EsuBft91_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft91_12a-0001
Unique NameEsuBft91_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_509contigScaffold_509:199479..204243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNH9
ProteomeIdEsuBft91_12
Protein domainsIPR017986
Protein domainsIPR001680
Protein domainsIPR019775
Protein domainsPTHR22850
Protein domainsIPR015943
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized wd repeat-containing protein alr2800 os:nostoc (strain pcc 7120 utex 2576) gn:a [Automatic annotation]
Nb exon9
Max annot lvl2759|Eukaryota
Length1557
Hectar predicted targeting categoryother localisation
Evalue1.15e-228
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-01_005390.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionWD repeat-containing protein
COG categoryB
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO1990234
GO0044451
GO0016573
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft91_12aEsuBft91_12aEctocarpus subulatus male Bft15bgeneScaffold_509 199479..204243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_12a-0001EsuBft91_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_509 200040..204243 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_12a-0001-exonagat-exon-84553Ectocarpus subulatus male Bft15bexonScaffold_509 199479..200123 -
EsuBft91_12a-0001-exonagat-exon-84555Ectocarpus subulatus male Bft15bexonScaffold_509 200396..200488 -
EsuBft91_12a-0001-exonagat-exon-84558Ectocarpus subulatus male Bft15bexonScaffold_509 200853..200951 -
EsuBft91_12a-0001-exonagat-exon-84554Ectocarpus subulatus male Bft15bexonScaffold_509 201422..201506 -
EsuBft91_12a-0001-exonagat-exon-84557Ectocarpus subulatus male Bft15bexonScaffold_509 202089..202228 -
EsuBft91_12a-0001-exonEsuBft91_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_509 202519..202650 -
EsuBft91_12a-0001-exonagat-exon-84559Ectocarpus subulatus male Bft15bexonScaffold_509 202980..203077 -
EsuBft91_12a-0001-exonagat-exon-84560Ectocarpus subulatus male Bft15bexonScaffold_509 203424..203538 -
