EsuBft917_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft917_4a-0001
Unique NameEsuBft917_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:114191..117423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3K5
ProteomeIdEsuBft917_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length75
Evalue2.23e-108
EggNOG OGsKOG3133@1|root,KOG3133@2759|Eukaryota
Ec32 ortholog descriptionPex19 protein
Ec32 orthologEc-19_005000.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePEX19
KEGG koko:K11804,ko:K13337,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2,3.A.20.1,9.A.17.1
KEGG Pathwayko04142,ko04146,ko04216,ko04978,map04142,map04146,map04216,map04978
GOsGO:0000151,GO:0000268,GO:0002119,GO:0002164,GO:0003674,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005829,GO:0005886,GO:0005903,GO:0006457,GO:0006464,GO:0006605,GO:0006612,GO:0006625,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016043,GO:0016557,GO:0016559,GO:0017038,GO:0019538,GO:0019899,GO:0031090,GO:0031224,GO:0031253,GO:0031461,GO:0031526,GO:0031647,GO:0031903,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033218,GO:0033328,GO:0033365,GO:0034613,GO:0036105,GO:0036211,GO:0042277,GO:0042579,GO:0042802,GO:0042886,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043574,GO:0043687,GO:0044085,GO:0044091,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045046,GO:0045184,GO:0046907,GO:0047485,GO:0048285,GO:0048731,GO:0048856,GO:0050821,GO:0051098,GO:0051100,GO:0051117,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061077,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072321,GO:0072594,GO:0072657,GO:0072662,GO:0072663,GO:0080008,GO:0090150,GO:0098588,GO:0098590,GO:0098805,GO:0098862,GO:0120025,GO:0120038,GO:1900130,GO:1900131,GO:1901564,GO:1902494,GO:1990234
Descriptionperoxisome membrane targeting sequence binding
COG categoryS
BRITEko00000,ko00001,ko02000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft917_4aEsuBft917_4aEctocarpus subulatus male Bft15bgeneScaffold_70 114191..117423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_4a-0001EsuBft917_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 114191..116575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_4a-0001-exonagat-exon-21910Ectocarpus subulatus male Bft15bexonScaffold_70 114191..114439 -
EsuBft917_4a-0001-exonagat-exon-21911Ectocarpus subulatus male Bft15bexonScaffold_70 114830..115006 -
EsuBft917_4a-0001-exonagat-exon-21912Ectocarpus subulatus male Bft15bexonScaffold_70 115487..115586 -
EsuBft917_4a-0001-exonEsuBft917_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 116517..116604 -
EsuBft917_4a-0001-exonagat-exon-21909Ectocarpus subulatus male Bft15bexonScaffold_70 117279..117423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_4a-0001-cdsEsuBft917_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 114191..114439 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_4a-0001-exonagat-five_prime_utr-14963Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 116576..116604 -
