EsuBft911_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft911_2a-0001
Unique NameEsuBft911_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_257contigScaffold_257:236439..240143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft911_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length101
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft911_2aEsuBft911_2aEctocarpus subulatus male Bft15bgeneScaffold_257 236439..240143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_2a-0001EsuBft911_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_257 236551..238785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_2a-0001-exonagat-exon-39350Ectocarpus subulatus male Bft15bexonScaffold_257 236439..236682 +
EsuBft911_2a-0001-exonagat-exon-39349Ectocarpus subulatus male Bft15bexonScaffold_257 238480..238896 +
EsuBft911_2a-0001-exonEsuBft911_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_257 239791..240143 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_2a-0001-exonagat-five_prime_utr-14934Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_257 236439..236550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_2a-0001-cdsEsuBft911_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_257 236551..236682 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft911_2a-0001-exonagat-three_prime_utr-22993Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_257 238786..238896 +
EsuBft911_2a-0001-exonagat-three_prime_utr-22994Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_257 239791..240143 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft911_2a-0001 ID=EsuBft911_2a-0001|Name=EsuBft911_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1014bp|location=Sequence derived from alignment at Scaffold_257:236439..240143+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCATTCCGCACGTTTGCACCTGCGTCGTGAAGTCGTTCTTGAACA
TTAGCCAGTTCTTTTCTTGGCCATCGAAGTTTAGCTGCTTGAGGCGCGGG
ATCCGGGCATTCATGAGTGGGTCGTACCGTGCCAGCGGATCACTGGTTGA
GCTATCGTGCGAGAAGTCCCCCACAGACGGCAGCGTGGGTCCTTGCGGGG
CTGTGTCCGGCAGTCCTCGTGCTCCCTCGAGCCCCTGTCCGGTGGACGCC
GCTGATGCGGCCAACGGGTCTCGGCCCGACCTCCACGATATGGTGAGCTG
CCTCCTCGTGGCGATGCGGGCGGCCACCATGAACGCAACGTCTCCGGTTG
TGTGGCCCGGCTGCGCCGTGGCGACTCCGGCATCTCCGGCGTTCCAGCGG
CCCAAGGCCGGCCGCGTCAAGGCCAAGCCGGTCCAGCCCATCGTGCGAGA
GCGTAGCTCGGGCGAGGACTCGGGCTGGAGTTGCGCGGGAGCCTCTCCCC
CCCCCCCGGAGCCATCTTCATTGGCGGGCAATGGCCGGGCACGACAGTAG
GCCAAGCGCCACACGAGCGGGACTCTTGGCAAGGGAGGCGGATCGGGCTC
TGGTTCAGACCGGAGTCTCACCCGGAAGCACGGCGCTCGGAAGGGTCCTT
CTTCCAGGCAACAAGTGAAACGGATCTTGGATGGAGGAGCCCCTGGACCA
GACGCTTTCCAGCTATTGATGCGTCACCTGGCGGAGCAATTTGACGTCGG
AGACCGCCAAGAGTCGTTTTTGCGGCTGCAACAATTTGGCGTAGCAGATG
GTACTCCTTTCGCGGATTATCTTCGGGCTTTCCGTTTGTTAGTTTCATCT
GTGACTGGCTCTGAGCGTACTTTGGCCCCTAGTGTATCCATGGTTCTCAA