EsuBft91_12a-0001-exonagat-exon-84556Ectocarpus subulatus male Bft15bexonScaffold_509 204094..204243 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_12a-0001-exonagat-three_prime_utr-23041Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_509 199479..200039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft91_12a-0001-cdsEsuBft91_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_509 200040..200123 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft91_12a-0001 ID=EsuBft91_12a-0001|Name=EsuBft91_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1557bp|location=Sequence derived from alignment at Scaffold_509:199479..204243- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACACCACGCTGTGTGCTGTGCCGAAACATCCACTGACTGCCCTGG
GCGAAGCCTTTTGGCAGCGGCATGCGGCGACGGAACGATCCGCATCTTCC
ACGTGTCCACCGGACGCCTGGCATACAACTTGCAGAGCAGCTCGTCGCAG
TCTCTACCGACCACGTCGCTGCGATTCAGGCCAGCCATAGCTCAGAGTAA
GACGAGGAACGTCCTGGTGTCTTGCAACGCTGGGGGAGAGATCCAGCACT
GGCATATCACCTCCGGGAAGTGTCTGAGCACGATCAAGGAGGAAGATCAG
TTCTATGCCCTCGACTATCGCAAAGACGGGAGCGTGTTCGCCGCCACCGG
GAAGAATCACACGGTACACATTTATGACGAGACGACGAAGCACGAGATTT
CCCTGCTGCAGGGAGGCAGCGGCTACGGCTCGAGCTCGGCACCGGGCCAC
TCCAACCGAGTCTTCGCCGTCAAGTTCCACCCCGAAGATCCCGAGGTGCT
CCTGACTGCAGGGTGGGACAACACCGTCCAGTTCTGGGACATGAGGGTGG
GACACTCGGTGAGGAGCATATTCGGCCCGCACATTAGTGGCGACTCGTTG
GACATTTGCGGGAACGAGATTCTCACAGGGTCCTGGCGGCCAAACAACCC
GCTCGAAATCTGGGACTACAGGACGGCAGAGCTGAAGGAGACCATCTCAT
GGAATCGGTCGTCCGCCCAGGGAGTACAACCGACGTTGTTGTACACGGCC
CAGTTTAGCAACACCGCGGATGGAGGACGGTATATCGCAGCTGGGGGGAG
TGGAGCGAACGAGGCCAAGATATTTGACCATACCGCCAACAACCAGCTCG
TCGGGACGGTGACCGGCTTGCCTCGCGGGGTGTTTACAGTGGATTTCTCC
CCTTCCCCAGATGCGAAGAAGGTGGCGGTGGCAGGAGGGGACGCGTCGAT
TCGCATCATCGACATTGTCGAAGAGAAGACGGCTGACGTTTACTAACTAG
TAGAGGGTTCAACCCCGTGTTTATTTCTGGTGTAATCACACTTATGGAAT
GGCACCTCCAGTTGCTGTCTCGCAGTTCTTGGCAGTTTTCCTTGGGAAAT
CTCCGCACCATGACGGACCGCGTGGTTGGTGTATTGTTGGAAAGTGATAT
TATCATTTTCAGTTTGCGGCTGGGGAATAGTCGAGGGAGCGCAAGGCGAA
CGGCATTCTTGATTGTGGAATAGCACATCCATGCAGACACACCGTGTTTT
CACCAGCAAGCGTCAGAACTGTAGCAGCAAGATTTCAGCGACTGAAGTGC
CCTTGAAAGAGTTTTCAACCGGGCGAGCAGCTGCGGGGCGCTTAAGGCAT
GAAGCAGTATTTCGGTGGGATCTGTGTTGCTATCTGTTGATGCTGCACAG
CAGATTATTATAGTCGCCTGCCTCGAGGGGGGGGATCTGGTGTATGTGTT
AACGCAAGTTTTTTCAGAGAGACGGCGCTTGTTGTTACACGCCATGATCA
GGTGTTCTCGGACCGTTGTCAATCGTCCCCTTGCGTGGTTAATGTGTTCT
CCGCAAA
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protein sequence of EsuBft91_12a-0001

>EsuBft91_12 ID=EsuBft91_12|Name=EsuBft91_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=331bp
MKHHAVCCAETSTDCPGRSLLAAACGDGTIRIFHVSTGRLAYNLQSSSSQ
