EsuBft917_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft917_7a-0001
Unique Name	EsuBft917_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:137139..139913 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft917_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	204
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft917_7a	EsuBft917_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 137139..139913 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_7a-0001	EsuBft917_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 138734..139128 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_7a-0001-exon	agat-exon-21926	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 137139..138773 -
EsuBft917_7a-0001-exon	agat-exon-21927	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 139079..139163 -
EsuBft917_7a-0001-exon	EsuBft917_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 139586..139913 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_7a-0001-exon	agat-three_prime_utr-23024	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_70 137139..138733 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_7a-0001-cds	EsuBft917_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 138734..138773 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_7a-0001-exon	agat-five_prime_utr-14967	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_70 139129..139163 -
EsuBft917_7a-0001-exon	agat-five_prime_utr-14968	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_70 139586..139913 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:137139..139913-
coding sequence from alignment at Scaffold_70:137139..139913-

spliced messenger RNA

>EsuBft917_7a-0001 ID=EsuBft917_7a-0001|Name=EsuBft917_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2048bp|location=Sequence derived from alignment at Scaffold_70:137139..139913- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGGAGAGCAGGCGAGCACGAATTGTAGCCTGTATCGTTTTTGTCAAGGT
ACGGCAGTGAAGACGAACTACAGGCGCGAAGAAGTCCAGTATCCCGCTTG
TCTCCGCCAAACCCTCGTTGTAAAGATATCAACACAACCGCTCGAAGTAT
ACTCGTCTTGAACTGGTACTTGATCTGTTGAACTACTGCTGTAGCAAACA
TTTGGCTACGTGCTGGAATTTTGCCTAAAACGTTTGTTTCTTGTGTGGTT
ATTTCCCGTGATCTCGTGCCTGCTCTACGACTCCCTCTTGCCACTTCCGT
GCCAACCGGCCGGACACGCGCTTGGCAGATGAAGGCACTGGATAGAGAGA
TCGGAACGGTATTATGTGTGAAGGCTACAACAACAGAGACATGAAGGTAG
CAGATGACAAATGCATCGACCGCGCTAACCGGCCGAACAATGAAAAGACG
TAGATATTGCGTGATTTCGCCCCATCTTTGCCAACACACACAAATAGAAA
TGTCGACTTATTCCCGCTTGCCCAAATGTCGACTACACTCTTCCCGAACA
GACTGGTAGCAGCGTCGTGTGGATAGAGAGGGGGAGGGGTTCCCTACATA
CATACGTTGGCTTCATGTGTTTTTATTTTGTGAGTGAATGTTGATGTGGA
GTGAACGAGAATGACGAGGAGGGTGCACAACTACAGTACTGTAGTGTAGT
ATAGTTGGCGCCCGTAGTTAAGAAATATTTTGTTAAGAAATTGAGGCTCG
CTTATTCACCAAAAATAAGAAAATAGGGTTAAAAAACATAGCTTAATCTG
GGTCACACAAGAAATGTCTCAAAAAGATAGGAAGGGAGCGGGGGGCGCAA
AAGGGTAACAACCCCCAATGTTCGCCTCACGGAGCTTGCATCATAATGAC
GGGGTAGTTTTCGTTGTTGGGCACGTCAGCGTGCGGGTGAGACATCATGC
GGTGTTGATGCATTTGTTTAGTTTCAGCCCTCACTCATGAGGGGGGTACA
GGACCTTGTAGCGATAGCGAGACGTTGCCGCTGGATACATTTCGCTTCTA
GGGAGTGGCCTTACGTGCAGCCGTCGGTAGTGAGAATCGGGGTTGAGTAC
GGGGGTCGAGGAAAGCAGTGCAAATCATTTGTATATTTGGAACGTTGTGT
AGTATGCAAGCAGATAAATAAAAAGAAATTGCCGATTTAAGAAACTCAGC
AGGATTTGGCTGCACGAAAAAATAAAAACTTGAAATAAGAAACGGAACGA
CATACGCTGAGTTTATAGCCCACAAGAAGAATTCGAGGCTGGACCTGAAG
TACGCGTTTCTTAACTGCGGGCGCCACCTGTTGTAGAGACAATGTTTTGA
GCTGGAAAATGGTAATAAAGCAGATAACCAACGTTTTGCGTGCGTAGTGG
AGATTCCAAAGAGATACATGCGTCTTCGGGTGTTGGATTGTACGACATGG
AGGGTCGCGTGTATATTACGATAGTTGCCCTGCATACCAACACACGCTAG
CTTTGAACGCATTAACAGGGGGGGGTACTCTTTCCTCCTTTGCTTGGTTG
CTGGGAACGAGCTCATTCGCGCAGAATAGGATGCACGGAGATGATGTTAC
AGATGACGCCCGTACTTAAGAACCTCTTGTTTCGGCCGAGGGTGGGGCTC
TTATTTTGCTGATCATCCCCTTATGGGCTACAAATGGCCGCTATATGGGT
TTTAGTGTGGGGTTCTTAACCGAGCTCACAAATAGTGCTCAAGTTCTTAG
CTTCTGATTTTTTACGAGTCTCGATTTCTTGACTGCTAAGTTCTCAAGTG
CGGGCGCTATCTGTAGTTAGTTGCATACGTACGTGTAGAGGAGAGAATAA
CATCGTTCATTGTAAAATGCAAGCTATTGCAACTGTTTCATTCGAAGAAG
TTTGTATTCACTGTTCTTAGAATTGCGAAGTGGAGATGTTTCGGCAGGAT
GTTTCCTTGGGAGTTTCTGGTCGTTGTCCCTCATTCGTCATGTCGGGTGT
GTAGATATTTCTCTACGTTGGCTCGCGACATTTTCTAGCGATTCGGGC

