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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Symbol | GMD |
| Status | Manually annotated |
| Seed ortholog | 298653.Franean1_6677 |
| ProteomeId | EsuBft917_5 |
| Protein domains | SSF51735 |
| Protein domains | IPR001732 |
| Protein domains | IPR008927 |
| Protein domains | IPR014026 |
| Protein domains | IPR017476 |
| Protein domains | IPR013328 |
| Protein domains | IPR016040 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | udp-glucose 6-dehydrogenase os:rickettsia prowazekii (strain madrid e) gn:udg pe:3 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 201174|Actinobacteria |
| Length | 2573 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.77e-27 |
| EggNOG OGs | COG1004@1|root,COG1004@2|Bacteria,2IF5H@201174|Actinobacteria |
| Ec32 ortholog description | UDP-glucose/GDP-mannose dehydrogenase, N-terminal |
| Ec32 ortholog | Ec-19_004990.1 |
| Date last modified | 2016-09-09 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00291 |
| KEGG ko | ko:K00012 |
| KEGG Reaction | R00286 |
| KEGG Pathway | ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 |
| KEGG Module | M00014,M00129,M00361,M00362 |
| EC | 1.1.1.22 |
| Description | GDP-mannose 6-dehydrogenase |
| Description | UDP-glucose/GDP-mannose dehydrogenase family, central domain |
| COG category | M |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
| Note | GDP-mannose 6-dehydrogenase catalyzes the oxidation of guanosine diphospho-D-mannose (GDP-D-mannose) to GDP-D-mannuronic acid, a precursor for alginate polymerization: GDP-D-mannose 2 NAD( ) H(2)O = GDP-D-mannuronate 2 NADH. |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| PMID | 21454608 |
| GO | 0016616 |
| GO | 0051287 |
| GO | 0055114 |
| EC | 1.1.1.132 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft917_5a-0001 ID=EsuBft917_5a-0001|Name=EsuBft917_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2573bp|location=Sequence derived from alignment at Scaffold_70:117585..122524+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCCCCACACCTTCACATACTTTCTCTCTTCCCTGATTCGTCACCCCTCTC
TCAGTCCCCACCAACTCTCTCACCCTCTCCCAACCATGTCCGGAAACAAG
GAGTCTATCATCCAGGTTGGGTGCGGTGTTGTCGGCGGGGCTTACGCGAA
GGCGTACAAGCACCACGGCTTCGAGGTGCGCGGCTTTGATGTCGTGCCTG
CCATCATCGAGAAGATGAACGAGGCTGGCATCCCCTGCTGCCACCCGGAC
AACTGCCCCGACGACCTTAACCCCGAGATCGTCCTCCTGTCGGTACCCAC