SLPTTSLRFRPAIAQSKTRNVLVSCNAGGEIQHWHITSGKCLSTIKEEDQ
FYALDYRKDGSVFAATGKNHTVHIYDETTKHEISLLQGGSGYGSSSAPGH
SNRVFAVKFHPEDPEVLLTAGWDNTVQFWDMRVGHSVRSIFGPHISGDSL
DICGNEILTGSWRPNNPLEIWDYRTAELKETISWNRSSAQGVQPTLLYTA
QFSNTADGGRYIAAGGSGANEAKIFDHTANNQLVGTVTGLPRGVFTVDFS
PSPDAKKVAVAGGDASIRIIDIVEEKTADVY
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mRNA from alignment at Scaffold_509:199479..204243-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft91_12a-0001 ID=EsuBft91_12a-0001|Name=EsuBft91_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4765bp|location=Sequence derived from alignment at Scaffold_509:199479..204243- (Ectocarpus subulatus male Bft15b)
ATGAAACACCACGCTGTGTGCTGTGCCGAAACATCCACTGACTGCCCTGG
GCGAAGCCTTTTGGCAGCGGCATGCGGCGACGGAACGATCCGCATCTTCC
ACGTGTCCACCGGACGCCTGGCATACAACTTGCAGAGCAGCTCGTCGCAG
GTGATTAGACTATGCTCACAAAAAGTTTCCTGGGTTGAGACCTACCCCCG
AGGAAAAATCAGCATGGTCACTCTCATGTCTAGTAAACGCCCTTGGGTTG
CCTACATATGTTCGAAGGTACAGCATACCTGGTGTAGTACAGATCTAGTA
TGTGCTTGTTCGCCGTCATGGTGCCAGATCGGTGTTAGGGAATTTCCGTC
ATACGGCCTAGTACGTACTTCGAATGTCTTACAGCAGTCATGTACAAGGG
CCTAGCATGAGGCGACAACGGCGGTGCTTTCCACGAAATATTGCGACCGG
CCAATAGATTATATTCGGCGAGCAGTACAGCTACTTAATGTTGGCACTCA
CCGGGTGGGAGGTTTCTCCTAAAACCGATTTAGTGGCATAGGTGACAGCC
ACTGGTTTTTGACGAGCATCATCATTCGTTTAATTGCATGCCGGATGATT
TCTCCCTTGATTACCGTCTGTCTTTGCATTCCTGTCTCTCGTGTTCCCTG
CGGTCATGCTGCCTGTGTGCTCCCGATTGTAATTGACACGCTACGCGTTG
CGCAGTCTCTACCGACCACGTCGCTGCGATTCAGGCCAGCCATAGCTCAG
AGTAAGACGAGGAACGTCCTGGTGTCTTGCAACGCTGGGGGAGAGATCCA
GCACTGGCATATCACCTCCGGTACGTTCATACGGTAGGACAACAGCGCTT
ACAAGATGTCTGGTTCATTCCCCGCTCCTTGATCAAAACCTGAACTTACA
CACGCCTCTGCTGGAGACAAGAGAGCAATAGTTGGCCTGTTGGTGCAAAG
TAGGAGAGGCGCCGAAGCGATTCTGGCTCAGGGTACTCTCACAGTACCAA
GCGGCGCGAGAGGGCTGGAGAACGGAGGCACGTGTGTGCTAACGTGGCTT
GATCGGTTGGTACAGCGGTTCAAATGACGCGCCCCTTGCTCCCCGCCGTT
TTCCCTCCAAGTGTTCATGTCGGCCTTTTGTGCAACAACAATGTTTCCTT
TCTACCTGTGAGTCAGGGAAGTGTCTGAGCACGATCAAGGAGGAAGATCA
GTTCTATGCCCTCGACTATCGCAAAGACGGGAGCGTGTTCGCCGCCACCG
GGAAGAATCACACGGTACGAACACCCCTTGACCGTGGCGGAATTGACGAC
CACGGGTGGTCGAGGTTTGACCCGAAATTTTGTTTGGGTTGGCAGAAAAG
CCGAATTTGGTTGGTTTCGCCTAGTTCGCCGCCTCAACCTCAATGAAGCT
AGCAACCACGTTCTAATCCAGTTGTGGATCCTCACCTCTGCTACGACGTT
GATACTTGTCGACAAAGTCACGCGGCTGCCTTGTCGACAAAGTCACGCGG
CTGTGTTTTCTCCTCAAGATATTACACAACGGGCAGGTTACGTTTTTTCC
CGCGACTTGTGCACGGCTTACCAAACCGAACTTTGAACTGCAGGTACACA
TTTATGACGAGACGACGAAGCACGAGATTTCCCTGCTGCAGGGAGGCAGC