protein sequence of EsuBft917_7a-0001

>EsuBft917_7 ID=EsuBft917_7|Name=EsuBft917_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=29bp
MCEGYNNRDMKVADDKCIDRANRPNNEKT

mRNA from alignment at Scaffold_70:137139..139913-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft917_7a-0001 ID=EsuBft917_7a-0001|Name=EsuBft917_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2775bp|location=Sequence derived from alignment at Scaffold_70:137139..139913- (Ectocarpus subulatus male Bft15b)
CCGGAGAGCAGGCGAGCACGAATTGTAGCCTGTATCGTTTTTGTCAAGGT
ACGGCAGTGAAGACGAACTACAGGCGCGAAGAAGTCCAGTATCCCGCTTG
TCTCCGCCAAACCCTCGTTGTAAAGATATCAACACAACCGCTCGAAGTAT
ACTCGTCTTGAACTGGTACTTGATCTGTTGAACTACTGCTGTAGCAAACA
TTTGGCTACGTGCTGGAATTTTGCCTAAAACGTTTGTTTCTTGTGTGGTT
ATTTCCCGTGATCTCGTGCCTGCTCTACGACTCCCTCTTGCCACTTCCGT
GCCAACCGGCCGGACACGCGCTTGGCAGGTGCTAGACTCGCTCAGCCACG
GTGGGACAAACTTCAATGACGTGAGCGTCGCGGTGTGGTGCTGCGCGCTG
GTGGGGTTGTCCCTTGTGTGGAGGGTGGTCCACTTCGTCGCCCTCGAGCG
TTCCATTTTTTGAAGTCTGTCGACCGCATTTCAGTGCGCCCTTGCGGGTG
TGTGGTGCGTGTTTGTTTTGAAGCAGCCTCGACCGTGCTCATCCGCTGAT
TTCTGCAAGACGTCAGCTCAGTCTCAGTGCGGCTGAAAACGGAAATGGGC
TTCTGAGCCCAATGATCCGTGAGAACGTCATGGGGAAGGCTATTTTGTTC
TCCAAATCGTTTAATTTGAGAACATTTATTTGGTAAAATAGCCTGTGACC
ACGGGTCCCGGAGGGGATCCACCGGTCAAGTGTTTGACCGGCACGGACAG
ATGAAGGCACTGGATAGAGAGATCGGAACGGTATTATGTGTGAAGGCTAC
AACAACAGAGACATGAAGGTAGCAGATGACAAATGGTATGTATCTTTCAA
GCCTGATTTTGTGCTCGTGTTTTCCGCTTGCTGCATGTTCGGAGTTAGCA
CGGACTGCGCTAACCAGCTGACCCACTAGAAGACCTCAGTCTCAGTGCGG
CTGGAAACGGAAAGCGCTTCTAAAGGCCATGATCTGGGACCCCGTGAGGG
GGCGGCATGAGGGGAACCAATACTGCTATCCGGAACGAAGACAGATAGGC
AGGAAACAAAGAAAAATTACACGTGACGTGCCCATGTACCGAGGCTGTTC
TTTGCACTCGTGGTTCGTGTCTCTGTGTGTTTCGAATTAGCATCGACCGC
GCTAACCGGCCGAACAATGAAAAGACGTAGATATTGCGTGATTTCGCCCC
ATCTTTGCCAACACACACAAATAGAAATGTCGACTTATTCCCGCTTGCCC
AAATGTCGACTACACTCTTCCCGAACAGACTGGTAGCAGCGTCGTGTGGA
TAGAGAGGGGGAGGGGTTCCCTACATACATACGTTGGCTTCATGTGTTTT
