EsuBft919_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft919_7a-0001
Unique NameEsuBft919_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_11contigScaffold_11:167458..169847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft919_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length239
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft919_7aEsuBft919_7aEctocarpus subulatus male Bft15bgeneScaffold_11 167458..169847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft919_7a-0001-exonEsuBft919_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_11 167458..169847 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft919_7a-0001-exonagat-three_prime_utr-23035Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_11 167458..169661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft919_7a-0001-cdsEsuBft919_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_11 169662..169847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft919_7a-0001EsuBft919_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_11 169662..169847 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft919_7a-0001 ID=EsuBft919_7a-0001|Name=EsuBft919_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2390bp|location=Sequence derived from alignment at Scaffold_11:167458..169847- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATCGAGATGGAGACGGATCTCGGCAAACAAGACGGCTCTCTGCG
AACGTACTTGCTCGCACGCAGCTACGATAGTGAGTGTTTGATTCCTTTCT
TGCCGTTTGCCCTTGGGGGGGGCGGGGGAGCGCGCCAGGAGGCGAAAGGA
AAAAAAGATAAAGGGCCGGCGAGAAACCCGGGGTAGAGATGAGCCCGTGA
ACCCGCTACTGAAAAGCTAGAGCTCGCATGAAGCCTTCTTTGGGCTTGCA
GTGGAAAACCTGACCAGTAGGTTGTAAGAACCACGTTCTACTTCCGACTC
GGTAGCATTTGCACGCATGCAGCTCTCGCTTCTCTTTAGAGCAGGGAAGC
CGGCTCGTTTGTTATTATTGCACCGACCGAGCGTCGTTTCGGCGTGTAGA
CTTCCATGCATACATGGATGGTCCATTGTAGAGCAAAGTGCGGCAGCAAG
GCTAGCTCTCGCCGGTCGTGGCTCGCAGCGGCTGACCCCCCTCACCCTTT
CTTGTTGTCTCCGTCCCACTCTCGTGCTGTGCTGTGCTGTGCTGTACAGA
GCACGTGAGGGATTTTCGACCTTGCCATCGGTCGTGGGCAAGACCAAGCA
AAAGACCAAGTAAGCCACGCCGTTCGTCCCGGCCACGCCCCCGATCACAG
CGAACAACCAAGAATACACCACGTCAACACGGCAAGGACGACAAGAAGGC
AGCAAAGAGAAAATCTGTCTGGTTGTCTGTTGGCATGGCTTTCTTTCTGG
TTTGTCTGTCTGTCTGACTGTAGTGTCTGTCCGCCTGTCTGTGCGGTTGT
CTGTCTTGCTGGTTGTCTGTTTTGTCTGGTTCTCTGTCTGTCTGTCTGTC
CACTGTCCGTCTGTGTGTTTGTCTCCCTTTCTCCTTCTCCCGTTCTCCCC
CTCCCTTATGTTTGTTTGGTTGTGCTGATGTTCCCCCTCTTGCATCAACC
CGCACGCTCCCGCAAGAATGCCACATGTCTCTCGATCGGCTCGATTTCTG
CATGACCCCCGTGTTTCATTCTCACGAGCAAGACAACACCCCCTGCACAC
CGTGCTCGTGGGTCCATTAATTTCGCCCCCGACGCCCCCCCCCGCGCGCC
