EsuBft913_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft913_5a-0001
Unique NameEsuBft913_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1023035..1026618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft913_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length107
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_005720.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft913_5aEsuBft913_5aEctocarpus subulatus male Bft15bgeneScaffold_499 1023035..1026618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_5a-0001EsuBft913_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1023657..1024307 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_5a-0001-exonagat-exon-84678Ectocarpus subulatus male Bft15bexonScaffold_499 1023035..1023866 -
EsuBft913_5a-0001-exonagat-exon-84677Ectocarpus subulatus male Bft15bexonScaffold_499 1024197..1024351 -
EsuBft913_5a-0001-exonEsuBft913_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1026529..1026618 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_5a-0001-exonagat-three_prime_utr-23007Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1023035..1023656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_5a-0001-cdsEsuBft913_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1023657..1023866 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_5a-0001-exonagat-five_prime_utr-14947Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 1024308..1024351 -
EsuBft913_5a-0001-exonagat-five_prime_utr-14948Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 1026529..1026618 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft913_5a-0001 ID=EsuBft913_5a-0001|Name=EsuBft913_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1077bp|location=Sequence derived from alignment at Scaffold_499:1023035..1026618- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCACACAAGGCACCATGCTCCTCGCTGATACCTCAGCCTAGACCTCCAC
CCATCAAAGAACGAAGTAATAACCAGGGGGGACATTTCAGGGAACAAACC
TAGAGCTGCATCGTCAGGAGAAACACCAGCAAGCATGACTAAGTCAGAAG
GAGCGAAGCCGGCTGGTGACCTGCAGGCTAAAGTGACGGGCGTAAAAAAG
CTTTTGGCGCACTTCAAGAAGAAACTCACAAGCGTCAAGAAACAGCACAA
AGAGGCCGAGAAGGCCCTCAAGAAAGTGCAAAAGCAAGCCGAGCAAGCAA
AGAAGAAGATGGGTGGCGACGACAAGAGCGACGACAACGACAGCGACAAC
AACGAGGCCAAAGACGGTGATGATGCCGAGGAATGTGATGCCGGAAGCGA
CACGATGGGTGCCGAGGCCGGAGATGGTGATGGTGCCGAAGAGCTTGCTA
GTTAACGGAGGGAAATGTGAAGGCGAAGAGTGTGTTGCTGTCCCAGCACC
ACCGTACAACAAGTAGAATTGCGGATGCTGGATTGGTGGCGCAACGAGCT
CGCCGAATCGATGGCGTATGCCCCGACCACAGAAGGATTGGAGGACATCT
ACGATTGATTGACTGCTGACACTGCTGTCAAGATTCATCGTGGTAGGGTT
GTTCATTTGACAGGCTGGTTCGTTCGACCATGCTGCTTTGTGATATCGAA
GGAGGACGAAGACGACAAACCATGGTGATTGGTTGCTCGGGTAACGCATG
AATGGTTGCGTCATCGATCTCTGCTCTTGGCGTTATCGCTACTGGATGTA