EsuBft917_4a-0001-exonagat-five_prime_utr-14964Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 117279..117423 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft917_4a-0001 ID=EsuBft917_4a-0001|Name=EsuBft917_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=759bp|location=Sequence derived from alignment at Scaffold_70:114191..117423- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCACTGCTGTCGGTGTCCGACCGGGTCCACTACTTCTGGCTGCTGGTACA
CTGGTCAACGCTCTGCTGTTGGCGCATGTTGCATATCGAGGAAGGAGAAG
GATAGCACGAGAAGGGAGAGAGGGCTAGATTATCGCCTACTGAAGCCTGA
CTGGGGGAGACGATGACTGAAAAAATGGATCCCCGTGAATTCGAGAAGAA
GACGCAGGACGAGCTGGACGATATCCTCAACAGCGCGCTGGACGATCTGG
AGGACGATGAGGACTTCGCCACGGCGGGGACAGACGACCGGATGCAGGGG
GTGGGGGACGCCCAGGGCATCAAGGCCATGGAGGACGACGAAGAAGACCG
AGCGGCCAAAAACCTGCAGACTCTCATGGACGACTTTTCCAACCCTGAGA
TAGCCGAGTCTCTGGAGAAGGCGTTCCGGCACCTGGGGGGGCACGCGGAG
GGGAAGGATCTCCTGGGGGAGAGCCTGCGGGCGGCAAAGGCGGCTGAAAA
GGAGGATGCGGAGAAAAAAGCGAAGGACGCCGGGAAGACCGATCCATTTG
ACAGCATACGACAGGGAGCACCGGATAGACCAGACGACAACCGACCACCT
GCTGCTGCTAGTGCTGCTGCACCAGCATCAGGAGGGGCAGGGGTAGCGGC
GGGCGAGTACGGGTTTGGAGAGGGGGAGGGGAGCACGGATATGGACCGGA
CGATTTTTCGGACGCTGGAAATGCTGTCGAAGGTGGGTTGGCCGGGGGGG
GGGGGGNNN
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protein sequence of EsuBft917_4a-0001

>EsuBft917_4 ID=EsuBft917_4|Name=EsuBft917_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MDPREFEKKTQDELDDILNSALDDLEDDEDFATAGTDDRMQGVGDAQGIK
AMEDDEEDRAAKNLQTLMDDFSNPEIAESLEKAFRHLGGHAEGKDLLGES
LRAAKAAEKEDAEKKAKDAGKTDPFDSIRQGAPDRPDDNRPPAAASAAAP
ASGGAGVAAGEYGFGEGEGSTDMDRTIFRTLEMLSKVGWPGGGGX
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mRNA from alignment at Scaffold_70:114191..117423-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft917_4a-0001 ID=EsuBft917_4a-0001|Name=EsuBft917_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3233bp|location=Sequence derived from alignment at Scaffold_70:114191..117423- (Ectocarpus subulatus male Bft15b)
CCACTGCTGTCGGTGTCCGACCGGGTCCACTACTTCTGGCTGCTGGTACA
CTGGTCAACGCTCTGCTGTTGGCGCATGTTGCATATCGAGGAAGGAGAAG
GATAGCACGAGAAGGGAGAGAGGGCTAGATTATCGCCTACTGAAGGTCGG
TCACCGAATACCGTCTCGAGCACGTATGCTTACCTTTTCCCACAACGCTA
AATATAAATATTGAAGATCTAGCCTGCGGCCATGGATGCCATTGCCAGAG
ATGCAACTCACAAACAACACTTCCGCTAACGCAACAACCGCCGAGCAGTA
AGTGGCAGACGCATGGCGTTCGGTGCGATGGTTCTTACGCGTCGGTTGCT
GTTGGTGTATCCCCAAATTTGATACAAAAGTTTGATTGTGTTTCGGTAGG
ACCCGCTCTTCCTATGAAGTATGCCCTGACGTGTGGGCGAGGTAACGACC
CAACAGCATAGCGCTTGTAGCTCGCGGGATAGCTGAGAAGAAGCAGGGAT
GCATACGCCTGCTGTTTGCATACGCGAAGTTTCTACTCCCTGACGTCTAC
CTCTGGTGTTGCTGACCCAAGTGCACGCGTAGCTGACCCTGTGTCTGCCG
CTGCAATCTCGGGGATATGCACGCCGGTGCATGTTGAACTCTGCTCCATG
CCCATGTTATTCACACCGATGGTCGAGCGAATGCTAAGTCCAACGACTAA
ACTTTTCGTAGCCAAAGCCATTGCATCCAAAACTGATTCACGGGTACCCG
GCCTCTTGGCTATATACTATATATTGACGCCTATGGTCCCCAACGGCACA
CGTCAATCGAATACTGAAGCCTGACTGGGGGAGACGATGACTGAAAAAAT
GGATCCCCGTGAATTCGAGAAGAAGACGCAGGACGAGCTGGACGATATCC
TCAACAGGTGCGTCGGGCAAACTAAATTGCCATGCGCATAGCGGCGTTGT
GTATGGAACCCAAACATACGGGGCGCGATTCAAGCTCGTGGTGGTGAATA
GAAGAGACAGAGGGACACAGAGGCAGAGACAGAGATAAACGGACCGCGAG
AGAGAGTGAGAGAGAGGGGGGCGATCCACAACCTCGAGCGGTTGAAGGTG
CACGCCTGAGCCAGGCGACATGCCCCGCAGACGGCAAGAAGCCTGACTGG
