EsuBft920_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft920_12a-0001
Unique Name	EsuBft920_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_91	contig	Scaffold_91:549489..560641 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft920_12
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	275
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft920_12a	EsuBft920_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_91 549489..560641 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_12a-0001	EsuBft920_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_91 552505..560504 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_12a-0001-exon	agat-exon-48746	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 549489..550060 -
EsuBft920_12a-0001-exon	agat-exon-48745	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 550143..551641 -
EsuBft920_12a-0001-exon	agat-exon-48743	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 551812..551839 -
EsuBft920_12a-0001-exon	agat-exon-48744	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 552138..552612 -
EsuBft920_12a-0001-exon	EsuBft920_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 560463..560641 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_12a-0001-exon	agat-three_prime_utr-23064	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_91 549489..550060 -
EsuBft920_12a-0001-exon	agat-three_prime_utr-23065	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_91 550143..551641 -
EsuBft920_12a-0001-exon	agat-three_prime_utr-23066	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_91 551812..551839 -
EsuBft920_12a-0001-exon	agat-three_prime_utr-23067	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_91 552138..552504 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_12a-0001-cds	EsuBft920_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_91 552505..552612 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_12a-0001-exon	agat-five_prime_utr-15001	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_91 560505..560641 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_91:549489..560641-
coding sequence from alignment at Scaffold_91:549489..560641-

spliced messenger RNA

>EsuBft920_12a-0001 ID=EsuBft920_12a-0001|Name=EsuBft920_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2753bp|location=Sequence derived from alignment at Scaffold_91:549489..560641- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGGAAGTTGTAGACGGAAGATTTAGGGGAACTTGGTTTGTCGGGT