GTGCACACGTGTCTTCTGCATTTCCCTCACGGCCTTCCCACACTCCGATG
CCCAACGTCCCCTTCACGCCCGCCCGAACTTGACGACTTGTTCGTGGACG
ACGTGGGCGGCACCTCAACCTCCATCGAGGCGCCGGCGGCGTCGCGGCGG
GCGCGGGCAGGAACGGGGGCTTCGCAAGGGGAGCGGCGAGGGCGTAGGGC
GGGGCGGCGGTTGGCGAGAGGGCGGCTCTGGTGGCCAACACGAACCCGGG
GTACCACGACCACATGCCGCAGGTCACGCCACGACGGCGCGGGAGCGAGG
CTTTCGGGCAGGGGAGTGGGGGTAAATATCGTGAGTAGGAAGCAGCGGTG
AGTTCTGTGGCAGCCCAGCTCGTGCGTCCTCCGCCGGCGCCCCGTATAAC
AAAACATGTGGCGCATGTTGAAGATACGTGCAACAAATTTTGTTTCGTGT
GCTCCCGGTTGGTTGTGGTGTACAGGGGTTAGTGGGCTGGGTTTGATTTC
GAGTATGTACGAGTGCGGGAGCCGGCAAATGTTATTCGCTTGGGGAGCCA
GAAATAGTGCGCACTCTCGCGCTTCCCTGGCGGGCCCGTTGTATAATTCC
GTCGCTGTGTTACCTCAAATCCTTTTTCTCTCCCCCGCAGGCCTGGTGGT
AGCCAGCGCGCCTTGCTCCCTAGTGATGCTGCCGTTATACTGCTTTTGTT
CCTCCCTCACGGTGCTCGACACGCGTTTTGGGCGGCCAACTGGCACGCGA
AAAACGGTGTTGTGTTTTGTGTTTGTTTTTCCTTTACTCGATGCAAGCTT
CGAAGCTTTTTTGTTGTGTACTTTAGAGAATGAAGGGGCGCGAAGAGTGG
GCAGCTGGGGTTTGATAGAGTAGACAACGGCGAAGTGCGTTGAAAACCGT
GAGAGGCTGATTGGTGGTGCCTGATTTTTCGTTCGGCTTTGGGTGCGAGA
TTTGTTCGATTGACTGCTGGGTCCGTACGACCCCTGGCTGCGGCGATAGC
CGGCTCGACGACTCGGCCCACCGGCGATGGGAGTGGACTACATACTGCCG
TAGATGGGTTGGGTGGAGCGCCGATCTCGTTGTTGGCGGCGTTTGTCTGG
CAAGGGTTCTTGCAGGACATTGCCGGAGGTTTTGCAGAGAGAAACCTGTG
TTCGATATGATGGTGGTAGGGCGCACATGAGTCGACCCCTCTTCTGCAGT
ATAATCGGGTGCGATCGTTTGAGCTCAGATACCTCGACAAAGATGCCACC
ATCAGCAATGCGGATCTTTTTTTGTTGTTGTTTGCTCCGG
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protein sequence of EsuBft919_7a-0001

>EsuBft919_7 ID=EsuBft919_7|Name=EsuBft919_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MSIEMETDLGKQDGSLRTYLLARSYDSECLIPFLPFALGGGGGARQEAKG
KKDKGPARNPG
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mRNA from alignment at Scaffold_11:167458..169847-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft919_7a-0001 ID=EsuBft919_7a-0001|Name=EsuBft919_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2390bp|location=Sequence derived from alignment at Scaffold_11:167458..169847- (Ectocarpus subulatus male Bft15b)
ATGTCGATCGAGATGGAGACGGATCTCGGCAAACAAGACGGCTCTCTGCG
AACGTACTTGCTCGCACGCAGCTACGATAGTGAGTGTTTGATTCCTTTCT
TGCCGTTTGCCCTTGGGGGGGGCGGGGGAGCGCGCCAGGAGGCGAAAGGA
AAAAAAGATAAAGGGCCGGCGAGAAACCCGGGGTAGAGATGAGCCCGTGA
ACCCGCTACTGAAAAGCTAGAGCTCGCATGAAGCCTTCTTTGGGCTTGCA
GTGGAAAACCTGACCAGTAGGTTGTAAGAACCACGTTCTACTTCCGACTC
GGTAGCATTTGCACGCATGCAGCTCTCGCTTCTCTTTAGAGCAGGGAAGC
CGGCTCGTTTGTTATTATTGCACCGACCGAGCGTCGTTTCGGCGTGTAGA
CTTCCATGCATACATGGATGGTCCATTGTAGAGCAAAGTGCGGCAGCAAG
GCTAGCTCTCGCCGGTCGTGGCTCGCAGCGGCTGACCCCCCTCACCCTTT