TATTTTGTGAGTGAATGTTGATGTGGAGTGAACGAGAATGACGAGGAGGG
TGCACAACTACAGTACTGTAGTGTAGTATAGTTGGCGCCCGTAGTTAAGA
AATATTTTGTTAAGAAATTGAGGCTCGCTTATTCACCAAAAATAAGAAAA
TAGGGTTAAAAAACATAGCTTAATCTGGGTCACACAAGAAATGTCTCAAA
AAGATAGGAAGGGAGCGGGGGGCGCAAAAGGGTAACAACCCCCAATGTTC
GCCTCACGGAGCTTGCATCATAATGACGGGGTAGTTTTCGTTGTTGGGCA
CGTCAGCGTGCGGGTGAGACATCATGCGGTGTTGATGCATTTGTTTAGTT
TCAGCCCTCACTCATGAGGGGGGTACAGGACCTTGTAGCGATAGCGAGAC
GTTGCCGCTGGATACATTTCGCTTCTAGGGAGTGGCCTTACGTGCAGCCG
TCGGTAGTGAGAATCGGGGTTGAGTACGGGGGTCGAGGAAAGCAGTGCAA
ATCATTTGTATATTTGGAACGTTGTGTAGTATGCAAGCAGATAAATAAAA
AGAAATTGCCGATTTAAGAAACTCAGCAGGATTTGGCTGCACGAAAAAAT
AAAAACTTGAAATAAGAAACGGAACGACATACGCTGAGTTTATAGCCCAC
AAGAAGAATTCGAGGCTGGACCTGAAGTACGCGTTTCTTAACTGCGGGCG
CCACCTGTTGTAGAGACAATGTTTTGAGCTGGAAAATGGTAATAAAGCAG
ATAACCAACGTTTTGCGTGCGTAGTGGAGATTCCAAAGAGATACATGCGT
CTTCGGGTGTTGGATTGTACGACATGGAGGGTCGCGTGTATATTACGATA
GTTGCCCTGCATACCAACACACGCTAGCTTTGAACGCATTAACAGGGGGG
GGTACTCTTTCCTCCTTTGCTTGGTTGCTGGGAACGAGCTCATTCGCGCA
GAATAGGATGCACGGAGATGATGTTACAGATGACGCCCGTACTTAAGAAC
CTCTTGTTTCGGCCGAGGGTGGGGCTCTTATTTTGCTGATCATCCCCTTA
TGGGCTACAAATGGCCGCTATATGGGTTTTAGTGTGGGGTTCTTAACCGA
GCTCACAAATAGTGCTCAAGTTCTTAGCTTCTGATTTTTTACGAGTCTCG
ATTTCTTGACTGCTAAGTTCTCAAGTGCGGGCGCTATCTGTAGTTAGTTG
CATACGTACGTGTAGAGGAGAGAATAACATCGTTCATTGTAAAATGCAAG
CTATTGCAACTGTTTCATTCGAAGAAGTTTGTATTCACTGTTCTTAGAAT
TGCGAAGTGGAGATGTTTCGGCAGGATGTTTCCTTGGGAGTTTCTGGTCG
TTGTCCCTCATTCGTCATGTCGGGTGTGTAGATATTTCTCTACGTTGGCT
CGCGACATTTTCTAGCGATTCGGGC

Coding sequence (CDS) from alignment at Scaffold_70:137139..139913-

>EsuBft917_7a-0001 ID=EsuBft917_7a-0001|Name=EsuBft917_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=90bp|location=Sequence derived from alignment at Scaffold_70:137139..139913- (Ectocarpus subulatus male Bft15b)
ATGTGTGAAGGCTACAACAACAGAGACATGAAGGTAGCAGATGACAAATG
CATCGACCGCGCTAACCGGCCGAACAATGAAAAGACGTAG