CTTCTATTGTAGGACCCTTACGTGGTTGCGGAGCAAGCGCGTCTCGGGGT
GTGTATATTTTCGTCATCAATATTTTTTTTGTGTGTGATGTACGGAGGCA
TGTGCGGCGCGGGAGAACATATTTACCTTACTAATAGCATGTCGTTCAAT
GTGAGAAGGGCACGGGAGAACATTATCTCATCATTACCTCCTGACGTGGC
CGCCGAAAGAGGCGTGTGGTTGGGGTTTCATCACTGACATGTGGGTGTGT
GTTAAATGCAGTGGGTATGGTCGCCTCTCTCGCCCGTGTGTCGGCAGAAG
GTATAGCTACCTTTCCCATTTACTTGTAGGCAGCGCGGACCATAAGTAAT
GACAGAGTGTATCATTTCATGCATCTAAATCATTTGTATGTTGTTGTTGT
TATCTTCACATTAAAAACCGTTCCGATCTCCCTCTACCCAGTACCTTCGT
ATGTCCGTACTGATCCAACACTCGACGCGGTCGATTCCCGTGGTCGCAGG
TTGACTTACCCTAAAAAGGTACACTCAAATATAACTGCCCCGAGGGAATA
GAAATCAACGACAGATATTCTGGAGTCCTCCATTCCCTGCGGGCGCTATA
CAAGGTAGACGGACGTGGAAGGGCGGCGACAGGCGCAGTGCTTCTCTACA
TACATACTATACAGCTTTAGAAACCGTCCTCCTCAAATCCTAACGGAGAT
GATTACGTATCGCACAACGGCTGGATCCGAATATTGCCGGCTAGCTCCGA
AAACCAGGAGAGGTGGGGGAGTAGCTCAGACGAATTCGCTGCGTGTGCGC
TCCTTCATATCTTTTTTCCCAAAAAAAATCAAATTCTTGAAGTAGTAGCA
GGCTCACGGAACTTTATTGTTTCAATAGTTTTTTTTTTGCGAAAAGTTTG
GCCCGTTAAGGGATCGTGTGTGAAGTATGTGCGCACGAGAAAAAGAGCAA
TTTTCGTGCACAGACAGGGGCGTGAAAATCACGCGATGGCTGTCTGTCTG
TCTGTCTACGCGCCCTAAATACCCAGCAGACTCGAGCCTATTTTACCATC
TCGGCACCAAATTGCAAACTAAAACTTGCGCACAACACGTAATAACATTT
TGCCCGAGCTGTCCCAACCGCTACCTTTGCAATCCGTGGTCGGTGTCTCG
AGATAGCACACCGTTTGTGCAAATATATATGTCACATGGACGCATCCCCG
GGAGGCGTCATTTTTGTTTTTTTTTGGCAACAAACTACACGCACGCAAGA
AACCACGACACACTGCCGTGCTGCACACACTGCTGCTGCTACTGGCAAGA
CACGCACTACACAGAGACAGGGAACATGGACAAGGGGGGCGGGACACACA
CACATACTGCTGTTGGCGACGGCGGAGGAAGCGGGGAACGTTTGGTTGGT
CTGGGGTTCATCGCTGATGATGTTGTTGTTGTTGTTTCCGTTGTTTGTTG
TTGTTGTTCAACGCTGCCGGCCTTTTTTTCGCCTTCTTTTCTCTGGAGAG
AGAGGGAGTCCCACCAACCAGCGCGTGTTGCACACACCACACAGCGAGAG
CGGGACGGGAGCAGGGTGTGCCCTATACTACTGCTGCTGCTAGCTTTCGG
CGGAGGAAGCGAGAGGAGAGATATTGATTGGGTCTCTGTGGGTCCATCGG
TTGGTTGTTGTTATTGTGTTGCGACGCGGCGGGAGGGAGCGGCCTCTGAC
TCTGCTCTGGAGAGAGGCACACATACATCACAGCACGGGACCAGTAACAC
ATCACGCTCGTTCCTAGACGATGTAGTACCACTGCTGTGCTGTGCACCTC
TCTACACTCATTGTGGGCGAGAGGGTGTGTCGCCTCTGCTGCTGCTGCTG
TTGCTGTTATCTAAAGCGGTCGCGGAAGCGTCCTGTTCAAACAACCAGCA
ACAGCAGCACCAGCCGGGGAATTTTTCAAGTTTTTTTTTTTTCCTCTCTA
GCTGGTGACGATGGATAGCACACCCCCCTCGCGGCTGACGATGGATACCA
CCCCCCTCGCTAGCTGATGATGGACACCACCCCCCCCTCTAGCGAATGAT
GATGGATACCACCCCCCTCTCTAGCTGGTGATGATGGACCGCCCCCCGTT
CTTCTGTAACAGACGCACGAGCCTACTGCAGGGGCGCATTTTGTTTTGCA