CCCGCTCATTAAGGAGACCCAGCGCCTCGACATGAAGTACGTCTGGTCGA
CCTTGCCCCTTGTGGTGAAGCTCATCGAGCAGTCGACGGGCAGCACCCCG
ATCTTCGTGATCCGATCCACTGTGCCCCCCGGCATGACTAAGAAGTGGAT
GGCGGCCGTCAAGGAGAAGACCGACAAGCCGTTCCACGTGGCCTTCCAGC
CGGAGTTCCTCCGCGCCGTCTCTTGTGAGGAGGACGCACGGGCGCCATGG
CAGGTGGTGTTCGGCTACATGCCCGGAGAGGAGGACGTGAAGGCCCGCAT
GGCCAACGCGTTCCTCGAATTCGTCGGCCGGGACGAGTCCAAGCTCACCG
TGCTGAACATCGCGGAGGCCGAGTTCATGAAGCTCGTGCACAACTACGCG
AACGGGCTCAAGATCTCCTTCGCCAACTGCATCTACGGCCTCGCCAACGA
GCTCGACCCCACGATCGACGCTCAAAAGGTTCTCTACCTGGTGTCCTCCA
CCGCGGAGTGCTTCCTCAGCCGCAAGTACGGCCTCCGCGTGGGGGCGCCG
TACGGCGGCGTGTGCTTGCCCAAGGACGTGCCGGAGCTCACCAGCCTCGC
GCCAGAGGGCTCCGTGTTCAGGGAGTTCCTGTCGGGGACCGGCAAGATCA
ACGAGTGGATCTCGAGCCCTGAGGCCAAGAACATGCGGGTGGAGCTTGAC
GAGAGCCCCAACTGGGTGTCCCCCGACGCCCTCACCACCTAATTGTGATA
ATTGGTTGGGATAGTGTTGGTTCGAGTTGTGTGGGCGTGCTCTCTTTTGA
GCTTGATTTGTAGTGTCGAAGGCGGAGATGGTGGAGCATAAACGCCACTC
CCATTAGTGACTGCCATCACACGTAATCGTTGTCTGTTGTGGTGAGGAAG
CGGAACGTTGTTGTCTGTTGGAGTGGCGGCAGTTAGTGCTGTACCAACAC
CTCTCGGTTGGATTTTTCCCCTTGTAGTCATGAAGGATCGGTTGACCCTC
CTGTTGTGTCGGCGGGCTCTGTATTTTGTTGCGTTCTGAGCTGCCGAACA
GCCGGCTAGATCTGAGCGCTGGACGCGGGCGTCGTTCTCCTGGCGAAAAT
GTGTGGTCTTGTGTGAGAGAAACATTCAATTTCTTCGATTGTCGTTGTAC
TGCTGTATTAGTGTCTTTGTCCTGTCTGTCTCCCTCTACACGTTTTCTGC
ACCTCGAATTGCGCTCTCTGTTCACTCCCGGCTTCGCTTCCATGTGGAAG
GCATTCCGCTTTCTTATTCAGGGTGCGATTTATGAAGAACCGCGATTGAT
GCTGATGGTCGTTCATGGCTTTAATGATTTCCTAGTGTTTTTTTTATGAA
CAAAGGGTATGAAGTGCTTTTAGCAAAGAGAATTAGCTGATCGGTGTTGG
TGAGAGGTAAGAAGATCATCCACCTTTTGATGTGGTTTTATCGTAACTCA
ACTTCTGGTTGGAAGGGTGTGGGATGTGAAAGGGGGCCGTGACGTGACGG
CTTGCGTGGTGTGTCTTTCGTCCGGCCCTTGGGCCCCGTCGTTATCATAG
CAGACGAGATGCGGAAGTCCGCGACGCACAGGCGTCGAGCTTGTCAAAAG
CTTGAACCAAAGCCCGTCATGGCGGCAACCCGTCCTCGTGCGCACGTGAC
ATGGCTCTCACCGTTTGTTGCAAAGGGGTGTCGGCTACATAGTTGTAGCT
CATGGTGTTCTGAGTACTCGGGGTTGACTGTAATATACGCTCGTGTCGAA
AATTTGGTGTCACGAAGGAAAATGAATGTTGAGGGATGGACGCTTTCATA
CCTTGGCACGACGACTGACTGCACACTTCTTGATACCGTCAAGTGAGTCG
TCAGTTTTGCGTAATGGCCACTCTCCGTCGTCGGCAAAAAAAGTGAAAAG
TACTCGTTTCGTCGCGCTTCTTACATCGTGGGCCCGCCCACACGGTCGTG
TGACATGCATACACTGGTGGTTCGTTATCTGGCCTCTCTTTTGTGTGTGC
CTGGTGGCGGCGATGAGAACGGAGACCAACTTCCACGAGTTGGCGTGTTT
CTTCACGACCCAATCGTTCCTGCTGTGTGGGTGAAGGACTCTTTTATTAT
CGGGGAGTGGTCGAGGCCTGGCGAGCCCGAACTTAACATACATTGTACGA
TGCCGTCTCGAACGGGAAAAAAAGCTTTCGACACACCTTCCGACATGCTG
TATGTAGTACGGCTACTAACAATTGAAGTGAGTGCCCAGACTTGAAATGA
AATCAAATTTAGACTTGTCATCT back to topprotein sequence of EsuBft917_5a-0001 >EsuBft917_5 ID=EsuBft917_5|Name=EsuBft917_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=318bp
MSGNKESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNEAGIP
CCHPDNCPDDLNPEIVLLSVPTPLIKETQRLDMKYVWSTLPLVVKLIEQS
TGSTPIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQPEFLRAVSCEED
ARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKL
VHNYANGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGL
RVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINEWISSPEAKNM
RVELDESPNWVSPDALTT back to topmRNA from alignment at Scaffold_70:117585..122524+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft917_5a-0001 ID=EsuBft917_5a-0001|Name=EsuBft917_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4940bp|location=Sequence derived from alignment at Scaffold_70:117585..122524+ (Ectocarpus subulatus male Bft15b)
GCCCCACACCTTCACATACTTTCTCTCTTCCCTGATTCGTCACCCCTCTC
TCAGTCCCCACCAACTCTCTCACCCTCTCCCAACCATGTCCGGAAACAAG
GAGTCTATCATCCAGGTTGGGTGCGGTGTTGTCGGCGGGGCTTACGCGAA
GGCGTACAAGCACCACGGCTTCGAGGTGCGCGGCTTTGATGTCGTGCCTG
CCATCATCGAGAAGATGAACGAGGCTGGCATCCCCTGCTGCCACCCGGAC
AACTGCCCCGACGACCTTAACCCCGAGATCGTCCTCCTGTCGGTACCCAC
CCCGCTCATTAAGGAGACCCAGCGCCTCGACATGAAGTACGTCTGGTCGA
CCTTGCCCCTTGTGGTGAAGCTCATCGAGCAGTCGACGGGCAGCACCCCG
ATCTTCGTGATCCGATCCACGTGAGTTCTCCAATGGAATTTGTTCTTTTT
TTGCAAGGGCGGCGCTTGTCCCAAGGGCCGTCGATAGAGGTTAGCGCCCT
GCTTTTTGCCACGGAGCAAAGACTACAGATAGCTTGACGCGCTGGTAGCA
AGTGCAAGAGGTCGCTGTTGCTTCGCGTCGTATCGCTTCGCGCAGGAGGC
TGACCCTGTGGGGCGGAATCCTGGCCTACGTAAGTGTATTTTTTCCCTTT
GTTCCACCTCCTGCTGTCGACGCTTCCGGATGTGTCTTTTGTTCTGAATA
ATCATCACCAAAAGCGGCAGCTCGTGCCATCCAATGTCCAGCCCTGCCCT
TCAAGGCAACGTGCACGTCTGCAGCAATGCGATGTCCACGATCCAGTCGG
GAGCACTGCTGTCCATGCCGCGCGCACGTCGGAAGCAGACACGACTCTTT
CTTTTTGCTGCACGGGAAACGTTTCCGAATCGAAATGAATCTACCGCCCT
TGGTTTTTCGGGCGGAAATGCTCGAAAGCGGATGTCGACATTTCGACTCC
CGCGCACAACCGTTACTGTGCTCTTGGTTGCCCAGAGCAGGTGATATCAT
AGTTAACCACGGCGTGTGCCTGGTGCAGCAGCAAAAGGGATACATATGAG
AACCATTTGGGGTCCAAAGCTTTGTTCCGAGAACAAACAACACGTCACTA
TGCAGCAAGAAATAAGTCATGGCGCGGCCATGAACCATATGATGGAATCT
CAAATTGTCAAAAGCCCACGACCTCGCTCTTGCAGCAAGACTGAACCGCC
CTGCACTCGATCCGGTACCCCTACCCTCAACCCCCTAGCGCTGCTGCCTC
ACCTTCCCCCCCACAAATGTAGTGTGCCCCCCGGCATGACTAAGAAGTGG
ATGGCGGCCGTCAAGGAGAAGACCGACAAGCCGTTCCACGTGGCCTTCCA
GCCGGAGTTCCTCCGCGCCGTCTCTTGTGAGGAGGACGCACGGGCGCCAT
GGCAGGTGGTGTTCGGCTACATGCCCGGAGAGGAGGACGTGAAGGCCCGC
ATGGCCAACGCGTTCCTCGAATTCGTCGGCCGGGACGAGTCCAAGCTCAC
CGTGCTGAACATCGCGGAGGCCGAGTTCATGAAGCTCGTGCACAAGTGAG
