 541015..543903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_14a-0001EsuBft920_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 543709..543903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_14a-0001-exonagat-exon-48749Ectocarpus subulatus male Bft15bexonScaffold_91 541015..541056 -
EsuBft920_14a-0001-exonEsuBft920_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 541128..543388 -
EsuBft920_14a-0001-exonagat-exon-48748Ectocarpus subulatus male Bft15bexonScaffold_91 543517..543903 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_14a-0001-exonagat-three_prime_utr-23069Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 541015..541056 -
EsuBft920_14a-0001-exonagat-three_prime_utr-23070Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 541128..543388 -
EsuBft920_14a-0001-exonagat-three_prime_utr-23071Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 543517..543708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_14a-0001-cdsEsuBft920_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 543709..543903 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft920_14a-0001 ID=EsuBft920_14a-0001|Name=EsuBft920_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2690bp|location=Sequence derived from alignment at Scaffold_91:541015..543903- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCACGGACCTCTTTATGCCCTCCGCCTGCCACTCTTGATATTTCT
GCCACGTCTTGGCCTCCCGCGCACACACAAGGTTGTTGTACATTTGCAGT
CCGCATGGAGCCGACGGGGTATCTTACTGGTCACGGTTAAAGCTTTCCGA
GAACGCCGCGCAGCCGCGCAGCCAGCCGCGTTTGGCCGTGGGTGAGGGGT
AGGGTTAGGGTTGGGTTAGATACAGTAGGTCGGCCACCGTATGTGACACA
TCCCATGTGTTGAGCGCCTAGGTCCAACATCCGTTTAGACCGACAGCTGG
TCTCAGCGCTCGGCCACCGAGCAACCACTGCTGTTAGTTCCAAAGAGACA
CCAAACTACAGCAGTACAGCAGTACTGGTCTACTGCTCCGAAGAGTAGGG
CGTCACCACACCTATCCGTCACGCAATTCAGATCACTCATCGAATCTCCG
AAGAAACCAAGCAGAAACTCCCTGTTCCTCCGCGATCTACCAACTGCAAT
CTCCGTAGATCCATGTCCCATACTCAACCACATTACTATGCTACGAGTAT
ATCTAACAGCCCCCCTGCTCGTATGCATCGTAATGATACGGCAAGGCAAC
ATAAATCCACTTACGAACCAAAACGTCGTTCCTATTCGTCCGTGACAAAC
AATGAACCAAAAACTCGATTATGCAAATATTCCTGAACCAAAAACGTCTC
TTAGCACACTGCATCCTTCAACTCAGAAAACGCTTTGCTATTGGTCCATC
TGCTCTCTCTGCATCTCGTCGCATTTGTATTCGCCATACATTTCATCCCT
TACGTCTCAAAGGCATTAAACAACCCATTCATGTTAACATAATTATGGAA
GAACTCTTCCATCATTCTTTTCCAAAACAATGATCAATCCTGGATAATCG
CCTTCGAAATACTGCAGATGCATACAGTCATCCCCAAATCCTACATGAAT
ACCAAGACAACATGAATTTCGCAAGGGATAAAATATGCATGTTTGATGCT
TCCGAACACACAGAATGTACCCAGTTCGCAGATAAAACGCGACCAGGAAC
GAATGCTACTCTCACAATTCCGATCAAACAATATCCCCAAAACATTCGGT
CAACGTCAAGACAACTTCCGCAGGTGAAACGCGAATATTTCTTGATTGTA
ACACTCCAGAAACCAAACATCAGCTTTCCGTTCCTCCTCCTGAAAGGATA
GTGTGCCCCTCTTCTCGGGGGGATCTGCCCCCCTGATTTGAGAAGGGGTT
GGAGTCAGAAACACAGACCAAAATAACACATTCAAAGTCCATCCAGTCGA
AAGCTCAAGAAAAAACAATATTTATGCAAATCCGAAAAGCTAATACCAAA