GGCTACGGCTCGAGCTCGGCACCGGGCCACTCCAACCGAGTCTTCGCCGT
CAAGTTCCACCCCGAAGATCCCGAGGTACGCGTTTTTTGGGGGCTACTTA
TTGTGGTTGATTACGCCTACCTGGACATTTCTATCCTTAGCAAATGTGTG
CGAGGTGTGCTTCGGCCGCTTTCCCAAGTACCACGAACTTTGAACGATAC
TCTGCGGCCACACAAATCGGCCACGGAATCAATGATTTGACCAGCGCTAG
ATCGTTAGATGTGCGAACAAACGCCCGAAAGCATTAACACCGTCTCACAG
CCGAGTCACACAACATTTTGATTCCAATCAACGAATCCAAATCTCGACCG
ACGACCAAAACCAAGGTGCTCCTGACTGCAGGGTGGGACAACACCGTCCA
GTTCTGGGACATGAGGGTGGGACACTCGGTGAGGAGCATATTCGGCCCGC
ACATTAGTGGCGACTCGTTGGACATTTGCGGGAACGAGATTCTCACAGGG
TCCTGGTGAGTGGTTCTCTTGCTTCTTCAAACTTCACTATTATTGTAATT
GTTCGAAATCGCGCGTCGTCCAAACCGTGTGCATACTCGTATATCTGGGT
CGCGTGCGTCTGCTTCACATATTTAATACACGAAGAGAAGAGGTTTGCAT
ACACATCATTTGCAACAGAATATCGCCTTTGGGTTTGTACAGTTCGTGTG
AGTTCCGCTTGCTTGTTTTGTCACTTTTGTATTGTTTCATTCCAGGGGGC
ATGTGCACAGAAACGGATGTGTGCGATGCGAGGCTGCTGAGTTTGGATAT
TCAGACGTGCGTTGGGTTGATGGCCGCGTATAGGTCGCGGGACTCACGCG
CGCGTTATGTGTGTTGCAACGCCCGGGGCATACGATCGAATACACTCCTG
TTGCGTCTTTTGTCCAGTTGCTCGCGACGAATCTGGAACGTGCGAGGATA
CCTTTGTTACGGTACCTGCGCTGGTCTCACCTATAGCTACTACACAGGGG
GGTCGATACACCGGCACCAGATTGTGGAGAATTGGGTGTTGTTGGGGGTA
TAAATCACCGTTATGCCCCCCCGGCGACGCTCTGCAGGCGGCCAAACAAC
CCGCTCGAAATCTGGGACTACAGGACGGCAGAGCTGAAGGAGACCATCTC
ATGGAATCGGTCGTCCGCCCAGGTGACCACGCAAATAATGCAACGGGCTT
AGAGCATTGAGCATCGAAGTCCTTGGGTTTCTATTTAGAAGGGCGTTTTC
GTGGTTCGATACACCAAGGCAAACACACTCTGGGCCGCCGGTATTTGGGC
TAGTGGGCGGGCAGACGACAGACCTAGGACGCGTATCAACACGTACAACA
AGCAAACACTCAGCGTGCTGCCCTTAGATTCCTATGTTGATTTTGCCGGA
CTAGTTTAGGCCTGCGCCATTGCCCGGTGACCGCCGTGGCGAAATCGATA
CACGCGAAAAATCGTTGGTACGTGACATGTTGTCGGAGTGGGGGTTTTGA
CGTTGAGCGTTGTGTAAACCCTCTCGTAGATTCAGAGAGAGCGGGCAGGG
GCCTCGATTCAACCTCTTCGCCGTCACAGCAGTAGTGGTCGGAACCCAGA
TCACAAAGTTGTCGTTCGCGTGTGTCTCTTTTTTGCCCACAGGGAGTACA
ACCGACGTTGTTGTACACGGCCCAGTTTAGCAACACCGCGGATGGAGGAC
GGTATATCGCAGCTGGGGGGAGTGGAGCGAACGAGGCCAAGGTGTGCTGA
GAGTTCTTGCTTAGCTTCCCTCTTTCCCCGCGCAGCGGTGTATTTGTCGC
CCAAGGGTTGGTTGTGTTTCTTTTTTTTCCTCGTTGAATTATCGACCTTT
TCGAGAAGAGCGCATTTAACGGGCTTGCTCGGAGGGTGACCGCCGGTTTC
GTGGTGCCCATAAGTTTTGGCACAATTCACGACTTCACGCTTTGCGACGA
CAAAATGTTGTGGTCCTTTCGCTCGTTCTTGCGTCGTTCATTGCCTTCAC
CTCTGTCTTTGGATTCCATGGGCCGACTTGGTCATCGATGTCGTGTGTCT
CGTTCTCACGTCACTCGTCCCTCCCGCCCCCCTCCTCCCCCACTCTTTCC
TGCAGATATTTGACCATACCGCCAACAACCAGCTCGTCGGGACGGTGACC
GGCTTGCCTCGCGGGGTGTTTACAGTGGATTTCTCCCCTTCCCCAGATGT
AAGACTCCATCGGGATTGGGGGTAGCGCACCGGGTTCGTGGTGTCGCCTC
