EsuBft920_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft920_11a-0001
Unique NameEsuBft920_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:561034..564371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft920_11
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length47
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002640.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft920_11aEsuBft920_11aEctocarpus subulatus male Bft15bgeneScaffold_91 561034..564371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_11a-0001EsuBft920_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 563978..564352 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_11a-0001-exonEsuBft920_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 561034..561070 +
EsuBft920_11a-0001-exonagat-exon-48742Ectocarpus subulatus male Bft15bexonScaffold_91 563938..564371 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_11a-0001-exonagat-five_prime_utr-14999Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_91 561034..561070 +
EsuBft920_11a-0001-exonagat-five_prime_utr-15000Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_91 563938..563977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_11a-0001-cdsEsuBft920_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 563978..564352 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_11a-0001-exonagat-three_prime_utr-23063Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 564353..564371 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft920_11a-0001 ID=EsuBft920_11a-0001|Name=EsuBft920_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=471bp|location=Sequence derived from alignment at Scaffold_91:561034..564371+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCGTTGTTCCGGATCGACCTTACGGAAGACGGAAGGAAGACGGTGCTT
TGCGAGTAGGACCGGTCAGCAGCCGCAATGCCTCTCAAGGCACTGAAGAG
TTTCCTCGTGGCCACAGGGCCACTTGCTCTCTTTCTCTTGGTAACGGCCA
CGATGATGCTGCAGCACATCACTGCGATTTGTGATGACGAGTGGGACGCT
TGCTTTGACGATGCCGTGTGCAACTCGTGCTACTACGATTGGGCTGAGTC
TATGGATGCATACAACAAATGCATAGAGGACTATCCCGAGATCGACTACG
ATACAGAGGTTGACTGGTGCTTTGTGTACACGGCTTCCGATTGTTGCAAA
GCTTCGGTGTCCTCCAAAGACTGCCTGGGAAGCACAGCCTTCGTGGACCA
CACGATATGTGAAGCAAATTATTCCGCCACCTCAACGGAGAAGGACGCAT
GAACCCTAATTTTCGTTCGTG
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protein sequence of EsuBft920_11a-0001

>EsuBft920_11 ID=EsuBft920_11|Name=EsuBft920_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MPLKALKSFLVATGPLALFLLVTATMMLQHITAICDDEWDACFDDAVCNS
CYYDWAESMDAYNKCIEDYPEIDYDTEVDWCFVYTASDCCKASVSSKDCL
GSTAFVDHTICEANYSATSTEKDA
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mRNA from alignment at Scaffold_91:561034..564371+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft920_11a-0001 ID=EsuBft920_11a-0001|Name=EsuBft920_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3338bp|location=Sequence derived from alignment at Scaffold_91:561034..564371+ (Ectocarpus subulatus male Bft15b)
CAGCGTTGTTCCGGATCGACCTTACGGAAGACGGAAGGTGTGTGCGCTAC
TCTCTTCCCTTGCTCTAATCTCATCTGTCAGAGCTACAAACTACAACACG
TGTCCACCGACGCATGCATGCGAGGTTTTGTGCACGGGGTGATGCCAAGA
TACAGAGACGGCACCACGCTACCTCCCTGCACGAACAGGTTCTCATCTCT
GTGGTGTGTGGATGTCCTTCAGCCCCAAAAATACCTCCCTTGAGTATATT
TTTTAGCAATACTATTCGTACATAGTCTATATATATAGTCTTTATATTTA
GAATGTCTACTGCTCTGTCGTCTCTGTCGGTTCAACAAGAATTGGTTGGG
AAATCACAGATTTGCGACGAAAATTCTGGGGGTTCGTGTTGGCGTTCGGT
TTCGCTGGCCCGAGGCAGGGGAGGGAATGTCGCACTCGCATTTACCCAGA
CAGTGGCGGGATACCATTTTTGAACCGACCCTACGTGGCGACGAGGAAGA
GGCGATCGTGGTGTCCGCAGCAAGTCGTTGCCTCGTTCACAATTGTTATT