ACCAAATCAAAATCCATTACCAAACAGTTCCAGTCCGAAAGTTCAGACCA
AATCAAAAACCAAAACCAAAATCCAATACCAAAACAAAGACAACATCAAC
ACAAAATCCAATCTAATACCAAAACAAAACAATACTCGAAACCCCTACAT
TTGCCGGCGCATCATCAAGCTCCAGCGCTTAATAACCCATTGCCCAAGCC
ATTGTTTTCCCCCCCGCGGACAATTCGCACGCCTCCGCCGCGGTCGCCTT
CCGCCATCTTTTCCGGCTGGCCGCGGCTCGAGCTTCGATGTTTGCGTCCG
CCTGACTTGGGGGAAGAACAATTGTCGCTCCGAGAGGATTGACTCGGCAG
TGGTGCAGGGCAGGTCGCGCGTTCGGAGGGGATGATGGCGGCAGATTAGT
TCCGAACAAACCAGCACTACTGAGGAGAATCACAAACATACAAACATTCC
CCCCGGTTCTGCAAAGTAGTGACTGCATGCAGCAGAAAAAACAATAAATG
AAACACACGTTCAAGTCGTCGGACCCTACTTGTGGAATGGTTTGTCTGAA
ATTCATTGCCGATGCGATATCGCCACACCATAAATAGCTGAATATCATCC
TGAAACGGAGGTTGATTAGTCCTCTGTTGCAAAATAGTAATCAAGCTGCT
GCTACTGTTCTAACCATAGGGTAATCAATCCTAAGTCAAAACCTTAACAA
CTTTTGGAACCGCAATCTCACAACAAATAGCAATCTCAAGACAACGTACA
ACAATATTAGGAAATCAGCATTTATTTCGTCAATATTGTGAATTTTTAAT
CTGCAACAAGGTGGAGGTACCAATGTTGCACTTCGTTGAGACTTGACACG
TCTCCGGCACTCGCTGACACAACCAAGACATGAAAAGTTTTTGATCAGGT
TAAACCTGCTACCCAAAAAGAGTCCAGATAAAACGTTGATCACGCATTTT
TGATCAGGCTAAACCTGCTGCTCAAAAAGTAGCTACCAAAGAGAGCCCAG
ATAAAACGTTGATCACGCTATTGCCGGGGAGAGAAAGTTGGTCTCAGCAC
GGCTGTCAGGATGACAAAGCAAAAACCTCGCCGATCACTGCATTTCATTA
CGCACAATACTATTTCTAATACCATGCTACACGCACACATCATATCATCA
GTTTAGAAACTGGCATCAGTTTTTGAGGATTACTGGTAACCTGAATTAAT
TGTGTCTACCCGTTATGCTACAGGTAGTCGGCCTTCTTTGGCCGAGCGTT
TGACGGCGGTACCGCGCGACGATGTCGCGATTTTGATTGAGTCTACCGCG
TTGGCGTTTGACGGCAGTACCGCACGGCGTATTGCCGCGT
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protein sequence of EsuBft920_14a-0001

>EsuBft920_14 ID=EsuBft920_14|Name=EsuBft920_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MCHGPLYALRLPLLIFLPRLGLPRTHKVVVHLQSAWSRRGILLVTVKAFR
ERRAAAQPAAFGRG
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mRNA from alignment at Scaffold_91:541015..543903-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft920_14a-0001 ID=EsuBft920_14a-0001|Name=EsuBft920_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2889bp|location=Sequence derived from alignment at Scaffold_91:541015..543903- (Ectocarpus subulatus male Bft15b)
ATGTGCCACGGACCTCTTTATGCCCTCCGCCTGCCACTCTTGATATTTCT
GCCACGTCTTGGCCTCCCGCGCACACACAAGGTTGTTGTACATTTGCAGT
CCGCATGGAGCCGACGGGGTATCTTACTGGTCACGGTTAAAGCTTTCCGA
GAACGCCGCGCAGCCGCGCAGCCAGCCGCGTTTGGCCGTGGGTGAGGGGT
AGGGTTAGGGTTGGGTTAGATACAGTAGGTCGGCCACCGTATGTGACACA
TCCCATGTGTTGAGCGCCTAGGTCCAACATCCGTTTAGACCGACAGCTGG
TCTCAGCGCTCGGCCACCGAGCAACCACTGCTGTTAGTTCCAAAGAGACA
CCAAACTACAGCAGTACAGCAGTACTGGTCTACTGCTGTACTGCGGCTGT
TACAAGTGCGCTGTACGCGAGGGCGCATCCGCAAGCAAGGCCAGGTTGGA
GCTTTTCTGTGGCGGTCTAGCGTTAACGACTTTGTCGAGGGTGATTGGGT
AGCGCCGATGTGCAGCCGAAGAGTAGGGCGTCACCACACCTATCCGTCAC
GCAATTCAGATCACTCATCGAATCTCCGAAGAAACCAAGCAGAAACTCCC
TGTTCCTCCGCGATCTACCAACTGCAATCTCCGTAGATCCATGTCCCATA
CTCAACCACATTACTATGCTACGAGTATATCTAACAGCCCCCCTGCTCGT
ATGCATCGTAATGATACGGCAAGGCAACATAAATCCACTTACGAACCAAA