CTTGTTGTCTCCGTCCCACTCTCGTGCTGTGCTGTGCTGTGCTGTACAGA
GCACGTGAGGGATTTTCGACCTTGCCATCGGTCGTGGGCAAGACCAAGCA
AAAGACCAAGTAAGCCACGCCGTTCGTCCCGGCCACGCCCCCGATCACAG
CGAACAACCAAGAATACACCACGTCAACACGGCAAGGACGACAAGAAGGC
AGCAAAGAGAAAATCTGTCTGGTTGTCTGTTGGCATGGCTTTCTTTCTGG
TTTGTCTGTCTGTCTGACTGTAGTGTCTGTCCGCCTGTCTGTGCGGTTGT
CTGTCTTGCTGGTTGTCTGTTTTGTCTGGTTCTCTGTCTGTCTGTCTGTC
CACTGTCCGTCTGTGTGTTTGTCTCCCTTTCTCCTTCTCCCGTTCTCCCC
CTCCCTTATGTTTGTTTGGTTGTGCTGATGTTCCCCCTCTTGCATCAACC
CGCACGCTCCCGCAAGAATGCCACATGTCTCTCGATCGGCTCGATTTCTG
CATGACCCCCGTGTTTCATTCTCACGAGCAAGACAACACCCCCTGCACAC
CGTGCTCGTGGGTCCATTAATTTCGCCCCCGACGCCCCCCCCCGCGCGCC
GTGCACACGTGTCTTCTGCATTTCCCTCACGGCCTTCCCACACTCCGATG
CCCAACGTCCCCTTCACGCCCGCCCGAACTTGACGACTTGTTCGTGGACG
ACGTGGGCGGCACCTCAACCTCCATCGAGGCGCCGGCGGCGTCGCGGCGG
GCGCGGGCAGGAACGGGGGCTTCGCAAGGGGAGCGGCGAGGGCGTAGGGC
GGGGCGGCGGTTGGCGAGAGGGCGGCTCTGGTGGCCAACACGAACCCGGG
GTACCACGACCACATGCCGCAGGTCACGCCACGACGGCGCGGGAGCGAGG
CTTTCGGGCAGGGGAGTGGGGGTAAATATCGTGAGTAGGAAGCAGCGGTG
AGTTCTGTGGCAGCCCAGCTCGTGCGTCCTCCGCCGGCGCCCCGTATAAC
AAAACATGTGGCGCATGTTGAAGATACGTGCAACAAATTTTGTTTCGTGT
GCTCCCGGTTGGTTGTGGTGTACAGGGGTTAGTGGGCTGGGTTTGATTTC
GAGTATGTACGAGTGCGGGAGCCGGCAAATGTTATTCGCTTGGGGAGCCA
GAAATAGTGCGCACTCTCGCGCTTCCCTGGCGGGCCCGTTGTATAATTCC
GTCGCTGTGTTACCTCAAATCCTTTTTCTCTCCCCCGCAGGCCTGGTGGT
AGCCAGCGCGCCTTGCTCCCTAGTGATGCTGCCGTTATACTGCTTTTGTT
CCTCCCTCACGGTGCTCGACACGCGTTTTGGGCGGCCAACTGGCACGCGA
AAAACGGTGTTGTGTTTTGTGTTTGTTTTTCCTTTACTCGATGCAAGCTT
CGAAGCTTTTTTGTTGTGTACTTTAGAGAATGAAGGGGCGCGAAGAGTGG
GCAGCTGGGGTTTGATAGAGTAGACAACGGCGAAGTGCGTTGAAAACCGT
GAGAGGCTGATTGGTGGTGCCTGATTTTTCGTTCGGCTTTGGGTGCGAGA
TTTGTTCGATTGACTGCTGGGTCCGTACGACCCCTGGCTGCGGCGATAGC
CGGCTCGACGACTCGGCCCACCGGCGATGGGAGTGGACTACATACTGCCG
TAGATGGGTTGGGTGGAGCGCCGATCTCGTTGTTGGCGGCGTTTGTCTGG
CAAGGGTTCTTGCAGGACATTGCCGGAGGTTTTGCAGAGAGAAACCTGTG
TTCGATATGATGGTGGTAGGGCGCACATGAGTCGACCCCTCTTCTGCAGT
ATAATCGGGTGCGATCGTTTGAGCTCAGATACCTCGACAAAGATGCCACC
ATCAGCAATGCGGATCTTTTTTTGTTGTTGTTTGCTCCGG
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Coding sequence (CDS) from alignment at Scaffold_11:167458..169847-

>EsuBft919_7a-0001 ID=EsuBft919_7a-0001|Name=EsuBft919_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_11:167458..169847- (Ectocarpus subulatus male Bft15b)
ATGTCGATCGAGATGGAGACGGATCTCGGCAAACAAGACGGCTCTCTGCG
AACGTACTTGCTCGCACGCAGCTACGATAGTGAGTGTTTGATTCCTTTCT
TGCCGTTTGCCCTTGGGGGGGGCGGGGGAGCGCGCCAGGAGGCGAAAGGA
AAAAAAGATAAAGGGCCGGCGAGAAACCCGGGGTAG
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