CTTTTCGGGGTAATGGAACCCAATCTTCGCCCTCGATGCATGCGTTACGT
TTTGTGATTGAACCAGGCAAGCGCAGACATACTCGCATTCCACCAAACGG
TAACGTATCATCATTTCAAAGTCGTCGATTCGGACAGCCGAATCCCTCAA
ACGTATGTGCTCCGCCGTCGATGCTTGTATGTACGCACGCCCCTCCGTCA
TTGCGTTCCGAACACAATAGGCGAAGAAGGTGGCGGTGGCAGGAGGGGAC
GCGTCGATTCGCATCATCGACATTGTCGAAGAGAAGACGGCTGACGTTTA
CTAACTAGTAGAGGGTTCAACCCCGTGTTTATTTCTGGTGTAATCACACT
TATGGAATGGCACCTCCAGTTGCTGTCTCGCAGTTCTTGGCAGTTTTCCT
TGGGAAATCTCCGCACCATGACGGACCGCGTGGTTGGTGTATTGTTGGAA
AGTGATATTATCATTTTCAGTTTGCGGCTGGGGAATAGTCGAGGGAGCGC
AAGGCGAACGGCATTCTTGATTGTGGAATAGCACATCCATGCAGACACAC
CGTGTTTTCACCAGCAAGCGTCAGAACTGTAGCAGCAAGATTTCAGCGAC
TGAAGTGCCCTTGAAAGAGTTTTCAACCGGGCGAGCAGCTGCGGGGCGCT
TAAGGCATGAAGCAGTATTTCGGTGGGATCTGTGTTGCTATCTGTTGATG
CTGCACAGCAGATTATTATAGTCGCCTGCCTCGAGGGGGGGGATCTGGTG
TATGTGTTAACGCAAGTTTTTTCAGAGAGACGGCGCTTGTTGTTACACGC
CATGATCAGGTGTTCTCGGACCGTTGTCAATCGTCCCCTTGCGTGGTTAA
TGTGTTCTCCGCAAA
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Coding sequence (CDS) from alignment at Scaffold_509:199479..204243-

>EsuBft91_12a-0001 ID=EsuBft91_12a-0001|Name=EsuBft91_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=996bp|location=Sequence derived from alignment at Scaffold_509:199479..204243- (Ectocarpus subulatus male Bft15b)
ATGAAACACCACGCTGTGTGCTGTGCCGAAACATCCACTGACTGCCCTGG
GCGAAGCCTTTTGGCAGCGGCATGCGGCGACGGAACGATCCGCATCTTCC
ACGTGTCCACCGGACGCCTGGCATACAACTTGCAGAGCAGCTCGTCGCAG
TCTCTACCGACCACGTCGCTGCGATTCAGGCCAGCCATAGCTCAGAGTAA
GACGAGGAACGTCCTGGTGTCTTGCAACGCTGGGGGAGAGATCCAGCACT
GGCATATCACCTCCGGGAAGTGTCTGAGCACGATCAAGGAGGAAGATCAG
TTCTATGCCCTCGACTATCGCAAAGACGGGAGCGTGTTCGCCGCCACCGG
GAAGAATCACACGGTACACATTTATGACGAGACGACGAAGCACGAGATTT
CCCTGCTGCAGGGAGGCAGCGGCTACGGCTCGAGCTCGGCACCGGGCCAC
TCCAACCGAGTCTTCGCCGTCAAGTTCCACCCCGAAGATCCCGAGGTGCT
CCTGACTGCAGGGTGGGACAACACCGTCCAGTTCTGGGACATGAGGGTGG
GACACTCGGTGAGGAGCATATTCGGCCCGCACATTAGTGGCGACTCGTTG
GACATTTGCGGGAACGAGATTCTCACAGGGTCCTGGCGGCCAAACAACCC
GCTCGAAATCTGGGACTACAGGACGGCAGAGCTGAAGGAGACCATCTCAT
GGAATCGGTCGTCCGCCCAGGGAGTACAACCGACGTTGTTGTACACGGCC
CAGTTTAGCAACACCGCGGATGGAGGACGGTATATCGCAGCTGGGGGGAG
TGGAGCGAACGAGGCCAAGATATTTGACCATACCGCCAACAACCAGCTCG
TCGGGACGGTGACCGGCTTGCCTCGCGGGGTGTTTACAGTGGATTTCTCC
CCTTCCCCAGATGCGAAGAAGGTGGCGGTGGCAGGAGGGGACGCGTCGAT
TCGCATCATCGACATTGTCGAAGAGAAGACGGCTGACGTTTACTAA
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