AATTGTGCGAAACTCGGTCGACAAGCAATTTTCGAGTCTGTCTCCGCTTT
TGTAGCCGGGTGTTTTGGCCACTGCGGTCACTCCCTTTGAGTCGATTGCG
GTTGTGTGGGAGGC
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protein sequence of EsuBft911_2a-0001

>EsuBft911_2 ID=EsuBft911_2|Name=EsuBft911_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=145bp
MSGSYRASGSLVELSCEKSPTDGSVGPCGAVSGSPRAPSSPCPVDAADAA
NGSRPDLHDMVSCLLVAMRAATMNATSPVVWPGCAVATPASPAFQRPKAG
RVKAKPVQPIVRERSSGEDSGWSCAGASPPPPEPSSLAGNGRARQ
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mRNA from alignment at Scaffold_257:236439..240143+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft911_2a-0001 ID=EsuBft911_2a-0001|Name=EsuBft911_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3705bp|location=Sequence derived from alignment at Scaffold_257:236439..240143+ (Ectocarpus subulatus male Bft15b)
ATGCATCATTCCGCACGTTTGCACCTGCGTCGTGAAGTCGTTCTTGAACA
TTAGCCAGTTCTTTTCTTGGCCATCGAAGTTTAGCTGCTTGAGGCGCGGG
ATCCGGGCATTCATGAGTGGGTCGTACCGTGCCAGCGGATCACTGGTTGA
GCTATCGTGCGAGAAGTCCCCCACAGACGGCAGCGTGGGTCCTTGCGGGG
CTGTGTCCGGCAGTCCTCGTGCTCCCTCGAGCCCCTGTCCGGTGGTTGGC
GCTTGATCCACACGACCAGCGCCGGGAGGGGCGTGCCTTTCCCCCCGTGA
CTCTCCCCCGCCGNCGTGAAGTCGTTCTTGAACATTAGCCAGTTCTTTTC
TTGGCCATCGAAGCTTAGCTGCTTGAGGCGCGGGATCCGGGCATCCATGA
TTGGGTCGTACCGTGCCAGCGGGTNCCGCCCGCTCCGGTCGTACTTCCGG
CGGGCGGTGTCTCGGGCACTAACCCAGCCAGGGCTTCCATGACGGTCCCT
AACTTCTCGGTCATGATACTCTCCATTCTGGCGGTGGCCTCGTCGACGGC
AGTCCTGAGCTCCTCGTGAGTCGGGGCTGCCTTGCCCTTGCCAGCATCTC
CAGATCCAGCCGACATGTGTCCGGTTCACCAGGGGGATATGGGGTTAACC
TTCACTCTAGAGTGTTGATTGGTTCCAAGCCTAGTGCTGCTGGATAAGCA
CGGCTGACCAGGTTGACAGGGATGAAGAGATGGTAAAGTCGTTTATTAGG
TTGCCCTCGTAGACAAGCAACAGGAGAGAGTGGGCGCCGCGTGCGCCGCA
AAGCATCAAGCAACAGCCGCAAGAAATTCACCGACGAAAAGACGCGCAGA
CTTTCTGCAACACGGAACAATTCCAACTACCAAAGACATGTCGGGAGATA
CCCCGAAGATCCACGCCCGTGGAACGGTCACCGCTCGATTCTACCTTTGC
ACACATACATCTGTCTCGTTAGGGAACTTCGGTTCCAGACACACCAACAG
TTGTGGAGCCCCGGCTCTCCGCTGTAGCCGTCGTTTGAGCTTCGGCTCGT
TTTCTACAGCAGTAGCTTGGCTGTTGAGCTTCGGCTCTTTTGCCATGTTC
GGTTTGTTTGACAGCTTCGACTGTTGAGCTTGGCTCTCTCCTCAGCTTCG
GCTGTTTTTTTTTCTCGCCTTCGTGGCGTTTGATGCTTGTATTATTTGTA
GAATTTTATCTCCTTGCAGCGTTGTCTTTTTCCCCCGCGTTTGTTGGGCG
AAACTTGACGTTGACGCTCCGTCGATCATGCAAGTAGCAGTATCTCTTGT
CGCCGCACTCACCTTCCGAGGTGAGCACTGTACAGCTCTGTTGCTGGCTG
TGTGGGTATTCGTTCTCTTTCCTTCCCCAACAAATTCCGTTTTAGGACCA
AATTGTTGAGTGGGTGGTGTATCCCGTGGTATTTCATTTAGACTACATTT
CTCGTAAGTATGTAACCACATTATATGCATATAATCATCAAGAGTAGGCG
AAACTAACCGGTTGATTATGACTTCGATCACCCAACCCGGACACGTGATG
TAGCTTCGGCTCACACCGTCTGTGTCTGCAGTTTCGACTGCTCGCAAACG
GCACTAACCGGCTGTGTATGGCTTAGCTATTATACGACTTCGGTCACCCA
ACCCGGACACGTGATGTAGCTCCGGCTCACACCGCCTGTCTCTGCAGTTT
CGACTGCTCGCAAACGGCACTAACCGGCTGTGTATGGCTTAGCTATTGTA
CAACTTCGGTCACCCAACCCGGACACGTGCTGTAGCTTCGGCTCACGCCT
GCGACAGCAGTTGCGACTGCTCGCCGTGCTCACACCGCGGTTTTTCATGC