AAAAGCTGGTGAAAGGGACCGTGATGTACGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTCTTCACATTAAACCCNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNCAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCA
GCCCGTGGTCACGAAAGTGCTAGAGCCATCTGCGGATCTAAAGAACACGC
ACACATATAACGAGAAAAAGGTATTCAAGAGAGCCCGAAGAGGTACACCT
AAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAACTGCACGTCC
GTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCTGTCCCACTCTAT
ACCAAAACGGAAGATTGCCGACTACAGCATACTGCTGTCTGCAGTGCTGT
CTG

protein sequence of EsuBft920_12a-0001

>EsuBft920_12 ID=EsuBft920_12|Name=EsuBft920_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MYGGMCGAGEHIYLTNSMSFNVRRARENIISSLPPDVAAERGVWLGFHH

mRNA from alignment at Scaffold_91:549489..560641-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft920_12a-0001 ID=EsuBft920_12a-0001|Name=EsuBft920_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=11153bp|location=Sequence derived from alignment at Scaffold_91:549489..560641- (Ectocarpus subulatus male Bft15b)
ATGTTGGGAAGTTGTAGACGGAAGATTTAGGGGAACTTGGTTTGTCGGGT
CTTCTATTGTAGGACCCTTACGTGGTTGCGGAGCAAGCGCGTCTCGGGGT
GTGTATATTTTCGTCATCAATATTTTTTTTGTGTGTGATGTACGGAGGCA
TGTGCGGCGCGGGAGAACATATTTACCTTGTTTTATTATTATTTTGTTTG
CCCTCCGACAATTGCAGATAAATGCAGACATACATAAAAAGTCGATCGTA
AAGGCCGTCATGCCAAGCCAAATTAACTCGATGCCCAATAGCTAGGAATG
TTTACCTCTAAGTCAACAAAACTTTTGTCGAAACACTACAGCTGAACTCT
AGGCACGAACCTTGGATGGAGAAAAACGAACAAAACCCCAACCTCATCCA
CCCGAAATCAAACAAAACTCGGCCCCGTCTTCCCTGGTACCCCTGATGAC
ACCGTATTGAACAGAAATCCGCTTTCCACCGAAGTGGTTAGGTTATTCGA
GCGAAGCGAGATTTCTAATCTCGCCTGAGGTCTCACCGCAATAATAGGCT
CCATGCAGAAAAAAATAGTTTGTGCGTGTGTTCGCTTAAACTAGGTTTGA
GTGTACAGCAGTACATTACTTGGTATTAAAGGGGGGGGGTCAGCAGACAG
AACACAGAACACACGATGTTGTTGCAGTGCAGACAGAACACGCGCTCAGC
GGGCACGGCGACCCACGCACACCGGTCAGAGCACACCAAGCAGAGCGGAC
ACAGCCACAGCGAGAGACAGCCACAGCGAGTGACAAAAAAGCCAGCATGG
CTATTGCATGAATAGACTTCCGTTGCGGTCGATTGACCCGAACTCTCTCC
GTGAGGCGGAGGCGCACACAGACTCACGGCGCAGACAAAGCCACGGGGAG
AGGGAGTCCCAAGGCAGCCCACAGCTTGACAGGGCGAGAGCTGCTGCTCG
TCAGAGGACTGCCGCCAGGCGTGCGACGGAGACCGATGGAGCACGGGCAG
AAAGGTGCGTTGCGTGTGCGTGTGGGCGGCGATTGCCCCAGGAAATTTAA
TAACCGCAGAGTTCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AGCACTACTACTGCAGACTACTACTGCTTTCTTCTTCCGCGCACACAGCA
CGACTACTGCCCACACACAACACATCGTACACTTCGTACGCACGGCACAC
ACACACAGGCTGCGGGCGGGCCGGCAGAGAGCCGCCGCTACAGCCGCCGC
TAGGCGACTGCGAGGGCAGACACCACAACAGCGGGCGGTCAACCGAGAGA
GAGAGGCTGCGAGGCGCCAGCGGCAAACACCACAGCAGCTGGCGGATAAC
CGAGAGAGAGAGGCTGCGAGGCGCCAGCAGCAGACACCACAAGCGACAGA
GGCCAGGTGTGTGTGCATACAAAAGTTTGTTGGTGCCCAGCATTTTTAAA
