EsuBft917_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft917_10a-0001
Unique NameEsuBft917_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:164542..166207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft917_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length95
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-19_004930.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft917_10aEsuBft917_10aEctocarpus subulatus male Bft15bgeneScaffold_70 164542..166207 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_10a-0001-exonagat-exon-21931Ectocarpus subulatus male Bft15bexonScaffold_70 164542..165372 +
EsuBft917_10a-0001-exonagat-exon-21932Ectocarpus subulatus male Bft15bexonScaffold_70 165874..165987 +
EsuBft917_10a-0001-exonEsuBft917_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 166199..166207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_10a-0001-cdsEsuBft917_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 164542..165372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_10a-0001EsuBft917_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 164542..166207 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft917_10a-0001 ID=EsuBft917_10a-0001|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=954bp|location=Sequence derived from alignment at Scaffold_70:164542..166207+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCACCTTCGCCCATGAGGGATATGACGCCTGCTGGGCTTGTAA
CGACCCCTCCTTCAGCTACTTCCTTGTCAGCGGCAGCCTCGCACCGGTGA
AAATCATCCCAAACCGCTTATCGGCATCGCTCCAGAATCCTACCCCGCTA
CGCTACGCCGGCACGAGCAATAGTCTGAAGCACACGCTCGGCGTTGAGCT
CACCGCATCTGAGGCGCAACTGCGGCAGGACCGCTGCGAGCATTCTGCAA
GGCTGGAGGCGCACGAAAGCAACGCTGAAAAGGGGACCGCCGGAGGAGTT
CACCATCCAGCTGTTTACGGGGTCCAAATCCCTGGTACAGCCCGCTCACC
GGGCGACAAGAGCAGCAGCACCGCCGGGTCTACCTGGAGCCCTGTGGCGC
CGAGGAAAGACGGCGGCTTGACGTCCGACCACGGTGGTGGTGGTGGCAGT
GACATCGAGAGCACCCCTGGCGGAGGGATTTTTTCCGTCCTCAAGGCAAC
AAAACCCTCTGAGATCAACGCGTCGGAAGTCGACTTCTCTACAAACGAAG
GGAGAGAGACCCCCCTCTTGCTGCCGGGGCAATCCCTCGACTGCTATCTG
TTGCTACACCGCGTCAAGGTGATCGGCCCGGAGAGAGACCCCGACAAAGC
GGTAAGCCCCGAAGTCGTTCCGGCCGCGGCCGAGAGAGTTACTGGGACGA
CACGGTGGAAGCTAGACGCTCGACAGGGGTCGTGCATCGGCAAGGTGAGC
CGCCGATTTTTGCGGGAGCTCGAGCGCGAGGAGGCGAAGCACGAGACGGA
AGTGAAGGTTTCTTTCCTTCGACAGACCGAGGTGTTTGGGAAAGGATTTA
GTGCCGCAGCTCTTGAGCAAGTAGCCCTGCTCATGGAGCGTCGGAAAGAG
CCCGCAGCAGCCGTGGTACGGCGAAAAGGCTCTGCAGTGGACAAGGTTGA
GTGA
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protein sequence of EsuBft917_10a-0001

>EsuBft917_10 ID=EsuBft917_10|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MSVTFAHEGYDACWACNDPSFSYFLVSGSLAPVKIIPNRLSASLQNPTPL
RYAGTSNSLKHTLGVELTASEAQLRQDRCEHSARLEAHESNAEKGTAGGV
HHPAVYGVQIPGTARSPGDKSSSTAGSTWSPVAPRKDGGLTSDHGGGGGS
DIESTPGGGIFSVLKATKPSEINASEVDFSTNEGRETPLLLPGQSLDCYL
LLHRVKVIGPERDPDKAVSPEVVPAAAERVTGTTRWKLDARQGSCIGKVS
RRFLRELEREEAKHETEVKVSFLRQTEVFGKGFSAAALEQVALLMERRKE
PAAAVVRRKGSAVDKVE
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mRNA from alignment at Scaffold_70:164542..166207+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft917_10a-0001 ID=EsuBft917_10a-0001|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1666bp|location=Sequence derived from alignment at Scaffold_70:164542..166207+ (Ectocarpus subulatus male Bft15b)
