EsuBft911_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft911_3a-0001
Unique NameEsuBft911_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_257contigScaffold_257:243715..245790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004988914.1
ProteomeIdEsuBft911_3
Protein domainsSSF56672
Protein domainsPTHR10178
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon3
Max annot lvl33154|Opisthokonta
Length1485
Hectar predicted targeting categoryother localisation
Evalue1.74e-83
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta
Date last modified2016-06-13
Date creation2016-06-13
Descriptionretrotransposable element Tf2 155 kDa protein type 1-like
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft911_3aEsuBft911_3aEctocarpus subulatus male Bft15bgeneScaffold_257 243715..245790 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_3a-0001-exonagat-exon-39351Ectocarpus subulatus male Bft15bexonScaffold_257 243715..243825 +
EsuBft911_3a-0001-exonagat-exon-39352Ectocarpus subulatus male Bft15bexonScaffold_257 244352..244815 +
EsuBft911_3a-0001-exonEsuBft911_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_257 244881..245790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_3a-0001-cdsEsuBft911_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_257 243715..243825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_3a-0001EsuBft911_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_257 243715..245790 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft911_3a-0001 ID=EsuBft911_3a-0001|Name=EsuBft911_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1485bp|location=Sequence derived from alignment at Scaffold_257:243715..245790+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTTACCAACTTCGCCATGCAGGCAAACATTCCGTTCGACTTCAC
CCAGAGCATGGCCTCATTCAGGTCAACTTGGTACGCAATGATGGCTCGCC
TGCCCTTGTGGCTTGGTAACGTTTTGTGCGAATACCATGATGTGTTTTCG
AGTTCTCCGACCGACTTTGGATGTTGTTCGCTTTTTCCTTTTAAGCTTAC
AGTTCCTCCTGGCAGCGCACCCGTCACGTCTCGCCCCTACCGCGTTAATC
CCCCGGTGGCGAAACAAGTTGACGCGATTCTTGACCAATATCTTGCGGCA
GGTTTGATCCAACATTCGACCTCGCCTTACTCGAGCCCTTTGGTAGTCAT
ACCGAAGAAATCTGGTAGTGTTCGCATCACCGTCAATTATCGCAAGCTCA
ACAAGCTTTTTGCTTTTAGTCAGCCTCCGATTCCTCGAGTCGATGATACT
TTGGACAATTTGTTGAAAGGGCGAATTTATTCCCTTTTCGACATGAAATC
TTCGTTCCACCAAATCACGGTGCACCGCGATACAATCCCTTTGACGGCAT
TCGTGACGTGTTCCGGGCTTTTCGATCATCAACTCCGCGGTGTTGCATCG
TACTTGGATGATTTGATCGTCTTTGATGACACCCCTACTACTCATGTTGG
TACCATGCGCGCACTCTTTGATTGCTTGCGTACGCACAACTTGAAATTCA
CGCCTCCGAAAGCTACTATTGGCGCTACTGAAGAAGACTTCCTCGGACAC
ACCATCTCCCCTGACGGCGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCT
CACCAAAATGCCTATGCCCAGGGATGTCAAGCAACTACGTTCCCTTCTCG
GTGGTCTCAACTACTACCCTAAGTTCCTCCCCAACATGGCTAAACACATT
CGACCTCTGACTACTCTACTCAAGAAGCAGGAGAAGTTTATCTTCACCCC
TTCCATGGAGCAAGCCGTTTGCGTTTTATTAGCTGAGTTGGCCAATCCCC
CTGTTTTGGTTTATCCAGATTGGGATGCTGTTTCAGACGGCTCGCGACCT