CTTGTGCAGACATTATTTCGTCGCATCGTCAACTTGGCATCGTCCACACG
CATCACGCTGCCTCTGCAGATTAGACTAACCTCACGGACCCCACTTCGCA
GGCGTGCAGCGGCTAGAGAACGGGCAGCAGCGGCCAGAGATGCCGAGAGG
GCAAGGCGAGAGAGCGAGGCTCATGTCAAGCGGAGAGACCTTGCGGAGTT
TGACGCTGCTAGGCCGCTAGAAAAGTTGGGTTGGGCCAGAGACGACATGC
AAACCACCTTCCAGCAGCCCATGAGTGCCCGGAGGATGCATGTGTGCACT
GTGTGCTCTGAGCGTTGGGACTCCGCAGAGGACGGACCGGAGGACGGAGG
CGTCTATAGGTGGGTGGTCTTTCGTGTTCAAACGTCTCGGCATGTCGCAA
CTTGTAACATGTTTAAAAACAAAAAAAACGATGTACGGAGCAAAAACAAA
TTAGGTATGAACGGAGGATAACACACGGCCGGGAAAAGAAATATGGAAGA
AATTGCTTTAGAGAGGGCTCGAACTCGATCCGGTTTCGTCGACTTCTTCC
GCGCACGCCTCACATGACAGCGAGTTTGTGTATGCCTTGATATAAGTCAC
GTTACCCTTCTATACCCCACCGCCTGCCGCCCCCACACCCGCTTGTTGGT
ACAGTTGTCCGCGGTGCAAGAAGGACAAGAAGAGTCCGAAGCTGTTCTCC
GCCGACAACACCATGGATCCTGGGAGCGTACCCGTCGAGCTCCAAGGCCT
GACCCAGACGNNNNNNNNNNNNNNNCTAGAGGGTGTGTCCCCATTTCTCC
CGTCGACACCATGTGGCAGGACGGGGGGACGCAGGTCCGGACGCAGCTGC
CCCTTAGGCTCTGCTGGGCAATCACGATGCACAAGTCACAGGGGCAGACT
TTAGCCAAGGCCGTCATAGACTTGGGGCCCAAGGAGGCCTGTACGGGGCT
TACTTTCGTCTGTCTCAGTAGGGCGAAGAGACTTGTGGACCTCATCGTAG
AGCCCATGAGTTTCGACAGGATAGGTAACCTTGGAAACTCATCGACGATG
AAGGGTAGGCTGCAGGAAGAGGTTAGGCTTGGGGAGTTAGCACGGACTAC
GAGGGTCAGGTACACGGACATGGGCGTCTTCGGCGCCGTCGCGGGTAACC
AATGAAGTCAATTGCAAAAAAAAACAATTTCTTCCACCTCCCGCAGACGC
ACACGTCTGACGACAGTTACATCTATCAGCTGTCGCTCGTTGTAGCGACA
GCTATCCTATATTTTACCTTGTTGTGTAGACTAATAGCATGTCGTTCAAT
GTGAGAAGGGCACGGGAGAACATTATCTCATCATTACCTCCTGACGTGGC
CGCCGAAAGAGGCGTGTGGTTGGGGTTTCATCACTGACATGTGGGTGTGT
GTTAAATGCAGTGGGTATGGTCGCCTCTCTCGCCCGTGTGTCGGCAGAAG
GTATAGCTACCTTTCCCATTTACTTGTAGGCAGCGCGGACCATAAGTAAT
GACAGAGTGTATCATTTCATGCATCTAAATCATTTGTATGTTGTTGTTGT
TATCTTCACATTAAAAACCGTTCCGATCTCCCTCTACCCAGTACCTTCGT
ATGTCCGTACTGATCCAACACTCGACGCGGTCGATTCCCGTGGTCGCAGG
TTGACTTACCCTAAAAAGGTACACTCAAATATAACTGCCCCGAGGGAATA
GAAATCAACGACAGATATTCTGGAGTCCTCCATTCCCTGCGGGCGCTATA
CAAGGTAACAACTGAGACTAGGAGTCACCATCACGGACCGGAGAGAATGA
GGTACACCCCCTTGGTTCAATCTTGGTACATCACAACGCAAGCAGAGACA
AGGCCATCTGGCACAGAAACGAGAGAAAAAGACAAGAAGACAAAAAGCGA
AGAAAAGTATGTATGTGGAACGAGAGGAATGAGAGGTTGTTCTAGCTTAC
AAGCAGTTTTGACGGTGTTGTGAATGGGTAGGGGGAGTACTCCCTGTGTC
CGTATTGTTCCAAGATGTTGTCGCATCAAGTGGCAGCATGTGTCATGGAC
AGGTAGACGGACGTGGAAGGGCGGCGACAGGTGAACGGCAGCAGCAGCAG
CAGTATTCTTCTATGTTATGCATGGTGGCATGTTGGGCTTGTACCTAGAC
GCAGTCCATCTTCGACCACACACGAAGGAGTTTGTTCGTACCTGTCGGAG
TTTTGGAGAGCCCAAGTCAGTCGCAAGCAGCGGTAGGAAGGACCGAACAG
GCGCAGTGCTTCTCTACATACATACTATACAGCTTTAGAAACCGTCCTCC
