EsuBft917_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft917_9a-0001
Unique Name	EsuBft917_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D7G3K0
ProteomeId	EsuBft917_9
Protein domains	IPR019265
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	93
Hectar predicted targeting category	other localisation
Evalue	1.8e-141
EggNOG OGs	KOG4380@1\|root,KOG4380@2759\|Eukaryota
Ec32 ortholog description	Protein of unknown function UPF0568
Ec32 ortholog	Ec-19_004940.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	C14orf166
KEGG rclass	RC00002
KEGG ko	ko:K15433,ko:K18532
KEGG Reaction	R00127,R01547
KEGG Pathway	ko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008
KEGG Module	M00049
GOs	GO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EC	2.7.4.3
Description	RNA polymerase II complex binding
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03036

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:161373..163239-
coding sequence from alignment at Scaffold_70:161373..163239-

spliced messenger RNA

>EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=930bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGTGTGCTTGGATCACCTAGCTTTTAAGAATGGCATGCGAAGCACGTAT
CATTCGCGCGTTGCGCACGATGGAGTACCCGGGGTTGGATCACATCTCAG
GATCGGCAGCAACAGGTCGGAGTTTGGTCGCGCAGCCTCATGAGCTCGCC
AAGATCGTCGGTTGGATAGAGGACAGAAAGATCCGAGGCCTCACCATCTC
CGACCGTGAGCCCCTGCGCACCCCCGGGCCAAAATGGGAAGAGGCGTTTT
TTAGCTACTTGCAGGAGATGGGCTGCCCCAACGATTTCAAGGCAACCGGG
GGAGGCGGAGGAGAACCAAGTGGTGCCGCCGTCCTGCGTGGAGTATCGTG
GTTGGTTACCGAGGCCGTGGCCTATGATTTCGAGGACAACGGGAAGGAAT
ACAAGGCTGCTGCTAGAGAGTTGTTGTTGGCGAAAACGCGGTTTTCTCCA
CAAGCCATGGGAGGGGCAAGAGGGGGCAGCAGCAGCGACCCTAGCTCGGT
GCAGCCAGAACCGGCGCAGCAAACCATCAGTACTGCCGGCGATGCCATGG
ACATTGGTTCTGGAGAAGAACACCGAACATTTCGAGAGCAGCTCAGGGGG
TTCACGGCTGGGGTAGAAACTGGGGACGAGGCTTGCGACAGCGTGGCGAC
GGTGCTTCGGATGCTCTACTTGTCGGACTTGAGGAGCCTGCAGAACGAGG
TCAACGGTGTCATAGACTTGGCGCAATCCACTAGACGAGAACAGAAAACA
GCAGTGTGACGACAACGAATGTTGCTGTTGATAACGAAACCCTCCTCCGT
AGAAGGGTGCTTTGAACGTGGGGTGTGACGAGAGGTAGTCATTTTGGGTT
TGGTCTTCGATCTGCCGCAACGTGGACACCAGTTGTTGGCGCTTGTCCGA
GTGAAGAGAGTCGTGCAAGTATTTGAATCC

protein sequence of EsuBft917_9a-0001

>EsuBft917_9 ID=EsuBft917_9|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=242bp
MACEARIIRALRTMEYPGLDHISGSAATGRSLVAQPHELAKIVGWIEDRK
IRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDFKATGGGGGEPSGAA
VLRGVSWLVTEAVAYDFEDNGKEYKAAARELLLAKTRFSPQAMGGARGGS
SSDPSSVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDE
ACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQKTAV

mRNA from alignment at Scaffold_70:161373..163239-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1867bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)
GCGTGTGCTTGGATCACCTAGCTTTTAAGAATGGCATGCGAAGCACGTAT
CATTCGCGCGTTGCGCACGATGGAGTACCCGGGGTTGGATCACATCTCAG
GATCGGCAGCAACAGGTCGGAGTTTGGTCGCGCAGCCTCATGAGCTCGCC
AAGATCGTCGGTTGGATAGAGGACAGAAAGGTGTGTGCGGCGGGCTTTGG
AACGGAGAAGGAAGAAGGACTGGAGGATCTACCTGTTGCTGGTATTTTGC
ACCAGAGCTTCCTCGCGTAGGTAGCCATTCACGTTCAAGGTCGGGTAACG
GATGACCAGAGGTTATTTTTGTCATTGCCCATACACCCCTTCGCGCAGGG
GCGTGCACTACTTACTGCCCTGTACAACGTCTTGACAGCTGCTGATTATA
TTGCTATCGAACACCATTCGTATGGGGTTGGTGTACATTATAAGAGCACC
ACACCAAATAAATGGGACATTCACGAACGAAGAGAGAAAATGTTATAACC
CCGGCTGTGTGACCGAGCCATGGTTGCTTCTGTCGCCCCGCGATGGCCTA
CACCATCTATCCGAGATAAACTCTCCGCATAAATATAGGAGGCGGCCGCG
TGTGCCTGCACCACGATATCCCCTCCCCCGCCCCCTTTGCTCGGGCTGTT
ACATCTGTTGATGTGTGTGGTATTGTTTAGATCCGAGGCCTCACCATCTC
CGACCGTGAGCCCCTGCGCACCCCCGGGCCAAAATGGGAAGAGGCGTTTT
TTAGCTACTTGCAGGAGATGGGCTGCCCCAACGATTTCAAGGCAACCGGG
GGAGGCGGAGGAGAACCAAGTGGTGCCGCCGTCCTGCGTGGAGTATCGTG
GTTGGTTACCGAGGCCGTGGCCTATGATTTCGAGGACAACGGGAAGGAAT
ACAAGGCTGCTGCTAGAGAGGTACGAGCGTTCCTTTGCGATAGATCTTTG
CTTCGGTCTGCAACAGGCGGCGATTGGTGTCAACAGATCAGTGAATAAAT
TCAATACACGGCTGTTCGCAACATGTTGCCCTTCGTGTCGATGTGTACAT
TCGTGGTGTGGAATGGCAACTCACGAAAGCCGTGGCGTGGCTTCGAAAGG
GGGCGTATCACGGCACATGTACCACGCATGTACAGGTTAGGTTACTGCTA
GTTCTTGTTTTGACCAAGTTCCAGAAAATTGTCTACCGACCTGTGTGTGG
AGATATTTTTTTCTATGCCACAATGCCAATCTATTCTCCCTGAGACTTGT
TATCGCCCTCTTTACTGATCATCAATCAATCTCACTCTCCCCCGTTATCC
TCACCGACACACGACGGTTACATGTAAAATCTCCTCTACAAACACCAAAT
TCTGCAGTTGTTGTTGGCGAAAACGCGGTTTTCTCCACAAGCCATGGGAG
GGGCAAGAGGGGGCAGCAGCAGCGACCCTAGCTCGGTGCAGCCAGAACCG
GCGCAGCAAACCATCAGTACTGCCGGCGATGCCATGGACATTGGTTCTGG
AGAAGAACACCGAACATTTCGAGAGCAGCTCAGGGGGTTCACGGCTGGGG
TAGAAACTGGGGACGAGGCTTGCGACAGCGTGGCGACGGTGCTTCGGATG
CTCTACTTGTCGGACTTGAGGAGCCTGCAGAACGAGGTCAACGGTGTCAT
AGACTTGGCGCAATCCACTAGACGAGAACAGAAAACAGCAGTGTGACGAC
AACGAATGTTGCTGTTGATAACGAAACCCTCCTCCGTAGAAGGGTGCTTT
GAACGTGGGGTGTGACGAGAGGTAGTCATTTTGGGTTTGGTCTTCGATCT
GCCGCAACGTGGACACCAGTTGTTGGCGCTTGTCCGAGTGAAGAGAGTCG
TGCAAGTATTTGAATCC

Coding sequence (CDS) from alignment at Scaffold_70:161373..163239-

>EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=729bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)
ATGGCATGCGAAGCACGTATCATTCGCGCGTTGCGCACGATGGAGTACCC
GGGGTTGGATCACATCTCAGGATCGGCAGCAACAGGTCGGAGTTTGGTCG
CGCAGCCTCATGAGCTCGCCAAGATCGTCGGTTGGATAGAGGACAGAAAG
ATCCGAGGCCTCACCATCTCCGACCGTGAGCCCCTGCGCACCCCCGGGCC
AAAATGGGAAGAGGCGTTTTTTAGCTACTTGCAGGAGATGGGCTGCCCCA
ACGATTTCAAGGCAACCGGGGGAGGCGGAGGAGAACCAAGTGGTGCCGCC
GTCCTGCGTGGAGTATCGTGGTTGGTTACCGAGGCCGTGGCCTATGATTT
CGAGGACAACGGGAAGGAATACAAGGCTGCTGCTAGAGAGTTGTTGTTGG
CGAAAACGCGGTTTTCTCCACAAGCCATGGGAGGGGCAAGAGGGGGCAGC
AGCAGCGACCCTAGCTCGGTGCAGCCAGAACCGGCGCAGCAAACCATCAG
TACTGCCGGCGATGCCATGGACATTGGTTCTGGAGAAGAACACCGAACAT
TTCGAGAGCAGCTCAGGGGGTTCACGGCTGGGGTAGAAACTGGGGACGAG
GCTTGCGACAGCGTGGCGACGGTGCTTCGGATGCTCTACTTGTCGGACTT
GAGGAGCCTGCAGAACGAGGTCAACGGTGTCATAGACTTGGCGCAATCCA
CTAGACGAGAACAGAAAACAGCAGTGTGA