CCCTACCTACCTTCGCTACAGTCTCGCAAGCGTTGGTCGACCGTCCTCGA
GGGCAGGGGTTGAGGAATGTACTCTCACTCTCTGTCGGAAAATCTGATAT
TCAGCACTCACTCAAAGTTATTCAGCACGCAGCGTGCTCCCAAAAATTAG
AGTGCCCTTGTAAATCAACGACTGCTGTGGCTGCAACATCCAACGTAACT
CGACATAGGATTCGACACACTCTGGACCGGTGGTCAAAGCACGTAAAGAA
TGTATATTTCATGACCCGAACGCGGAGAGGTGTAACCACACGCGTGCTGG
CGGTCGTCCTGTAGTGTTTTCGTCCTCGACCAGCATGTTGTTGCCGACGC
AGTTAGTGTGGTGCTACATCACCACTGCTGATGGCTGAGTGGTTGGAATA
TCCCAACGTCTCCGCGTAGGACGGGCTGCTGGTGACCGTTGCTGTAGGCG
ATGTAACGACTCCATGAAGAGTTTGTCAGTAGAACAGTATGTGCATACAT
CAACTTCCACGCCATGAGCGTGATGTCGTGGTCTGGTGGTTGTTCTTTCG
TATGGATGGGTTTTGTCATGCGTGTGCAGACGTTTTGGTCATGAACCAAG
CATTTATAGAACGCTGACTCTGCGAGTGTTGTCCACGTGTGCTTACGCCA
ATGTCACAATGTCGCGGTCGGTGTTGCATTCAACCAGCGCGCTGGACGAT
CTGGAGGACGATGAGGACTTCGCCACGGCGGGGACAGACGACCGGATGCA
GGGGGTGGGGGACGCCCAGGGCATCAAGGCCATGGAGGTGCTTGAGTTGC
CGACTAGTAGATGTTACGTGCCTTTGATGTAACCTATTTACTGCGCAGTT
CTCAAGGCTTGGTATTGCTCGGCAGGAGAAGGATAGGTCCATTAGTCAAC
CATTGCACCGCAAGAGGGGTGCCGTTGCCGAAGTAGTTAACTAGTTGATT
GCTGTGGACGTACGTCATAGATAGCCCGCAAATCAGCGCTGTAGCAATCA
CTGTCGATTTGTTGTGGACAAAACATGCGCTCAACATTTGTGCAGGAGTA
TGTCGTCTACTTCATCCGTGTTAACCAGGCTATTCCCAAGCGTTTTCCAG
GGGTCTTCATTGTGTCCTACTGCCACACACCATCTGCTGTTGCACCACCG
CACGATATGACTCGAGACACGACCTCGAGAGTACAAGTGATCTGAGAGAC
CGTTGTGAACGAAACCTAGCCTTGACGAATAACCGACCAAACCCCGGTGG
CCGGCGACATGCGGTAGGACGACGAAGAAGACCGAGCGGCCAAAAACCTG
CAGACTCTCATGGACGACTTTTCCAACCCTGAGATAGCCGAGTCTCTGGA
GAAGGCGTTCCGGCACCTGGGGGGGCACGCGGAGGGGAAGGATCTCCTGG
GGGAGAGCCTGCGGGCGGCAAAGGCGGCTGAAAAGGAGGATGCGGTGAGA
CAAAGGGATGCATGCGTCATCCTTGGTGGTGGTAGTGGTGGTGGTTGTCC
TTCGCCCTGGGCCGATCATGGGAGCGAAGCAGTCGGTCGTGGATTATTAT
CCTGGGCTAAACGCTAGAGTGGTGCGGATGTTGGAGGCAGTGGTGGCTGG
GTTGATTGTTGGTGATGGTTTGTTGTGTCATGGGTTGTGTGTTGTCGTAT
CAGAACGCAGGGACCCGTAGGGAGAAAATGAGGCCTCTCGGACGCATACG
TACTTCAGACGCATCGATCGATTGCCCTTCACATGATTGCCGAAACCGTC
ACCATCCAAAGCAACACTGATCTCCCAGCCGCAACTCGGTCGCTCCTCCG
TGGGCGCAACGCCCATGCTCCCGTCCCCAAACAGGAGAAAAAAGCGAAGG
ACGCCGGGAAGACCGATCCATTTGACAGCATACGACAGGGAGCACCGGAT
AGACCAGACGACAACCGACCACCTGCTGCTGCTAGTGCTGCTGCACCAGC
ATCAGGAGGGGCAGGGGTAGCGGCGGGCGAGTACGGGTTTGGAGAGGGGG
AGGGGAGCACGGATATGGACCGGACGATTTTTCGGACGCTGGAAATGCTG
TCGAAGGTGGGTTGGCCGGGGGGGGGGGGGNNN
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Coding sequence (CDS) from alignment at Scaffold_70:114191..117423-

>EsuBft917_4a-0001 ID=EsuBft917_4a-0001|Name=EsuBft917_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_70:114191..117423- (Ectocarpus subulatus male Bft15b)
ATGGATCCCCGTGAATTCGAGAAGAAGACGCAGGACGAGCTGGACGATAT
CCTCAACAGCGCGCTGGACGATCTGGAGGACGATGAGGACTTCGCCACGG
CGGGGACAGACGACCGGATGCAGGGGGTGGGGGACGCCCAGGGCATCAAG
GCCATGGAGGACGACGAAGAAGACCGAGCGGCCAAAAACCTGCAGACTCT
CATGGACGACTTTTCCAACCCTGAGATAGCCGAGTCTCTGGAGAAGGCGT
TCCGGCACCTGGGGGGGCACGCGGAGGGGAAGGATCTCCTGGGGGAGAGC
CTGCGGGCGGCAAAGGCGGCTGAAAAGGAGGATGCGGAGAAAAAAGCGAA
GGACGCCGGGAAGACCGATCCATTTGACAGCATACGACAGGGAGCACCGG
ATAGACCAGACGACAACCGACCACCTGCTGCTGCTAGTGCTGCTGCACCA
GCATCAGGAGGGGCAGGGGTAGCGGCGGGCGAGTACGGGTTTGGAGAGGG
GGAGGGGAGCACGGATATGGACCGGACGATTTTTCGGACGCTGGAAATGC
TGTCGAAGGTGGGTTGGCCGGGGGGGGGGGGGNNN
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