TCAAATCCTAACGGAGATGATTACGTATCGCACAACGGCTGGATCCGAAT
ATTGCCGGCTAGCTCCGAAAACCAGGAGAGGTGGGGGAGTAGCTCAGACG
AATTCGCTGCGTGTGCGCTCCTTCATATCTTTTTTCCCAAAAAAAATCAA
ATTCTTGAAGTAGTAGCAGGCTCACGGAACTTTATTGTTTCAATAGTTTT
TTTTTTGCGAAAAGTTTGGCCCGTTAAGGGATCGTGTGTGAAGTATGTGC
GCACGAGAAAAAGAGCAATTTTCGTGCACAGACAGGGGCGTGAAAATCAC
GCGATGGCTGTCTGTCTGTCTGTCTACGCGCCCTAAATACCCAGCAGACT
CGAGCCTATTTTACCATCTCGGCACCAAATTGCAAACTAAAACTTGCGCA
CAACACGTAATAACATTTTGCCCGAGCTGTCCCAACCGCTACCTTTGCAA
TCCGTGGTCGGTGTCTCGAGATAGCACACCGTTTGTGCAAATATATATGT
CACATGGACGCATCCCCGGGAGGCGTCATTTTTGTTTTTTTTTGGCAACA
AACTACACGCACGCAAGAAACCACGACACACTGCCGTGCTGCACACACTG
CTGCTGCTACTGGCAAGACACGCACTACACAGAGACAGGGAACATGGACA
AGGGGGGCGGGACACACACACATACTGCTGTTGGCGACGGCGGAGGAAGC
GGGGAACGTTTGGTTGGTCTGGGGTTCATCGCTGATGATGTTGTTGTTGT
TGTTTCCGTTGTTTGTTGTTGTTGTTCAACGCTGCCGGCCTTTTTTTCGC
CTTCTTTTCTCTGGAGAGAGAGGGAGTCCCACCAACCAGCGCGTGTTGCA
CACACCACACAGCGAGAGCGGGACGGGAGCAGGGTGTGCCCTATACTACT
GCTGCTGCTAGCTTTCGGCGGAGGAAGCGAGAGGAGAGATATTGATTGGG
TCTCTGTGGGTCCATCGGTTGGTTGTTGTTATTGTGTTGCGACGCGGCGG
GAGGGAGCGGCCTCTGACTCTGCTCTGGAGAGAGGCACACATACATCACA
GCACGGGACCAGTAACACATCACGCTCGTTCCTAGACGATGTAGTACCAC
TGCTGTGCTGTGCACCTCTCTACACTCATTGTGGGCGAGAGGGTGTGTCG
CCTCTGCTGCTGCTGCTGTTGCTGTTATCTAAAGCGGTCGCGGAAGCGTC
CTGTTCAAACAACCAGCAACAGCAGCACCAGCCGGGGAATTTTTCAAGTT
TTTTTTTTTTCCTCTCTAGCTGGTGACGATGGATAGCACACCCCCCTCGC
GGCTGACGATGGATACCACCCCCCTCGCTAGCTGATGATGGACACCACCC
CCCCCTCTAGCGAATGATGATGGATACCACCCCCCTCTCTAGCTGGTGAT
GATGGACCGCCCCCCGTTCTTCTGTAACAGACGCACGAGCCTACTGCAGG
TACTTTTGTGCAACCACCACAAAAAACTATTCCACCTCCAACTCTAGTAG
TTTTTTTATTCAAGAAGAGTGGCCCGGATAGGGGCGCATTTTGTTTTGCA
AAAAGCTGGTGAAAGGGACCGTGATGTACGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTCTTCACATTAAACCCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCA
GCCCGTGGTCACGAAAGTGCTAGAGCCATCTGCGGATCTAAAGAACACGC
ACACATATAACGAGAAAAAGGTATTCAAGAGAGCCCGAAGAGGTACACCT
AAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAACTGCACGTCC
GTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCTGTCCCACTCTAT
ACCAAAACGGAAGATTGCCGACTACAGCATACTGCTGTCTGCAGTGCTGT
CTG

Coding sequence (CDS) from alignment at Scaffold_91:549489..560641-

>EsuBft920_12a-0001 ID=EsuBft920_12a-0001|Name=EsuBft920_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_91:549489..560641- (Ectocarpus subulatus male Bft15b)
ATGTACGGAGGCATGTGCGGCGCGGGAGAACATATTTACCTTACTAATAG
CATGTCGTTCAATGTGAGAAGGGCACGGGAGAACATTATCTCATCATTAC
CTCCTGACGTGGCCGCCGAAAGAGGCGTGTGGTTGGGGTTTCATCACTGA