TTTCACCTTCACTGTGATGCTAGTCGCGATGGGTTTGGTGGGACACTCGA
ACAAGAACAGCCAGATGGTTCCCTTCGCCCAATTGTCTTCATCAGTCGGG
CTACTTTGGACTCAGAACGCCACTGGACTCCCCTCGATCTCGAGGCGGGT
AGCATCGTGTGGTGTATCAAGCGCCTTCGCGGCTACTTGTGGGGTACAAA
GTTTCGCATTTTTACCGACCACAAATCTCTCGAGCATTTTGCTAAGGTGG
GGGAGAACAATGCCCGCGTTCAGCGCTGGCTGGAATTTCTTACCGCCGAC
AACTACACTCTCGAGTATCGCAAGGGTTCCGCAAATGGCAACGCTGATTT
CCTCTCACGCCTCCCAGTCGCTGCGGCTGAATGCGACTGTTNTCACTTTC
GAGTATCGCAAGGGTTCCGCAAATGGCAACACTGA
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protein sequence of EsuBft911_3a-0001

>EsuBft911_3 ID=EsuBft911_3|Name=EsuBft911_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=494bp
MEVTNFAMQANIPFDFTQSMASFRSTWYAMMARLPLWLGNVLCEYHDVFS
SSPTDFGCCSLFPFKLTVPPGSAPVTSRPYRVNPPVAKQVDAILDQYLAA
GLIQHSTSPYSSPLVVIPKKSGSVRITVNYRKLNKLFAFSQPPIPRVDDT
LDNLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTCSGLFDHQLRGVAS
YLDDLIVFDDTPTTHVGTMRALFDCLRTHNLKFTPPKATIGATEEDFLGH
TISPDGVRPNGAKVSALTKMPMPRDVKQLRSLLGGLNYYPKFLPNMAKHI
RPLTTLLKKQEKFIFTPSMEQAVCVLLAELANPPVLVYPDWDAVSDGSRP
FHLHCDASRDGFGGTLEQEQPDGSLRPIVFISRATLDSERHWTPLDLEAG
SIVWCIKRLRGYLWGTKFRIFTDHKSLEHFAKVGENNARVQRWLEFLTAD
NYTLEYRKGSANGNADFLSRLPVAAAECDCXHFRVSQGFRKWQH
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mRNA from alignment at Scaffold_257:243715..245790+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft911_3a-0001 ID=EsuBft911_3a-0001|Name=EsuBft911_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2076bp|location=Sequence derived from alignment at Scaffold_257:243715..245790+ (Ectocarpus subulatus male Bft15b)
ATGGAAGTTACCAACTTCGCCATGCAGGCAAACATTCCGTTCGACTTCAC
CCAGAGCATGGCCTCATTCAGGTCAACTTGGTACGCAATGATGGCTCGCC
TGCCCTTGTGGGTAACTATTTGGTGGATATGCTTCCCCAATGTGCTATGT
TTTCTTCCGAGGAACATTTTGTGCAAAATGGCTGCCAACGCATCCCTCTT
GCGGGCATTTCGTCTCTCGAACCCGGCGACGTCCTGGGTACAGCTTCGGC
TCCCCTTCTTCGCGTGCCTCTTATTGCTGTTTCTCGCCACAGTTTGAGCG
ATGGTCTTGAAACTGCGGCTTCAGAATCCACCGCTGCTTCAGACAGCTGG
CTCCCCGGTCCTGTTTCTGCGGGTGGCATTGATTCATCTGCCACGCACTC
CGTCTCTGACCCTTCGGTGTATAATTTACAGAGAGACCCATCCCGTCGGC
AAGCGACCGAGGGGACTTTGATTCCGCCAGTTCTTCCTCTTCGTCGCCTT
CGCCTGCTCTTCTCGAGCGGTTGACGCTAGAACAGCGTCAAACTTTCTCC
CAAGCCTGGGATAAGCTCCCCTGCCATCTCCGTGAGAATACTTTTGATCT
CCATGGCCCGGGTTGGACTCCCGATGCCATTACTCAGCTTGGTAACGTTT
TGTGCGAATACCATGATGTGTTTTCGAGTTCTCCGACCGACTTTGGATGT
TGTTCGCTTTTTCCTTTTAAGCTTACAGTTCCTCCTGGCAGCGCACCCGT
CACGTCTCGCCCCTACCGCGTTAATCCCCCGGTGGCGAAACAAGTTGACG
CGATTCTTGACCAATATCTTGCGGCAGGTTTGATCCAACATTCGACCTCG
CCTTACTCGAGCCCTTTGGTAGTCATACCGAAGAAATCTGGTAGTGTTCG
CATCACCGTCAATTATCGCAAGCTCAACAAGCTTTTTGCTTTTAGTCAGC
CTCCGATTCCTCGAGTCGATGATACTTTGGACAATTTGTTGAAAGGGCGA
ATTTATTCCCTTTTCGACATGAAATCTTCGTTCCACCAAATCACGGTGCA
CCGCGATACAATCCCTTTGACGGCATTCGTGACGTGTTCCGGGCTTTTCG
AGTGATTGAAGATGCCTCAAGGCAGTTCGGCTGCCCCTGGGTGGTTTTGC
AAAGTTGTCAACGAAGTCATCAACTCCGCGGTGTTGCATCGTACTTGGAT
GATTTGATCGTCTTTGATGACACCCCTACTACTCATGTTGGTACCATGCG