ATCCTTGGCTGGGGAAGACGAAGAATGGGTAAAGAAGAGAACAAACAGCA
GAATAGTGACTTGCAATTTTCGTGCGTGTCGGGGCCGCGACTAGAAGTAA
ATATGTTGCAGTCTGGGTGGACGCTCGAAAACGTTCACAGCTTGTGACCA
CCCGAAAGGTGGCGGAGGCGGTGCATTGGGCGGATCCGGCCGAAAGAACC
GTGCAGAGGCTGTTCGTTCCATTTTGTGGTCGCCGTGCAACCTGGTAGAT
ACCCCATCTCGAGCTTCGCAAAGCAAC
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protein sequence of EsuBft913_5a-0001

>EsuBft913_5 ID=EsuBft913_5|Name=EsuBft913_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=106bp
MTKSEGAKPAGDLQAKVTGVKKLLAHFKKKLTSVKKQHKEAEKALKKVQK
QAEQAKKKMGGDDKSDDNDSDNNEAKDGDDAEECDAGSDTMGAEAGDGDG
AEELAS
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mRNA from alignment at Scaffold_499:1023035..1026618-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft913_5a-0001 ID=EsuBft913_5a-0001|Name=EsuBft913_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3584bp|location=Sequence derived from alignment at Scaffold_499:1023035..1026618- (Ectocarpus subulatus male Bft15b)
GGCACACAAGGCACCATGCTCCTCGCTGATACCTCAGCCTAGACCTCCAC
CCATCAAAGAACGAAGTAATAACCAGGGGGGACATTTCAGGTGAGTTTGC
AAACTAATGTACGCACGCACCTGACAACACACTCAGACTTTGTTTACCAG
CGGAGCCGTCCATCCATTCATACGGAAGAGGTATTGGTTGTTGTTGTTGT
TGTTGTGTTCGTCGAAGTTTCGGTCCCTACACGCCGCAAGGCGGACCGGC
GGTGTTGTGCTGGATCTCCTACCATGAACGCGCACGACTACTGCATGCAA
GTTGCATAGGTATGTCCAATGATTGGTAAACGCTGTCCTTGCATGTATGA
CAGACTGGTCAGCATTGCATGGCGATTGGAATTGAACGCAGCAGGGGGTG
GAAACAATGTGGCTTCAACACGGGTTGACTGGTGCAACTTTTTTGGGCCT
GAGCAGCTCCAACCGTGTTGTGGCAGCGTCACTGGCAGAACGCACGCTTG
CCTTGTCTTCAAACGAACGCATACCAAACTGCCTTAACTCTGTCCCACGG
ATTTTGAAAGCCTATGCTGGTGCGTACGCACGTGTGGAAGGTTGGTTTAC
AGCACCACATACGACGATTCGATCCCGGTGCCAAGCGTGTATGGTATCCC
ATTTATTTTCTCATTTTCTTTCGCGATGGCATTCAATTCTCGAACGTACG
TCTGTTCCATCTACATCTATGTCGTGAATACAACAATTCTGCATACATAA
CTGCAACGCGGAGCACCCTACCAAATACGCATGTATGTAATCCGTTGCAC
ACGTCTCACAGTCATGATGTCTTAACATCGAACGAAGGTTGGAGCAGCGT
GTTATCGCTCGCCACAACAACAACAGCATATCGGAACGAATCAAGAGCAC
AACATGTCAATTCGCTGCACACATTATATGTAGAGTGGCAACAAAGAACG
GGAATGAATGGATGTGTTAAACAAGCACGACGATCACTAGACCACCAGTC
AGCGCTGACTGGTGGTGTAGTGGACATCGTGCTTGTCTAGCAGAATGCAC
TTGTTGTCTACGGAGCAACTAGTTTGTGGGCTGTCTGAGCGTGTAATTGG
GCTCTAAGATAACGTTTGGCAACTAATGAGGGGGGGCTGGATCTCCTGTC
CTCTCACTCTCCACTTGAAAGTGCTGAGCAGACTTGCCGAAAAAACGACG
GGTCAAGAGGATAAGCAGCGACTACTGTTGTGATTGCCTCCAAGCGAACA
ATTAGCGGACCTGCTTCCTGTTCTTCTTTCAACTCCGAAACAGAACGGTG
TCATCGGCAAGACTCACTCTGATGTCGTGGGAGGTAATGCACTCTCTCCT
CTCTTTGGCTAAAAGTTCAAGAATTGCAGGGATTTGTCCTGCAGCTCTCT
GTTGTTGTAGCGGGTTGGCGCTGCGTCGGCTTTGTGACCTCCAAACATCT
TCTGTCTACCGATTGACCCAGCCTCTAAGTCCTATGTAACTTATCACTTT
TGACTTTCCGTTCTTCGAGGCTCACTTTTAATTCTTCGAGGCTCACATTA
AAACCCGAATCACTGCACGATAAAACGACATATTCGCTCAAATGAGAGCG
ACGCCAGACCCACAGTCCCGAACGAAAATAACCTACAACCTCCCTATGAT
TAACTCTGCAGAAATTGATAGAGATTTGTTGACATAAGCACCGGTTTAGT
