EsuBft913_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft913_3a-0001
Unique NameEsuBft913_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1016217..1016628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft913_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length41
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft913_3aEsuBft913_3aEctocarpus subulatus male Bft15bgeneScaffold_499 1016217..1016628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_3a-0001-exonEsuBft913_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1016217..1016628 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_3a-0001-exonagat-three_prime_utr-23005Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1016217..1016451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_3a-0001-cdsEsuBft913_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1016452..1016628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft913_3a-0001EsuBft913_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1016452..1016628 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft913_3a-0001 ID=EsuBft913_3a-0001|Name=EsuBft913_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=412bp|location=Sequence derived from alignment at Scaffold_499:1016217..1016628- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGGTGCGGAAGAGCCCCTCTATGAAAACCGAAGGAAGGGGGTTTC
GGGTACAACGGTATCTCAATTACAGCGCGTCCAAGTCTTCACCACAACCA
ACGACGGATTCTTGCCCTCAAGAACGCAATGGACATGCCACAGCAGCAGC
ACTTCGACCGAAAACACGGAAGCTTAAGAAATCAACGACTAGACACCGCA
AACACGCACGGCAACGGCTCCTCCGGGGCAGTGAAGCGCTCCCGTATCTC
TCGCATGCCGCGGTTTCGTTCGTTTTCACTCGATATTCATCTCGCAAGGA
GTTCCTCCGCACGAGCGTGGTATCGTAGGTACTGAGGATGATGGCGGGCT
AGTCTACGGCAGNCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTC
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protein sequence of EsuBft913_3a-0001

>EsuBft913_3 ID=EsuBft913_3|Name=EsuBft913_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MSGAEEPLYENRRKGVSGTTVSQLQRVQVFTTTNDGFLPSRTQWTCHSSS
TSTENTEA
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mRNA from alignment at Scaffold_499:1016217..1016628-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft913_3a-0001 ID=EsuBft913_3a-0001|Name=EsuBft913_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=412bp|location=Sequence derived from alignment at Scaffold_499:1016217..1016628- (Ectocarpus subulatus male Bft15b)
ATGAGTGGTGCGGAAGAGCCCCTCTATGAAAACCGAAGGAAGGGGGTTTC
GGGTACAACGGTATCTCAATTACAGCGCGTCCAAGTCTTCACCACAACCA
ACGACGGATTCTTGCCCTCAAGAACGCAATGGACATGCCACAGCAGCAGC
ACTTCGACCGAAAACACGGAAGCTTAAGAAATCAACGACTAGACACCGCA
AACACGCACGGCAACGGCTCCTCCGGGGCAGTGAAGCGCTCCCGTATCTC
TCGCATGCCGCGGTTTCGTTCGTTTTCACTCGATATTCATCTCGCAAGGA
GTTCCTCCGCACGAGCGTGGTATCGTAGGTACTGAGGATGATGGCGGGCT
AGTCTACGGCAGNCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTC
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Coding sequence (CDS) from alignment at Scaffold_499:1016217..1016628-

>EsuBft913_3a-0001 ID=EsuBft913_3a-0001|Name=EsuBft913_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_499:1016217..1016628- (Ectocarpus subulatus male Bft15b)
ATGAGTGGTGCGGAAGAGCCCCTCTATGAAAACCGAAGGAAGGGGGTTTC
GGGTACAACGGTATCTCAATTACAGCGCGTCCAAGTCTTCACCACAACCA
ACGACGGATTCTTGCCCTCAAGAACGCAATGGACATGCCACAGCAGCAGC
ACTTCGACCGAAAACACGGAAGCTTAA
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