TAGCAACCAATGATTGTCTTGCTTCCCCTATGCACCGCACATGTTCCTGC
TGCTGTGCCTTGGCAGATTGCCCATCTCCCTCCGCTCCGCCCCAGAGGTA
CAAGATTTCGTGACGTGTCTCGCGATCCACTCCAAGAGATGTAGGGGTTG
CTGATGTGATGTATTCTTCTCTCCCACCGATTCGAAGACAAAAAAAACTC
TTGTGGTGACGTCGAAGGGTCGCATTCGGCAATTTGGACAAAACCTTTCA
GCCGGGTTGACCGACGTCAGTGGATCCAGCGCCGCCGGCTGCAGATACAT
CACATTGAACAATTCTTGCTACGGCCGGCCTGGATAAACATGAAATCCCA
CGGAGGCGTGGTTGTTCCCCAATTACAGAATAAAGAAGCGCTCGCTTCCC
ATGGTCGCCTGCCAAGGCTGATGCGCCCCTCTAAATCTAAAATACAGTCT
ATACGACAACGATGAAATGAGGAAAGCCGTTGGAGGTGGTGGTCCGCAAA
TCGAACCCGCACCAAGCGATGTCTGTTACCGTGTTTGGGTCGAGTGTGGA
AGGTTGCCGCTCGTTCGTTCACACACTAGCAGCAGCCGCCGGGCGGCCGC
TTTGGTAAGCATGGCCTCTTGAAACCACTTCGCACAGCCCTGCGATTCTA
CTGCTCATGCTCTCTCCTGATGAGTGCTGGTGCTGTGTGTTGGTATTTTA
CTCTGCTACCAGGCACACGGTAGTTTCGTCCCGCAACCGCCAACTGGAGG
GCAATCAATAAATCAAAGCAGCTGGCAACGGCTGCATTTCTTTTGTCTTG
AAACTACTGGATGTAGCGGGCGTTGATGCCATCTCGAAATGGAGAATCTA
TCTTGTCTGCCACGTATGTCACACGTATGTGTGCGTCTCTACAGCAACCT
ACTGTTCCATGTACACAACAGATAGCCTTCACAATGATGCACCGGGTGTG
AAATGCGCATCCAAGAAATCCTTTCGATGCAGCCCGCCGGCCCGACTCTG
ATTTGGCGTGCATTCTCGTTTGCAAAGTGGGACCCTTAAGATACCACTTC
GCGTTCCCTTCACCTGCACTGAAATACAGGGAGAGTTTGCGGATGACACA
GCAATCATAGTGTGACCAAATGAGCTTCCGAAATCCGTAACACATTCAGC
AGTCCGCGTTCCGCGCTCGGAGCGCCCTCCCAACACCACTGCCTCTGCCC
TTGTCCTTTTCACAAATCCAAGCGGAGATTAGTCGAGCCGCCAACATAAC
CAATCACGACGCAAGTCTTCTAGCCGTGCGTGTCGTTATGCATAGGGGGG
ACTACAACTGTCTAGCGAACCGAACGGCAAGTAATTAACTCCGGATAGAG
AAGAGAAACTTCGCATTTCTCCGAACATGCCCCCTGTTCCATATCTAGGA
CGTCTGACGGGTCGAAAATACTGTGTATGTGGTTTGTTCTATATTTGCGA
TTCAATTAACTCGTCATACACTGCGTGTCCCGTCTCATCCCTAATCTGCC
TCTCCTGTAGCTACGCGAACGGGCTCAAGATCTCCTTCGCCAACTGCATC
TACGGCCTCGCCAACGAGCTCGACCCCACGATCGACGCTCAAAAGGTTCT
CTACCTGGTGTCCTCCACCGCGGAGTGCTTCCTCAGCCGCAAGTACGGCC
TCCGCGTGGGGGCGCCGTACGGCGGCGTGTGCTTGCCCAAGGACGTGCCG
GAGCTCACCAGCCTCGCGCCAGAGGGCTCCGTGTTCAGGGAGTTCCTGTC
GGGGACCGGCAAGATCAACGAGTGGATCTCGAGCCCTGAGGCCAAGAACA
TGCGGGTGGAGCTTGACGAGAGCCCCAACTGGGTGTCCCCCGACGCCCTC
ACCACCTAATTGTGATAATTGGTTGGGATAGTGTTGGTTCGAGTTGTGTG
GGCGTGCTCTCTTTTGAGCTTGATTTGTAGTGTCGAAGGCGGAGATGGTG
GAGCATAAACGCCACTCCCATTAGTGACTGCCATCACACGTAATCGTTGT
CTGTTGTGGTGAGGAAGCGGAACGTTGTTGTCTGTTGGAGTGGCGGCAGT
TAGTGCTGTACCAACACCTCTCGGTTGGATTTTTCCCCTTGTAGTCATGA
AGGATCGGTTGACCCTCCTGTTGTGTCGGCGGGCTCTGTATTTTGTTGCG
TTCTGAGCTGCCGAACAGCCGGCTAGATCTGAGCGCTGGACGCGGGCGTC
GTTCTCCTGGCGAAAATGTGTGGTCTTGTGTGAGAGAAACATTCAATTTC
TTCGATTGTCGTTGTACTGCTGTATTAGTGTCTTTGTCCTGTCTGTCTCC
CTCTACACGTTTTCTGCACCTCGAATTGCGCTCTCTGTTCACTCCCGGCT