TCGAAGCTGTCATCACACGTACAGCATTCAATGCTTTCTTCGTGTGAAAG
AACAATGAAGATAGTAAGTAAGGTGGATGCAAGCCTTGGGTACGATTCAG
CAAAGTCATTCCCCGCGAAGAAGTACCATAAGCCAGGCGAAATGATTGTC
CAAAGTATTGGAAAATCTGAATGTGGACGTACACGACTTGAAATGACATC
GCTCAAGGTGAACGTGGGGCATCGTTGGTTAGGGTAAAAAGTACGAGGAA
GGCTCGTTGTCGTCGGCAGCCTTCGTTCGGGTTAATAAAAACATGTATTT
ACGCTGCCGACTCGGTCTTCCTCGTCCCACAGGTAGACCTTGCCAATGAT
TTCCAGCGTGTGGTGCGAGATGAAACTTTGTGGAATGGAGTGGCGTTGAT
TCTTCCATCGTCGATCGGACAGAAAACAGCGCTTTCTGCATTGGTAAACG
AAAGTGGTGCGCACCTCATCGATATTGATTGATATTTCCTTCAGAACAGT
GGCACTCCTAATCAACACGACCGTCATCTTCGTGTACTTGCTGTTCCGGT
GTCCTTGTGTGTGTCAGGGAACAAACCTAGAGCTGCATCGTCAGGAGAAA
CACCAGCAAGCATGACTAAGTCAGAAGGAGCGAAGCCGGCTGGTGACCTG
CAGGCTAAAGTGACGGGCGTAAAAAAGCTTTTGGCGCACTTCAAGAAGAA
ACTCACAAGCGTCAAGAAACAGGTAGAACTATACAAATTTGAGTTAAAGA
ACTACCAGTATGATACACCAACCGCTACCGACGCCATAAATATTGGTCAC
GCATTATTCCAGGAAGGGACGCGAAAATATGTAACAAGCCGATCGACCCC
AAACACTAGTAGTGCCGAAATAATTACCGAAATCGACCCTAAACACCGAT
CGATGAAGTTTTCTCGGTTGCATGGTGTCTTGTCAAAAAGAGTGGGCAAT
ACTACGAGGTGGATAGAAGAGCATGCCAGCGGAGACAAACGAGTGTGCTC
TCCTCCCTCCCAACAACCCCAACCCCGTGCGTAAATTTTCGTTCTATGAA
AGCACAAAGAGGCCGAGAAGGCCCTCAAGAAAGTGCAAAAGCAAGCCGAG
CAAGCAAAGAAGAAGATGGGTGGCGACGACAAGAGCGACGACAACGACAG
CGACAACAACGAGGCCAAAGACGGTGATGATGCCGAGGAATGTGATGCCG
GAAGCGACACGATGGGTGCCGAGGCCGGAGATGGTGATGGTGCCGAAGAG
CTTGCTAGTTAACGGAGGGAAATGTGAAGGCGAAGAGTGTGTTGCTGTCC
CAGCACCACCGTACAACAAGTAGAATTGCGGATGCTGGATTGGTGGCGCA
ACGAGCTCGCCGAATCGATGGCGTATGCCCCGACCACAGAAGGATTGGAG
GACATCTACGATTGATTGACTGCTGACACTGCTGTCAAGATTCATCGTGG
TAGGGTTGTTCATTTGACAGGCTGGTTCGTTCGACCATGCTGCTTTGTGA
TATCGAAGGAGGACGAAGACGACAAACCATGGTGATTGGTTGCTCGGGTA
ACGCATGAATGGTTGCGTCATCGATCTCTGCTCTTGGCGTTATCGCTACT
GGATGTAATCCTTGGCTGGGGAAGACGAAGAATGGGTAAAGAAGAGAACA
AACAGCAGAATAGTGACTTGCAATTTTCGTGCGTGTCGGGGCCGCGACTA
GAAGTAAATATGTTGCAGTCTGGGTGGACGCTCGAAAACGTTCACAGCTT
GTGACCACCCGAAAGGTGGCGGAGGCGGTGCATTGGGCGGATCCGGCCGA
AAGAACCGTGCAGAGGCTGTTCGTTCCATTTTGTGGTCGCCGTGCAACCT
GGTAGATACCCCATCTCGAGCTTCGCAAAGCAAC
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Coding sequence (CDS) from alignment at Scaffold_499:1023035..1026618-

>EsuBft913_5a-0001 ID=EsuBft913_5a-0001|Name=EsuBft913_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=321bp|location=Sequence derived from alignment at Scaffold_499:1023035..1026618- (Ectocarpus subulatus male Bft15b)
ATGACTAAGTCAGAAGGAGCGAAGCCGGCTGGTGACCTGCAGGCTAAAGT
GACGGGCGTAAAAAAGCTTTTGGCGCACTTCAAGAAGAAACTCACAAGCG
TCAAGAAACAGCACAAAGAGGCCGAGAAGGCCCTCAAGAAAGTGCAAAAG
CAAGCCGAGCAAGCAAAGAAGAAGATGGGTGGCGACGACAAGAGCGACGA
CAACGACAGCGACAACAACGAGGCCAAAGACGGTGATGATGCCGAGGAAT
GTGATGCCGGAAGCGACACGATGGGTGCCGAGGCCGGAGATGGTGATGGT
GCCGAAGAGCTTGCTAGTTAA
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