CCTCCACCTCGCCTTCCCGCGCCAATATGGTTCTCAGATAATTAGCCCGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAATATTGC
TGCTAAGAAGCAATTGAGATTCCACCCCCATCCAAAATTGAACCAGCTTG
CCTGATCTCAATGTTCAATATTGGTTCGAGGGGGGAACCGATACCAAACA
AAGATACATATCCAAGATACGTATGTGTGTGTATCTTGTAGTGGGATATG
TATGTGTCTGGAATTCCCAAACCAACAAAAATTTAATTGTGTCAGCAGGC
CTGCACCCTCGACCGTCTCAAACGTGTGTTTTTTGCACGGAAAACAAATG
TACCGGAAGAGGCGGAGAGATGACGCCCCCCCTGAACCGTTATGGAAGCT
CGATTGCTTCATTATCAGGCTTGTGCAACCACCAACTATCGTGGTTTTGG
GAGCATCTCGTTGAGGGCTTTCCGTAGACGTATGTATGGGGCTCTTTCCT
TACCCACATGGTTGTGGAGCAATCCAGCTTCCAAAGTCAGTCTATGGGGG
GCGCCATCTCTCCGCCTCTTATGGTACTACTGAGGACAAACCACATCAAA
TCCACACAAACCCGCAGACACTTCCTTAGACATCAATGCGCAATTGTCTG
TTGGACTTGATTTTTGTTCATTGGATACGAACTGGCCACATTTTTTAATG
TGGTCGCGCAGATTTGTGAAAAATTATGGTCAACACGTGGCGTGCGCGTG
CCTAACTGGAGTAAATATCAAACAGAATCGGAGGTGATTAAGATTTTCAA
AGAGACTGCGAAGTTAAGCACAATCTGTTGGTGTACACCACCCCAGAATT
TTCAGGCCCTCAAAGTTGGCGTGTGCGTGTGTCGGTTGGGCCATGCCTAC
TGATCAACGCGAAACATGGGCGACGTAAAACGCTTCATTTGGTGCGCCCA
AGCGACAATCATCCTTACCTCCGGTACCTGCGAAGACACAGAGCGTGAAT
GTCAGAGCTGGGCGAGAGCTGAAACACATCCAGGGCTACTATGTGAACGA
CACCGAGGGTCGTAGAGACGTCGTTTTTCCTTTTCGCAACGACTGCAATC
CCGACGTTCGGCTGTAGGCACACATCCCACCGTTTCCTGCCCGTAGCAAG
CACAAATAAAAACACACCCACACCGCTCTTTGGCCGATATTCGGGTCAAA
ACACACTACGTTCTGAGTGTCCGCAGCCCATGGCATGCGTTTCCTCCGTA
CTCATACAAACGAAGATACCCGAGCAGCAACGGCGTCTTGTCTCGACATG
AGGCTTCGGCAGCAGCTGCACAAAGATCGAAAAAGGCAGGCAGGCACAAG
CGGGTTTCGCCTGGGCCCTCATTGACGTGCTCGCTTCACGTTTCGGTCGC
GTAACAAACCGATCAGCATTGCGTTACGATTGCCAACATGACACAATACC
CAGTTGAGGTTGCTTTGCTCATCTACCGTCATCATACACACTCACACATG
AAGGTTTGCGCGAATTCAACGTAATGAGAGCCAAAAACTTGGTTTTCCAG
AGGAGGGAGTTGAGAGCTTTGTGGCACAGCTGACAACCGACAGACGCACG
CGCAACGCACACGGGAAGCGACCATCGGCGGTCTCACAGCTTCGTTGTAA
AAGCAGCGCACCAATAACTTGGGTATCAACCCGCTCTTTCTGTGGCATCA
CGCACGAGCCTTTTAGTTGAGCCCCGAGTCAGAGGGCTTGGCGCATGCGC
GGTGTGTGTGGGAAGACGTGCATACAACTGATGGCGAAGAACTGTGATGT
GTTTCGTTTTTTTTAGTGTGGGAGTCTTGCCTTGGTGCTCTCCTCAGCTC
TTGTACCGTTCCTGAGGCACTTTACTGAAAGCCGAAATTTCGGCCCTTTC
CGCTAAGCACCATCAGGTTGCAACGATTCTACACCCATCAACCCCCTGAT
GTATCCTATTGTATGAACAACCTTAGACGTATGGCGTCCACTTTCACCAT
ATCAACCTTGTACCTGGTATCCACCTCGCCCTCCCGCCTTTCTCCTTCGA
GAATACTGCACGAAAGCGGAGAGAAATAAGCTGACCTTTCCCGACAAGGG
TCCGGTTGCTTCTCCGCCGGACAGTCACCTGCCCCACTTCGAAGGTGTTT
CCTCGTGCCCGATACTGTATTATATCAGTATTCTTTCCGATGTACTTATG
TTGCTTGAAATTGGTCCAGGCTGCCACGCATATTCTCCCACGTTCGCTTC
CAAAGCCCCCGGCACCAGTGTTGGGTGTTCCACATTCGCCCAACTAATTT
CGACTGCTTGGATACTGATGAATGTACAACCGTGTACCTGCTGCTGCTTT
GCAGGAAGACGGTGCTTTGCGAGTAGGACCGGTCAGCAGCCGCAATGCCT
CTCAAGGCACTGAAGAGTTTCCTCGTGGCCACAGGGCCACTTGCTCTCTT
TCTCTTGGTAACGGCCACGATGATGCTGCAGCACATCACTGCGATTTGTG
ATGACGAGTGGGACGCTTGCTTTGACGATGCCGTGTGCAACTCGTGCTAC
TACGATTGGGCTGAGTCTATGGATGCATACAACAAATGCATAGAGGACTA
TCCCGAGATCGACTACGATACAGAGGTTGACTGGTGCTTTGTGTACACGG
CTTCCGATTGTTGCAAAGCTTCGGTGTCCTCCAAAGACTGCCTGGGAAGC
ACAGCCTTCGTGGACCACACGATATGTGAAGCAAATTATTCCGCCACCTC
AACGGAGAAGGACGCATGAACCCTAATTTTCGTTCGTG
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Coding sequence (CDS) from alignment at Scaffold_91:561034..564371+

>EsuBft920_11a-0001 ID=EsuBft920_11a-0001|Name=EsuBft920_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_91:561034..564371+ (Ectocarpus subulatus male Bft15b)
ATGCCTCTCAAGGCACTGAAGAGTTTCCTCGTGGCCACAGGGCCACTTGC
TCTCTTTCTCTTGGTAACGGCCACGATGATGCTGCAGCACATCACTGCGA
TTTGTGATGACGAGTGGGACGCTTGCTTTGACGATGCCGTGTGCAACTCG
TGCTACTACGATTGGGCTGAGTCTATGGATGCATACAACAAATGCATAGA
GGACTATCCCGAGATCGACTACGATACAGAGGTTGACTGGTGCTTTGTGT
ACACGGCTTCCGATTGTTGCAAAGCTTCGGTGTCCTCCAAAGACTGCCTG
GGAAGCACAGCCTTCGTGGACCACACGATATGTGAAGCAAATTATTCCGC
CACCTCAACGGAGAAGGACGCATGA
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