ATGTCCGTCACCTTCGCCCATGAGGGATATGACGCCTGCTGGGCTTGTAA
CGACCCCTCCTTCAGCTACTTCCTTGTCAGCGGCAGCCTCGCACCGGTGA
AAATCATCCCAAACCGCTTATCGGCATCGCTCCAGAATCCTACCCCGCTA
CGCTACGCCGGCACGAGCAATAGTCTGAAGCACACGCTCGGCGTTGAGCT
CACCGCATCTGAGGCGCAACTGCGGCAGGACCGCTGCGAGCATTCTGCAA
GGCTGGAGGCGCACGAAAGCAACGCTGAAAAGGGGACCGCCGGAGGAGTT
CACCATCCAGCTGTTTACGGGGTCCAAATCCCTGGTACAGCCCGCTCACC
GGGCGACAAGAGCAGCAGCACCGCCGGGTCTACCTGGAGCCCTGTGGCGC
CGAGGAAAGACGGCGGCTTGACGTCCGACCACGGTGGTGGTGGTGGCAGT
GACATCGAGAGCACCCCTGGCGGAGGGATTTTTTCCGTCCTCAAGGCAAC
AAAACCCTCTGAGATCAACGCGTCGGAAGTCGACTTCTCTACAAACGAAG
GGAGAGAGACCCCCCTCTTGCTGCCGGGGCAATCCCTCGACTGCTATCTG
TTGCTACACCGCGTCAAGGTGATCGGCCCGGAGAGAGACCCCGACAAAGC
GGTAAGCCCCGAAGTCGTTCCGGCCGCGGCCGAGAGAGTTACTGGGACGA
CACGGTGGAAGCTAGACGCTCGACAGGGGTCGTGCATCGGCAAGGTGAGC
CGCCGATTTTTGCGGGAGCTCGAGCGCGAGGAGGCGAAGCACGAGACGGA
AGTGAAGGTTTCTTTCCTTCGACAGACCGAGGTGAGCGAGGGCAACGCCC
TTCGTCGAAACAGGTGTTTATTGCGGCACCCGGACGGTGTACAAGTACTG
TATGTGGGGTGTACATCTAGCCAAAAAAGAAGCCTCAAGTTACCCTGTGT
TTTCAGCAAGGTTTTTGTGTCAGCGCCTGTCGCCACAGTGCGGAATCGAG
GCATCCCGTGCTTTCGAAAATTAAGCATAACCTTGAGACGAGCGCCATCT
TCCGAAAACCAGACAAAATTTGTTGGCTATACAATGAAACACTCACATCC
ATTCGGAAGCAACGAAACAATCGGCAAGAAAGCAAAATATACCACACACA
TAGCCCTCACGCACCCATCACTAGTGCAGAAGGTTAGGAAAGAAAATGGC
ACGTCCTAACCGAGCACTTCGGTGGGAGGCATTTACCTCTCCGCTGTTTC
TTTTGTCCATTGACAAATGGAGTGGAAGTTCCGGGTCAAGGTTGTCGGGG
CTCAACAGCGCCTCTTTCCGTGTCTGCACCAGGTGTTTGGGAAAGGATTT
AGTGCCGCAGCTCTTGAGCAAGTAGCCCTGCTCATGGAGCGTCGGAAAGA
GCCCGCAGCAGCCGTGGTACGGCGAAAAGGCTCTGCAGTGGACAAGGTTC
GTCCAGGCGAAGGCTTTGGCCGCCGTGGGACCGTCGCGAATAAATCCCCC
CCCCCCCCCCCCCCGCAATCTAGACTTCAGTGGGTTGGCGCTGTTGGCAA
AGCGCTGTAAAACACGCCACCCCAAATATAGCCCCCATAGTATGCGCTAC
CAAAGACGCGTGACGCATGGATGCGTGGAGTGAGGATTGCTTACGGAAAC
CTCACAGGTTGAGTGA
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Coding sequence (CDS) from alignment at Scaffold_70:164542..166207+

>EsuBft917_10a-0001 ID=EsuBft917_10a-0001|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_70:164542..166207+ (Ectocarpus subulatus male Bft15b)
ATGTCCGTCACCTTCGCCCATGAGGGATATGACGCCTGCTGGGCTTGTAA
CGACCCCTCCTTCAGCTACTTCCTTGTCAGCGGCAGCCTCGCACCGGTGA
AAATCATCCCAAACCGCTTATCGGCATCGCTCCAGAATCCTACCCCGCTA
CGCTACGCCGGCACGAGCAATAGTCTGAAGCACACGCTCGGCGTTGAGCT
CACCGCATCTGAGGCGCAACTGCGGCAGGACCGCTGCGAGCATTCTGCAA
GGCTGGAGGCGCACGAAAGCAACGCTGAAAAGGGGACCGCCGGAGGAGTT
CACCATCCAGCTGTTTACGGGGTCCAAATCCCTGGTACAGCCCGCTCACC
GGGCGACAAGAGCAGCAGCACCGCCGGGTCTACCTGGAGCCCTGTGGCGC
CGAGGAAAGACGGCGGCTTGACGTCCGACCACGGTGGTGGTGGTGGCAGT
GACATCGAGAGCACCCCTGGCGGAGGGATTTTTTCCGTCCTCAAGGCAAC
AAAACCCTCTGAGATCAACGCGTCGGAAGTCGACTTCTCTACAAACGAAG
GGAGAGAGACCCCCCTCTTGCTGCCGGGGCAATCCCTCGACTGCTATCTG
TTGCTACACCGCGTCAAGGTGATCGGCCCGGAGAGAGACCCCGACAAAGC
GGTAAGCCCCGAAGTCGTTCCGGCCGCGGCCGAGAGAGTTACTGGGACGA
CACGGTGGAAGCTAGACGCTCGACAGGGGTCGTGCATCGGCAAGGTGAGC
CGCCGATTTTTGCGGGAGCTCGAGCGCGAGGAGGCGAAGCACGAGACGGA
AGTGAAGGTTTCTTTCCTTCGACAGACCGAGGTGTTTGGGAAAGGATTTA
GTGCCGCAGCTCTTGAGCAAGTAGCCCTGCTCATGGAGCGTCGGAAAGAG
CCCGCAGCAGCCGTGGTACGGCGAAAAGGCTCTGCAGTGGACAAGGTTGA
GTGA
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