EsuBft919_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft919_6a-0001
Unique NameEsuBft919_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_11contigScaffold_11:179325..179669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft919_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length34
Hectar predicted targeting categoryother localisation
Evalue1.93e-22
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft919_6aEsuBft919_6aEctocarpus subulatus male Bft15bgeneScaffold_11 179325..179669 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft919_6a-0001-exonEsuBft919_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_11 179325..179669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft919_6a-0001-cdsEsuBft919_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_11 179325..179669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft919_6a-0001EsuBft919_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_11 179325..179669 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft919_6a-0001 ID=EsuBft919_6a-0001|Name=EsuBft919_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=345bp|location=Sequence derived from alignment at Scaffold_11:179325..179669+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCCCGGACAGGTTTCGACTCCAGGCGTCTCCACCACCGGCCCT
CAATCAGTCAATAGTGAAGCGTGGGAGCCTCGTGCAACTCGGGTTGGGTT
GGTTCGGAGGGGTAATTAGTCGCAGATCTCACCCCGGTTCGCGGCAGGAG
AACGACTACCGCGTCATCCTGCACTGTACCGAAAGCACGCGTAGCATGAA
GATGCCGTTGGAGTCGTACAGCACGGATGAAGACGCCGCAATTGGGGCGT
GGGTTCTCCTAGAGGTAGACCCAAAGGAAAGGAGCGGGAGGCGCAGAAGG
GTGACAACCCCCAATGTTCGCCTCACGGGGCTTGCAACACAATGA
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protein sequence of EsuBft919_6a-0001

>EsuBft919_6 ID=EsuBft919_6|Name=EsuBft919_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=114bp
MDIPDRFRLQASPPPALNQSIVKRGSLVQLGLGWFGGVISRRSHPGSRQE
NDYRVILHCTESTRSMKMPLESYSTDEDAAIGAWVLLEVDPKERSGRRRR
VTTPNVRLTGLATQ
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mRNA from alignment at Scaffold_11:179325..179669+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft919_6a-0001 ID=EsuBft919_6a-0001|Name=EsuBft919_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=345bp|location=Sequence derived from alignment at Scaffold_11:179325..179669+ (Ectocarpus subulatus male Bft15b)
ATGGACATCCCGGACAGGTTTCGACTCCAGGCGTCTCCACCACCGGCCCT
CAATCAGTCAATAGTGAAGCGTGGGAGCCTCGTGCAACTCGGGTTGGGTT
GGTTCGGAGGGGTAATTAGTCGCAGATCTCACCCCGGTTCGCGGCAGGAG
AACGACTACCGCGTCATCCTGCACTGTACCGAAAGCACGCGTAGCATGAA
GATGCCGTTGGAGTCGTACAGCACGGATGAAGACGCCGCAATTGGGGCGT
GGGTTCTCCTAGAGGTAGACCCAAAGGAAAGGAGCGGGAGGCGCAGAAGG
GTGACAACCCCCAATGTTCGCCTCACGGGGCTTGCAACACAATGA
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Coding sequence (CDS) from alignment at Scaffold_11:179325..179669+

>EsuBft919_6a-0001 ID=EsuBft919_6a-0001|Name=EsuBft919_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=345bp|location=Sequence derived from alignment at Scaffold_11:179325..179669+ (Ectocarpus subulatus male Bft15b)
ATGGACATCCCGGACAGGTTTCGACTCCAGGCGTCTCCACCACCGGCCCT
CAATCAGTCAATAGTGAAGCGTGGGAGCCTCGTGCAACTCGGGTTGGGTT
GGTTCGGAGGGGTAATTAGTCGCAGATCTCACCCCGGTTCGCGGCAGGAG
AACGACTACCGCGTCATCCTGCACTGTACCGAAAGCACGCGTAGCATGAA
GATGCCGTTGGAGTCGTACAGCACGGATGAAGACGCCGCAATTGGGGCGT
GGGTTCTCCTAGAGGTAGACCCAAAGGAAAGGAGCGGGAGGCGCAGAAGG
GTGACAACCCCCAATGTTCGCCTCACGGGGCTTGCAACACAATGA
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