TCGCTTCCATGTGGAAGGCATTCCGCTTTCTTATTCAGGGTGCGATTTAT
GAAGAACCGCGATTGATGCTGATGGTCGTTCATGGCTTTAATGATTTCCT
AGTGTTTTTTTTATGAACAAAGGGTATGAAGTGCTTTTAGCAAAGAGAAT
TAGCTGATCGGTGTTGGTGAGAGGTAAGAAGATCATCCACCTTTTGATGT
GGTTTTATCGTAACTCAACTTCTGGTTGGAAGGGTGTGGGATGTGAAAGG
GGGCCGTGACGTGACGGCTTGCGTGGTGTGTCTTTCGTCCGGCCCTTGGG
CCCCGTCGTTATCATAGCAGACGAGATGCGGAAGTCCGCGACGCACAGGC
GTCGAGCTTGTCAAAAGCTTGAACCAAAGCCCGTCATGGCGGCAACCCGT
CCTCGTGCGCACGTGACATGGCTCTCACCGTTTGTTGCAAAGGGGTGTCG
GCTACATAGTTGTAGCTCATGGTGTTCTGAGTACTCGGGGTTGACTGTAA
TATACGCTCGTGTCGAAAATTTGGTGTCACGAAGGAAAATGAATGTTGAG
GGATGGACGCTTTCATACCTTGGCACGACGACTGACTGCACACTTCTTGA
TACCGTCAAGTGAGTCGTCAGTTTTGCGTAATGGCCACTCTCCGTCGTCG
GCAAAAAAAGTGAAAAGTACTCGTTTCGTCGCGCTTCTTACATCGTGGGC
CCGCCCACACGGTCGTGTGACATGCATACACTGGTGGTTCGTTATCTGGC
CTCTCTTTTGTGTGTGCCTGGTGGCGGCGATGAGAACGGAGACCAACTTC
CACGAGTTGGCGTGTTTCTTCACGACCCAATCGTTCCTGCTGTGTGGGTG
AAGGACTCTTTTATTATCGGGGAGTGGTCGAGGCCTGGCGAGCCCGAACT
TAACATACATTGTACGATGCCGTCTCGAACGGGAAAAAAAGCTTTCGACA
CACCTTCCGACATGCTGTATGTAGTACGGCTACTAACAATTGAAGTGAGT
GCCCAGACTTGAAATGAAATCAAATTTAGACTTGTCATCT back to topCoding sequence (CDS) from alignment at Scaffold_70:117585..122524+ >EsuBft917_5a-0001 ID=EsuBft917_5a-0001|Name=EsuBft917_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=957bp|location=Sequence derived from alignment at Scaffold_70:117585..122524+ (Ectocarpus subulatus male Bft15b)
ATGTCCGGAAACAAGGAGTCTATCATCCAGGTTGGGTGCGGTGTTGTCGG
CGGGGCTTACGCGAAGGCGTACAAGCACCACGGCTTCGAGGTGCGCGGCT
TTGATGTCGTGCCTGCCATCATCGAGAAGATGAACGAGGCTGGCATCCCC
TGCTGCCACCCGGACAACTGCCCCGACGACCTTAACCCCGAGATCGTCCT
CCTGTCGGTACCCACCCCGCTCATTAAGGAGACCCAGCGCCTCGACATGA
AGTACGTCTGGTCGACCTTGCCCCTTGTGGTGAAGCTCATCGAGCAGTCG
ACGGGCAGCACCCCGATCTTCGTGATCCGATCCACTGTGCCCCCCGGCAT
GACTAAGAAGTGGATGGCGGCCGTCAAGGAGAAGACCGACAAGCCGTTCC
ACGTGGCCTTCCAGCCGGAGTTCCTCCGCGCCGTCTCTTGTGAGGAGGAC
GCACGGGCGCCATGGCAGGTGGTGTTCGGCTACATGCCCGGAGAGGAGGA
CGTGAAGGCCCGCATGGCCAACGCGTTCCTCGAATTCGTCGGCCGGGACG
AGTCCAAGCTCACCGTGCTGAACATCGCGGAGGCCGAGTTCATGAAGCTC
GTGCACAACTACGCGAACGGGCTCAAGATCTCCTTCGCCAACTGCATCTA
CGGCCTCGCCAACGAGCTCGACCCCACGATCGACGCTCAAAAGGTTCTCT
ACCTGGTGTCCTCCACCGCGGAGTGCTTCCTCAGCCGCAAGTACGGCCTC
CGCGTGGGGGCGCCGTACGGCGGCGTGTGCTTGCCCAAGGACGTGCCGGA
GCTCACCAGCCTCGCGCCAGAGGGCTCCGTGTTCAGGGAGTTCCTGTCGG
GGACCGGCAAGATCAACGAGTGGATCTCGAGCCCTGAGGCCAAGAACATG
CGGGTGGAGCTTGACGAGAGCCCCAACTGGGTGTCCCCCGACGCCCTCAC
CACCTAA back to top
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