CGCACTCTTTGATTGCTTGCGTACGCACAACTTGAAATTCACGCCTCCGA
AAGCTACTATTGGCGCTACTGAAGAAGACTTCCTCGGACACACCATCTCC
CCTGACGGCGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCTCACCAAAAT
GCCTATGCCCAGGGATGTCAAGCAACTACGTTCCCTTCTCGGTGGTCTCA
ACTACTACCCTAAGTTCCTCCCCAACATGGCTAAACACATTCGACCTCTG
ACTACTCTACTCAAGAAGCAGGAGAAGTTTATCTTCACCCCTTCCATGGA
GCAAGCCGTTTGCGTTTTATTAGCTGAGTTGGCCAATCCCCCTGTTTTGG
TTTATCCAGATTGGGATGCTGTTTCAGACGGCTCGCGACCTTTTCACCTT
CACTGTGATGCTAGTCGCGATGGGTTTGGTGGGACACTCGAACAAGAACA
GCCAGATGGTTCCCTTCGCCCAATTGTCTTCATCAGTCGGGCTACTTTGG
ACTCAGAACGCCACTGGACTCCCCTCGATCTCGAGGCGGGTAGCATCGTG
TGGTGTATCAAGCGCCTTCGCGGCTACTTGTGGGGTACAAAGTTTCGCAT
TTTTACCGACCACAAATCTCTCGAGCATTTTGCTAAGGTGGGGGAGAACA
ATGCCCGCGTTCAGCGCTGGCTGGAATTTCTTACCGCCGACAACTACACT
CTCGAGTATCGCAAGGGTTCCGCAAATGGCAACGCTGATTTCCTCTCACG
CCTCCCAGTCGCTGCGGCTGAATGCGACTGTTNTCACTTTCGAGTATCGC
AAGGGTTCCGCAAATGGCAACACTGA
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Coding sequence (CDS) from alignment at Scaffold_257:243715..245790+

>EsuBft911_3a-0001 ID=EsuBft911_3a-0001|Name=EsuBft911_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1485bp|location=Sequence derived from alignment at Scaffold_257:243715..245790+ (Ectocarpus subulatus male Bft15b)
ATGGAAGTTACCAACTTCGCCATGCAGGCAAACATTCCGTTCGACTTCAC
CCAGAGCATGGCCTCATTCAGGTCAACTTGGTACGCAATGATGGCTCGCC
TGCCCTTGTGGCTTGGTAACGTTTTGTGCGAATACCATGATGTGTTTTCG
AGTTCTCCGACCGACTTTGGATGTTGTTCGCTTTTTCCTTTTAAGCTTAC
AGTTCCTCCTGGCAGCGCACCCGTCACGTCTCGCCCCTACCGCGTTAATC
CCCCGGTGGCGAAACAAGTTGACGCGATTCTTGACCAATATCTTGCGGCA
GGTTTGATCCAACATTCGACCTCGCCTTACTCGAGCCCTTTGGTAGTCAT
ACCGAAGAAATCTGGTAGTGTTCGCATCACCGTCAATTATCGCAAGCTCA
ACAAGCTTTTTGCTTTTAGTCAGCCTCCGATTCCTCGAGTCGATGATACT
TTGGACAATTTGTTGAAAGGGCGAATTTATTCCCTTTTCGACATGAAATC
TTCGTTCCACCAAATCACGGTGCACCGCGATACAATCCCTTTGACGGCAT
TCGTGACGTGTTCCGGGCTTTTCGATCATCAACTCCGCGGTGTTGCATCG
TACTTGGATGATTTGATCGTCTTTGATGACACCCCTACTACTCATGTTGG
TACCATGCGCGCACTCTTTGATTGCTTGCGTACGCACAACTTGAAATTCA
CGCCTCCGAAAGCTACTATTGGCGCTACTGAAGAAGACTTCCTCGGACAC
ACCATCTCCCCTGACGGCGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCT
CACCAAAATGCCTATGCCCAGGGATGTCAAGCAACTACGTTCCCTTCTCG
GTGGTCTCAACTACTACCCTAAGTTCCTCCCCAACATGGCTAAACACATT
CGACCTCTGACTACTCTACTCAAGAAGCAGGAGAAGTTTATCTTCACCCC
TTCCATGGAGCAAGCCGTTTGCGTTTTATTAGCTGAGTTGGCCAATCCCC
CTGTTTTGGTTTATCCAGATTGGGATGCTGTTTCAGACGGCTCGCGACCT
TTTCACCTTCACTGTGATGCTAGTCGCGATGGGTTTGGTGGGACACTCGA
ACAAGAACAGCCAGATGGTTCCCTTCGCCCAATTGTCTTCATCAGTCGGG
CTACTTTGGACTCAGAACGCCACTGGACTCCCCTCGATCTCGAGGCGGGT
AGCATCGTGTGGTGTATCAAGCGCCTTCGCGGCTACTTGTGGGGTACAAA
GTTTCGCATTTTTACCGACCACAAATCTCTCGAGCATTTTGCTAAGGTGG
GGGAGAACAATGCCCGCGTTCAGCGCTGGCTGGAATTTCTTACCGCCGAC
AACTACACTCTCGAGTATCGCAAGGGTTCCGCAAATGGCAACGCTGATTT
CCTCTCACGCCTCCCAGTCGCTGCGGCTGAATGCGACTGTTNTCACTTTC
GAGTATCGCAAGGGTTCCGCAAATGGCAACACTGA
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