CACTAGTTCAGACTATGCCGGCAGTTTCGACTGCCCGCCGTGCTCGCACC
GCGGTTTCCTTACCTGTCGTTTCGACAACCAACCCCAATGCTAGTTGCTG
CTTCGGCGTTTCTAGCTGTAACCTCGGTTACTGCTGCAGTCTCGACTGTA
ACCTGCTATTTCGCTACCTGCCGTCGGCTGCCTCAATACAGGACGCCGCT
GATGCGGCCAACGGGTCTCGGCCCGACCTCCACGATATGGTGAGCTGCCT
CCTCGTGGCGATGCGGGCGGCCACCATGAACGCAACGTCTCCGGTTGTGT
GGCCCGGCTGCGCCGTGGCGACTCCGGCATCTCCGGCGTTCCAGCGGCCC
AAGGCCGGCCGCGTCAAGGCCAAGCCGGTCCAGCCCATCGTGCGAGAGCG
TAGCTCGGGCGAGGACTCGGGCTGGAGTTGCGCGGGAGCCTCTCCCCCCC
CCCCGGAGCCATCTTCATTGGCGGGCAATGGCCGGGCACGACAGTAGGCC
AAGCGCCACACGAGCGGGACTCTTGGCAAGGGAGGCGGATCGGGCTCTGG
TTCAGACCGGAGTCTCACCCGGAAGCACGGCGCTCGGAAGGGTCCTTCTT
CCAGGCAAGTAGTCCCGTCCCTTATGGATGCGACTTTGAGTGATCGTTTT
CTGTTACATGATGATGTCTTTTCACAGGCTTCGGCCCCCCACTCGACTTC
GGTTGTTGGTACGGTTTCGGCCCCCCCTTCTTTCCTCGGACTCAGGGCGT
TTGCGTCTTGTTGCGTTTTCGGACCTTCACCTGCCTTTAGGTTCCCCTGT
TTCTTCGGAGCCCGTTGCACCTTCTGTCCGTTCTGCCGCATTTCAATGCT
GTAGACCCCGGACATGTACGTAGCGTTGAGTTTTCGAATTCACCCCCGGT
TTCGACCACCCCTGTTTCTTTGGAAACCTCTGCACCCCGTAGCCTTTCTA
CCGCTCGCCATGCTGTAGATCCACGAATGATGCAGAACCCTAGGTTTTCG
AACCTCAACCCCCCGTCGGCGTTGATCCACCAGTGCCGGGTGTTTTGAAT
AGCATGTTGTCTTCAGACCATGCCCCCACAGCTGCTTCTGTAGCCGCCGC
ACCCCCCGCTGCTCCGATGATCGTGCTTTGCCACTTCCTTCTAACACAGC
ATACACTCGTCAAGCATTGATCGATGCGACTGATGCAGCTGCTCATAATG
CTCATGTAGCTACCGTACAACGAGCGTACATCACCCTCAACTTGAAAAAA
GTTTAGAATGTCGCTACCATGCCCGTCCCCGCTACTCTGTTGCCGGGAGA
CGGTTATCAGCAGCTTATTCGCACAACGAGAACGGCTTTGTCCGATATTA
TGCTGTTGTGTGATGAGCAGAGTGAAGGTTTGACAGGCGCCGATTTTGTG
CGTGGATAGGAACGTCTTCTCGAAAAAAAACTTTTGAGTGCGATCACCCC
CGACAAGCCCTCTACCGCCGATCTCGTCCTTGCCGTTACTGATTTCTTTC
AGCAAGTGAAACGGATCTTGGATGGAGGAGCCCCTGGACCAGACGCTTTC
CAGCTATTGATGCGTCACCTGGCGGAGCAATTTGACGTCGGAGACCGCCA
AGAGTCGTTTTTGCGGCTGCAACAATTTGGCGTAGCAGATGGTACTCCTT
TCGCGGATTATCTTCGGGCTTTCCGTTTGTTAGTTTCATCTGTGACTGGC
TCTGAGCGTACTTTGGCCCCTAGTGTATCCATGGTTCTCAAAATTGTGCG
AAACTCGGTCGACAAGCAATTTTCGAGTCTGTCTCCGCTTTTGTAGCCGG
GTGTTTTGGCCACTGCGGTCACTCCCTTTGAGTCGATTGCGGTTGTGTGG
GAGGC
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Coding sequence (CDS) from alignment at Scaffold_257:236439..240143+

>EsuBft911_2a-0001 ID=EsuBft911_2a-0001|Name=EsuBft911_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=438bp|location=Sequence derived from alignment at Scaffold_257:236439..240143+ (Ectocarpus subulatus male Bft15b)
ATGAGTGGGTCGTACCGTGCCAGCGGATCACTGGTTGAGCTATCGTGCGA
GAAGTCCCCCACAGACGGCAGCGTGGGTCCTTGCGGGGCTGTGTCCGGCA
GTCCTCGTGCTCCCTCGAGCCCCTGTCCGGTGGACGCCGCTGATGCGGCC
AACGGGTCTCGGCCCGACCTCCACGATATGGTGAGCTGCCTCCTCGTGGC
GATGCGGGCGGCCACCATGAACGCAACGTCTCCGGTTGTGTGGCCCGGCT
GCGCCGTGGCGACTCCGGCATCTCCGGCGTTCCAGCGGCCCAAGGCCGGC
CGCGTCAAGGCCAAGCCGGTCCAGCCCATCGTGCGAGAGCGTAGCTCGGG
CGAGGACTCGGGCTGGAGTTGCGCGGGAGCCTCTCCCCCCCCCCCGGAGC
CATCTTCATTGGCGGGCAATGGCCGGGCACGACAGTAG
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