ACGTCGTTCCTATTCGTCCGTGACAAACAATGAACCAAAAACTCGATTAT
GCAAATATTCCTGAACCAAAAACGTCTCTTAGCACACTGCATCCTTCAAC
TCAGAAAACGCTTTGCTATTGGTCCATCTGCTCTCTCTGCATCTCGTCGC
ATTTGTATTCGCCATACATTTCATCCCTTACGTCTCAAAGGCATTAAACA
ACCCATTCATGTTAACATAATTATGGAAGAACTCTTCCATCATTCTTTTC
CAAAACAATGATCAATCCTGGATAATCGCCTTCGAAATACTGCAGATGCA
TACAGTCATCCCCAAATCCTACATGAATACCAAGACAACATGAATTTCGC
AAGGGATAAAATATGCATGTTTGATGCTTCCGAACACACAGAATGTACCC
AGTTCGCAGATAAAACGCGACCAGGAACGAATGCTACTCTCACAATTCCG
ATCAAACAATATCCCCAAAACATTCGGTCAACGTCAAGACAACTTCCGCA
GGTGAAACGCGAATATTTCTTGATTGTAACACTCCAGAAACCAAACATCA
GCTTTCCGTTCCTCCTCCTGAAAGGATAGTGTGCCCCTCTTCTCGGGGGG
ATCTGCCCCCCTGATTTGAGAAGGGGTTGGAGTCAGAAACACAGACCAAA
ATAACACATTCAAAGTCCATCCAGTCGAAAGCTCAAGAAAAAACAATATT
TATGCAAATCCGAAAAGCTAATACCAAAACCAAATCAAAATCCATTACCA
AACAGTTCCAGTCCGAAAGTTCAGACCAAATCAAAAACCAAAACCAAAAT
CCAATACCAAAACAAAGACAACATCAACACAAAATCCAATCTAATACCAA
AACAAAACAATACTCGAAACCCCTACATTTGCCGGCGCATCATCAAGCTC
CAGCGCTTAATAACCCATTGCCCAAGCCATTGTTTTCCCCCCCGCGGACA
ATTCGCACGCCTCCGCCGCGGTCGCCTTCCGCCATCTTTTCCGGCTGGCC
GCGGCTCGAGCTTCGATGTTTGCGTCCGCCTGACTTGGGGGAAGAACAAT
TGTCGCTCCGAGAGGATTGACTCGGCAGTGGTGCAGGGCAGGTCGCGCGT
TCGGAGGGGATGATGGCGGCAGATTAGTTCCGAACAAACCAGCACTACTG
AGGAGAATCACAAACATACAAACATTCCCCCCGGTTCTGCAAAGTAGTGA
CTGCATGCAGCAGAAAAAACAATAAATGAAACACACGTTCAAGTCGTCGG
ACCCTACTTGTGGAATGGTTTGTCTGAAATTCATTGCCGATGCGATATCG
CCACACCATAAATAGCTGAATATCATCCTGAAACGGAGGTTGATTAGTCC
TCTGTTGCAAAATAGTAATCAAGCTGCTGCTACTGTTCTAACCATAGGGT
AATCAATCCTAAGTCAAAACCTTAACAACTTTTGGAACCGCAATCTCACA
ACAAATAGCAATCTCAAGACAACGTACAACAATATTAGGAAATCAGCATT
TATTTCGTCAATATTGTGAATTTTTAATCTGCAACAAGGTGGAGGTACCA
ATGTTGCACTTCGTTGAGACTTGACACGTCTCCGGCACTCGCTGACACAA
CCAAGACATGAAAAGTTTTTGATCAGGTTAAACCTGCTACCCAAAAAGAG
TCCAGATAAAACGTTGATCACGCATTTTTGATCAGGCTAAACCTGCTGCT
CAAAAAGTAGCTACCAAAGAGAGCCCAGATAAAACGTTGATCACGCTATT
GCCGGGGAGAGAAAGTTGGTCTCAGCACGGCTGTCAGGATGACAAAGCAA
AAACCTCGCCGATCACTGCATTTCATTACGCACAATACTATTTCTAATAC
CATGCTACACGCACACATCATATCATCAGTTTAGAAACTGGCATCAGTTT
TTGAGGATTACTGGTAACCTGAATTAATTGTGTCTACCCGTTATGCTACA
GGTAGTCGGCCTTCTTTGGCCGAGCGTTTGACGGCGGTACCGCGCGACGA
TGTCGCGATTTTGATTGAGTCTACCGGTAATAGGTAGTCGACCTTCTTGG
CCGAGAGGTGGCGGTGGAGAATGAGGTGGAGTTGGAGGTTGCGTTAGCGT
TGGCGTTTGACGGCAGTACCGCACGGCGTATTGCCGCGT
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Coding sequence (CDS) from alignment at Scaffold_91:541015..543903-

>EsuBft920_14a-0001 ID=EsuBft920_14a-0001|Name=EsuBft920_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_91:541015..543903- (Ectocarpus subulatus male Bft15b)
ATGTGCCACGGACCTCTTTATGCCCTCCGCCTGCCACTCTTGATATTTCT
GCCACGTCTTGGCCTCCCGCGCACACACAAGGTTGTTGTACATTTGCAGT
CCGCATGGAGCCGACGGGGTATCTTACTGGTCACGGTTAAAGCTTTCCGA
GAACGCCGCGCAGCCGCGCAGCCAGCCGCGTTTGGCCGTGGGTGA
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